Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.8e-80 300.8 152 100.0
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 6.1e-37 157.9 154 59.1
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 4.4e-35 151.8 157 56.7
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 8.2e-34 147.5 155 52.9
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 8.2e-34 147.5 155 54.8
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.4e-33 146.7 155 52.3
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 2.4e-33 146.0 154 53.9
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 5.3e-33 144.8 152 53.9
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.2e-32 143.7 155 52.9
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.2e-32 143.7 152 53.3
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.6e-32 143.3 155 52.9
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.0e-32 142.9 155 51.6
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 2.7e-32 142.5 155 50.3
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 5.9e-32 141.4 159 53.5
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 7.7e-32 141.0 155 49.7
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.3e-31 140.2 155 51.6
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.7e-31 139.8 155 50.3
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 2.9e-31 139.0 155 49.7
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 6.5e-31 137.9 151 51.0
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.1e-30 137.1 155 49.0
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.1e-30 137.1 157 50.3
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.1e-30 137.1 151 51.0
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.1e-30 137.1 160 48.1
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 1.5e-30 136.7 156 49.4
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.5e-30 136.7 155 49.0
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.2e-30 135.6 155 49.7
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 3.2e-30 135.6 154 49.4
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 4.2e-30 135.2 155 47.7
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 9.4e-30 134.0 157 49.0
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 9.4e-30 134.0 154 50.0
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 9.4e-30 134.0 144 50.7
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.2e-29 133.7 155 50.3
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.2e-29 133.7 155 51.6
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.6e-29 133.3 157 49.7
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 2.1e-29 132.9 150 50.0
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.1e-29 132.9 156 50.0
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 2.1e-29 132.9 155 49.0
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 6.1e-29 131.3 152 50.7
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 6.1e-29 131.3 155 45.8
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 8.0e-29 131.0 155 48.4
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.0e-28 130.6 155 45.8
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.4e-28 130.2 155 48.4
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.4e-28 130.2 154 48.7
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.8e-28 129.8 150 48.7
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.8e-28 129.8 159 47.2
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.8e-28 129.8 155 47.1
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.3e-28 129.4 155 50.3
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.0e-28 129.0 154 46.8
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.0e-28 129.0 155 47.7
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 4.0e-28 128.6 158 48.7
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 4.0e-28 128.6 154 47.4
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 6.8e-28 127.9 158 48.7
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 6.8e-28 127.9 152 48.7
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 6.8e-28 127.9 152 48.7
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 8.8e-28 127.5 158 48.7
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 8.8e-28 127.5 156 47.4
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.2e-27 127.1 151 49.0
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.2e-27 127.1 154 46.8
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.5e-27 126.7 158 48.1
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.5e-27 126.7 158 48.1
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.5e-27 126.7 152 49.3
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.5e-27 126.7 155 47.1
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 2.0e-27 126.3 158 48.1
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.0e-27 126.3 156 46.2
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 2.0e-27 126.3 155 47.7
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.6e-27 125.9 157 46.5
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 2.6e-27 125.9 158 48.1
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 2.6e-27 125.9 152 48.0
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.4e-27 125.6 156 48.1
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 3.4e-27 125.6 156 48.7
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 4.4e-27 125.2 155 45.8
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 4.4e-27 125.2 155 48.4
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 5.7e-27 124.8 156 44.9
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.7e-27 124.8 155 45.8
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 7.5e-27 124.4 158 47.5
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 9.8e-27 124.0 152 45.4
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 9.8e-27 124.0 155 48.4
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.3e-26 123.6 152 48.0
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.3e-26 123.6 155 46.5
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.2e-26 122.9 158 48.7
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.7e-26 122.1 156 49.4
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 3.7e-26 122.1 156 44.2
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 4.8e-26 121.7 150 49.3
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 4.8e-26 121.7 157 48.4
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 6.3e-26 121.3 155 46.5
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 6.3e-26 121.3 133 51.9
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 6.3e-26 121.3 155 45.2
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 8.3e-26 120.9 155 45.8
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.4e-25 119.4 156 45.5
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 2.4e-25 119.4 154 46.1
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 2.4e-25 119.4 112 54.5
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 3.1e-25 119.0 155 45.8
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 3.1e-25 119.0 123 52.8
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 3.1e-25 119.0 157 44.6
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 3.1e-25 119.0 160 46.9
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 4.1e-25 118.6 156 43.6
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 5.4e-25 118.2 152 48.7
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 5.4e-25 118.2 156 43.6
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 7.0e-25 117.9 154 44.8
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 7.0e-25 117.9 154 44.8
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.2e-24 117.1 157 47.8
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.2e-24 117.1 157 47.8
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 1.2e-24 117.1 160 45.0
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.2e-24 117.1 155 44.5
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 1.2e-24 117.1 154 44.8
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.6e-24 116.7 113 51.3
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 1.6e-24 116.7 149 45.6
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.6e-24 116.7 148 46.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.5e-24 115.5 149 45.0
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 4.5e-24 115.2 159 43.4
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 5.9e-24 114.8 158 47.5
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 5.9e-24 114.8 110 50.9
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 7.7e-24 114.4 145 46.9
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.0e-23 114.0 112 50.9
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.3e-23 113.6 123 51.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.7e-23 113.2 151 47.7
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 8.5e-23 110.9 150 41.3
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.5e-22 110.2 149 45.0
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 2.5e-22 109.4 148 43.9
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 7.2e-22 107.8 118 50.0
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.2e-21 107.1 112 52.7
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.4e-20 103.6 149 44.3
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 2.3e-20 102.8 128 45.3
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 4.0e-20 102.1 116 48.3
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 6.8e-20 101.3 126 43.7
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.0e-19 99.8 89 56.2
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 7.5e-19 97.8 103 50.5
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 3.7e-18 95.5 117 42.7
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.4e-17 93.6 119 42.0
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.4e-17 93.6 124 44.4
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 3.1e-17 92.4 164 42.7
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 7.0e-17 91.3 134 38.8
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.7e-15 86.7 144 34.7
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.3e-15 86.3 122 41.0
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 1.5e-14 83.6 69 58.0
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.4e-12 77.0 112 35.7
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 8.9e-12 74.3 155 34.8
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.2e-11 73.9 159 34.6
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 2.0e-11 73.2 82 45.1
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.7e-10 68.9 60 58.3
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 3.7e-10 68.9 74 44.6
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.4e-10 68.2 157 38.2
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.1e-09 67.4 157 38.2
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.1e-09 67.4 157 38.2
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 8.6e-07 57.8 90 43.3
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 8.6e-07 57.8 62 41.9


User provided reference genes

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