Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 7.2e-153 543.9 276 100.0
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 3.4e-118 428.7 279 78.1
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 1.8e-116 422.9 279 75.6
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 9.5e-105 384.0 279 71.7
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 5.6e-97 358.2 231 77.1
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 2.8e-96 355.9 259 68.7
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 8.9e-95 350.9 303 63.0
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 1.2e-94 350.5 274 67.2
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 9.9e-94 347.4 272 68.8
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 3.7e-93 345.5 275 68.0
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 3.7e-93 345.5 303 62.4
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 9.2e-92 340.9 267 67.8
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.6e-91 340.1 295 61.7
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.3e-90 337.0 303 61.7
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 2.3e-90 336.3 232 75.0
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 6.6e-90 334.7 209 80.4
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.1e-89 334.0 302 60.9
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.5e-89 333.6 303 61.4
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.9e-89 333.2 295 60.3
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 3.3e-89 332.4 236 72.0
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.1e-84 317.4 303 56.8
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.4e-84 316.2 293 58.4
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 4.1e-84 315.5 305 58.4
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 5.4e-84 315.1 229 70.7
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.6e-83 313.5 252 62.7
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 4.6e-83 312.0 307 59.0
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 4.6e-83 312.0 304 57.2
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 7.8e-83 311.2 274 60.9
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 1.7e-82 310.1 205 74.1
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 3.0e-82 309.3 294 59.2
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 3.9e-82 308.9 272 61.8
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 5.1e-82 308.5 275 60.7
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 1.5e-81 307.0 280 59.6
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.9e-81 306.6 207 72.9
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 4.3e-81 305.4 188 79.8
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 4.3e-81 305.4 218 71.6
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 7.3e-81 304.7 195 75.9
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 9.6e-81 304.3 278 57.6
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.6e-80 303.5 258 62.0
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 2.8e-80 302.8 218 67.4
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 2.8e-80 302.8 214 69.6
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 4.7e-80 302.0 216 70.8
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 8.1e-80 301.2 277 57.8
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 1.1e-79 300.8 278 57.2
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 1.4e-79 300.4 279 57.3
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.8e-79 300.1 278 57.6
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.8e-79 300.1 199 73.9
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 3.1e-79 299.3 195 72.8
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 6.9e-79 298.1 186 78.5
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 9.0e-79 297.7 210 71.0
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 2.0e-78 296.6 210 71.0
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.4e-78 295.8 255 61.2
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.4e-78 295.8 278 57.2
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 7.6e-78 294.7 278 57.2
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 7.6e-78 294.7 253 59.7
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 9.9e-78 294.3 251 61.0
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 2.2e-77 293.1 195 73.3
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 6.4e-77 291.6 274 56.2
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 6.4e-77 291.6 187 74.3
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 6.4e-77 291.6 187 74.3
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 8.4e-77 291.2 274 55.8
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 8.4e-77 291.2 208 68.8
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 3.2e-76 289.3 268 56.0
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 4.2e-76 288.9 235 63.8
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 5.4e-76 288.5 186 73.1
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 5.4e-76 288.5 186 73.1
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 5.4e-76 288.5 287 55.7
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.6e-75 287.0 282 55.3
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.6e-75 287.0 225 65.3
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 2.7e-75 286.2 274 56.2
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 3.5e-75 285.8 221 62.9
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 3.5e-75 285.8 221 62.9
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 3.5e-75 285.8 187 71.1
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 3.5e-75 285.8 190 75.8
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 4.6e-75 285.4 225 65.3
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.3e-74 283.1 187 73.3
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 3.9e-74 282.3 197 70.1
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 3.9e-74 282.3 249 61.4
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 6.6e-74 281.6 250 56.8
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.1e-73 280.8 206 67.5
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 3.3e-73 279.3 191 69.6
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 9.6e-73 277.7 219 62.1
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.3e-72 277.3 167 76.6
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.3e-72 277.3 224 65.2
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 8.1e-72 274.6 192 73.4
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.4e-71 273.9 201 68.2
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.4e-71 273.9 189 70.4
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 1.8e-71 273.5 283 53.0
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 2.4e-71 273.1 243 62.1
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.1e-71 272.7 237 58.6
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 6.9e-71 271.6 188 69.1
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 6.9e-71 271.6 249 58.2
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 2.0e-70 270.0 194 68.6
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 3.4e-70 269.2 202 66.8
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 4.5e-70 268.9 227 60.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.5e-70 268.9 227 60.8
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 4.5e-70 268.9 211 64.0
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 5.8e-70 268.5 186 70.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.8e-70 268.5 227 60.8
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 7.6e-70 268.1 201 66.7
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 9.9e-70 267.7 188 67.6
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.3e-69 267.3 273 54.9
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 2.2e-69 266.5 169 75.1
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 2.9e-69 266.2 189 70.4
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 4.9e-69 265.4 199 66.3
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.1e-68 264.2 201 67.7
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 1.4e-68 263.8 185 72.4
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 4.2e-68 262.3 195 66.7
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 6.7e-66 255.0 251 55.0
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.8e-63 246.9 191 66.5
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 3.4e-62 242.7 160 72.5
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 9.9e-62 241.1 176 67.0
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 5.5e-60 235.3 186 66.1
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 2.7e-59 233.0 258 52.3
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 3.0e-58 229.6 134 81.3
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 6.2e-56 221.9 235 55.7
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 2.4e-55 219.9 148 75.0
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 6.9e-55 218.4 173 63.0
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 5.8e-54 215.3 156 69.9
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 2.2e-53 213.4 157 68.8
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 2.9e-53 213.0 157 70.7
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 1.9e-49 200.3 156 66.7
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 8.2e-48 194.9 118 81.4
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.0e-45 188.0 109 80.7
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 2.4e-39 166.8 93 83.9
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.6e-35 154.1 248 41.5
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.7e-32 142.9 218 45.4
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 6.3e-32 142.1 135 60.0
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.4e-31 140.2 112 66.1
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 4.1e-31 139.4 92 70.7
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 3.8e-29 132.9 137 48.9
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 5.0e-29 132.5 99 67.7
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 3.6e-27 126.3 133 45.9
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 3.9e-26 122.9 156 39.7
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 2.0e-25 120.6 102 57.8
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 2.4e-23 113.6 78 71.8
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 5.0e-21 105.9 92 57.6
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 1.8e-15 87.4 84 54.8
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.6e-14 84.3 165 39.4
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 1.5e-09 67.8 41 73.2
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 2.4e-07 60.5 37 73.0
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 5.4e-07 59.3 109 43.1
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 2.7e-06 57.0 58 53.4


User provided reference genes

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