Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 3.2e-90 335.1 172 100.0
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 8.9e-77 290.4 172 86.0
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 2.4e-74 282.3 172 83.1
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 5.4e-74 281.2 168 85.7
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 4.0e-69 265.0 175 77.7
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 5.2e-69 264.6 173 76.9
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 8.9e-69 263.8 175 77.1
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 8.9e-69 263.8 175 77.1
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.5e-68 263.1 168 76.8
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 3.4e-68 261.9 173 75.7
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 4.4e-68 261.5 172 76.2
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 9.9e-68 260.4 173 75.7
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.3e-67 260.0 172 75.6
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.3e-67 260.0 172 75.6
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 2.9e-67 258.8 178 74.7
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 3.8e-67 258.5 172 73.3
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 3.8e-67 258.5 172 75.0
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 3.8e-67 258.5 172 75.6
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 6.4e-67 257.7 173 76.3
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 8.4e-67 257.3 172 76.7
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 8.4e-67 257.3 173 74.6
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 1.4e-66 256.5 172 76.7
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.4e-66 256.5 172 73.8
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 1.4e-66 256.5 170 75.9
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 1.4e-66 256.5 167 78.4
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.4e-66 256.5 173 75.7
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.4e-66 256.5 173 75.7
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.4e-66 256.5 173 75.7
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.9e-66 256.1 172 73.8
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 1.9e-66 256.1 171 75.4
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.9e-66 256.1 172 73.8
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.9e-66 256.1 172 76.7
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 2.4e-66 255.8 172 75.0
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 3.2e-66 255.4 173 75.1
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 3.2e-66 255.4 172 73.8
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 3.2e-66 255.4 173 75.7
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 4.1e-66 255.0 172 73.8
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 4.1e-66 255.0 172 74.4
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 5.4e-66 254.6 172 74.4
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 7.1e-66 254.2 181 72.9
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 9.2e-66 253.8 175 72.6
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.6e-65 253.1 172 73.3
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.6e-65 253.1 173 72.8
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 1.6e-65 253.1 176 74.4
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 2.1e-65 252.7 178 72.5
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 2.7e-65 252.3 172 72.7
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 72.3
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 3.5e-65 251.9 172 75.0
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 3.5e-65 251.9 170 75.3
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 4.6e-65 251.5 173 72.8
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 4.6e-65 251.5 159 78.6
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.0e-65 251.1 160 78.1
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 6.0e-65 251.1 172 72.1
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 7.8e-65 250.8 172 72.1
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 7.8e-65 250.8 172 72.1
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 7.8e-65 250.8 174 72.4
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 7.8e-65 250.8 226 60.6
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 1.0e-64 250.4 172 71.5
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.0e-64 250.4 160 77.5
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.3e-64 250.0 174 72.4
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 1.3e-64 250.0 175 73.1
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.3e-64 249.2 172 72.7
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 3.0e-64 248.8 160 76.9
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 3.9e-64 248.4 165 73.9
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 3.9e-64 248.4 165 73.9
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 3.9e-64 248.4 174 73.6
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 3.9e-64 248.4 173 71.7
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 5.1e-64 248.1 172 72.1
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 6.6e-64 247.7 173 74.0
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.6e-64 247.7 160 76.9
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 1.1e-63 246.9 173 72.3
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.1e-63 246.9 174 72.4
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 1.9e-63 246.1 170 75.3
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.9e-63 246.1 165 74.5
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 2.5e-63 245.7 165 73.3
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 2.5e-63 245.7 174 73.0
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 2.5e-63 245.7 174 73.0
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 3.3e-63 245.4 170 72.9
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 3.3e-63 245.4 174 69.5
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 4.3e-63 245.0 174 73.0
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 4.3e-63 245.0 171 72.5
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 7.3e-63 244.2 163 74.8
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 7.3e-63 244.2 174 72.4
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.2e-62 243.4 174 72.4
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.6e-62 243.0 201 65.2
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.6e-62 243.0 173 70.5
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 2.8e-62 242.3 160 73.8
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 2.8e-62 242.3 208 62.5
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 2.8e-62 242.3 165 76.4
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.7e-62 241.5 201 64.7
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.7e-62 241.5 201 64.7
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 8.1e-62 240.7 182 69.2
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 8.1e-62 240.7 169 72.8
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 1.1e-61 240.4 174 70.7
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.1e-61 240.4 181 69.6
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.8e-61 239.6 160 76.2
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 9.0e-61 237.3 173 67.1
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.5e-60 236.5 158 74.1
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 3.4e-60 235.3 174 70.1
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 4.4e-60 235.0 196 63.3
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 1.7e-59 233.0 173 65.9
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 2.2e-59 232.6 171 69.6
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.2e-58 228.8 219 58.4
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 3.2e-58 228.8 168 68.5
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 9.3e-58 227.3 169 68.6
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.3e-56 223.4 169 66.3
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.1e-55 220.3 176 64.8
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.9e-53 211.1 210 57.6
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 6.9e-53 211.1 189 61.9
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 9.0e-53 210.7 143 74.1
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.5e-52 209.9 139 74.8
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 2.6e-52 209.1 172 61.0
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 7.1e-50 201.1 263 46.8
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 2.7e-49 199.1 174 63.2
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 5.6e-47 191.4 190 59.5
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.8e-46 189.1 120 75.8
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 2.6e-44 182.6 113 77.0
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 5.5e-42 174.9 172 58.1
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.7e-41 172.6 169 55.0
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 4.8e-38 161.8 116 69.0
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 5.3e-37 158.3 108 75.0
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 7.6e-36 154.5 113 61.9
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 6.5e-35 151.4 142 48.6
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 1.1e-34 150.6 140 50.7
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 2.5e-34 149.4 95 80.0
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 9.3e-34 147.5 108 68.5
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 1.1e-31 140.6 109 65.1
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.1e-31 140.6 119 63.9
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 5.7e-31 138.3 117 64.1
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.2e-30 136.3 118 64.4
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 4.8e-30 135.2 100 70.0
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 8.5e-27 124.4 81 71.6
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 8.5e-27 124.4 81 71.6
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 2.3e-24 116.3 103 61.2
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 7.4e-23 111.3 129 41.9
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 3.1e-21 105.9 83 68.7
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 9.1e-21 104.4 63 81.0
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.0e-20 103.2 64 78.1
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 3.4e-20 102.4 65 73.8
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 5.9e-20 101.7 104 46.2
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.8e-19 99.0 100 56.0
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 5.0e-19 98.6 110 38.2
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.5e-18 96.3 61 73.8
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.6e-17 93.6 91 56.0
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 2.3e-16 89.7 60 68.3
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 6.7e-16 88.2 93 47.3
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 2.6e-15 86.3 106 39.6
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 8.2e-14 81.3 50 76.0
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 6.9e-13 78.2 151 33.8
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.4e-12 75.9 104 46.2
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.3e-06 57.4 32 87.5


User provided reference genes

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