Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 0.0e+00 1224.2 631 100.0
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 7.1e-289 996.9 665 74.4
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 7.1e-289 996.9 665 74.4
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.1e-262 909.8 666 68.6
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 8.2e-253 877.1 664 66.7
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 9.4e-241 837.0 560 72.0
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.3e-237 826.6 665 68.0
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 2.4e-236 822.4 665 64.1
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 3.8e-234 815.1 661 64.0
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 8.5e-234 813.9 564 68.8
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 3.2e-233 812.0 663 62.6
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 6.1e-232 807.7 662 62.2
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 6.7e-231 804.3 666 61.7
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.1e-230 803.5 661 61.9
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 2.0e-230 802.7 664 66.4
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.7e-229 799.7 673 62.0
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 1.7e-229 799.7 673 61.5
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 2.8e-229 798.9 549 69.4
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.7e-229 798.5 661 61.9
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 4.8e-229 798.1 667 61.6
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.1e-228 797.0 661 61.9
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.4e-228 796.6 549 71.6
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.4e-228 796.6 674 65.1
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 4.1e-228 795.0 663 61.1
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.1e-228 795.0 663 61.1
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 9.1e-228 793.9 663 60.9
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-227 793.5 663 60.9
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.2e-227 793.5 667 63.1
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 2.0e-227 792.7 667 63.1
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.6e-227 792.3 558 69.5
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 4.5e-227 791.6 671 63.6
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.0e-226 790.4 663 60.8
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.3e-226 790.0 549 71.0
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 6.5e-226 787.7 663 60.6
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 6.5e-226 787.7 553 68.0
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.1e-225 786.9 680 60.4
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-225 786.9 663 60.8
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.5e-225 786.6 563 67.5
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 2.5e-225 785.8 664 60.7
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 3.2e-225 785.4 671 61.7
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 4.2e-225 785.0 645 66.4
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 5.5e-225 784.6 667 60.4
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 5.5e-225 784.6 674 60.4
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 5.5e-225 784.6 658 61.1
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 7.2e-225 784.3 667 60.4
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 9.4e-225 783.9 572 66.8
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.2e-224 783.5 684 59.9
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 8.0e-224 780.8 668 62.3
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.4e-223 780.0 678 60.5
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.3e-223 779.2 667 60.0
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 8.8e-223 777.3 558 69.0
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 2.6e-222 775.8 562 68.5
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 5.7e-222 774.6 562 67.3
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 5.7e-222 774.6 657 61.5
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 7.5e-222 774.2 548 69.7
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.3e-221 773.5 663 62.0
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 1.7e-221 773.1 564 66.7
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 4.8e-221 771.5 546 70.0
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 1.1e-220 770.4 546 69.8
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.8e-220 769.6 559 68.5
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 3.1e-220 768.8 664 59.3
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 7.0e-220 767.7 558 66.8
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.2e-219 766.9 531 69.9
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.0e-219 766.1 665 59.4
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 2.7e-219 765.8 665 59.4
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.3e-218 763.5 564 67.2
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 1.5e-217 760.0 647 60.7
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.1e-216 756.1 665 59.7
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 4.7e-216 755.0 557 67.0
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 1.8e-215 753.1 607 65.4
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 8.8e-215 750.7 569 65.2
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 4.1e-212 741.9 540 66.9
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 2.7e-211 739.2 667 58.9
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 4.5e-211 738.4 556 67.4
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 4.5e-211 738.4 566 65.2
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.7e-210 736.5 560 64.8
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.7e-210 736.5 560 64.8
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 6.6e-210 734.6 566 65.0
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 4.2e-209 731.9 666 59.0
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 8.0e-208 727.6 600 61.8
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.0e-207 727.2 574 62.9
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.4e-207 726.9 558 64.3
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 1.8e-207 726.5 551 65.7
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 8.9e-207 724.2 672 58.2
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 1.3e-205 720.3 553 65.5
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.8e-204 716.5 660 57.0
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.1e-204 715.7 661 56.6
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 3.1e-204 715.7 579 63.2
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 1.2e-203 713.8 564 63.1
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.6e-203 713.4 683 56.5
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 2.0e-203 713.0 577 63.3
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.0e-202 710.7 554 63.4
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 2.3e-202 709.5 551 63.9
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 8.6e-202 707.6 668 57.5
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 8.0e-200 701.0 558 61.8
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 4.0e-199 698.7 671 57.2
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 2.6e-198 696.0 546 62.5
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 4.4e-198 695.3 680 56.6
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 4.4e-198 695.3 679 56.6
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 7.0e-196 688.0 686 55.8
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 7.0e-196 688.0 686 55.8
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 2.7e-195 686.0 686 55.7
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 3.5e-195 685.6 558 60.9
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 4.6e-195 685.3 566 59.0
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 6.0e-195 684.9 493 68.4
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 8.6e-194 681.0 557 61.2
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 8.6e-194 681.0 539 62.0
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 1.1e-193 680.6 540 66.1
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.5e-193 680.2 529 63.7
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.1e-191 674.1 422 76.8
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.4e-191 673.7 533 65.1
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 4.0e-191 672.2 656 58.5
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 5.4e-188 661.8 562 59.8
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 9.2e-188 661.0 669 55.8
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 3.5e-187 659.1 669 55.6
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 3.5e-187 659.1 669 55.6
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 5.8e-182 641.7 681 53.6
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.3e-178 630.6 558 57.9
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 5.6e-177 625.2 673 53.2
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 4.7e-176 622.1 423 73.0
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 9.9e-166 587.8 580 53.4
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.9e-164 583.6 551 56.1
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 5.4e-164 582.0 580 55.0
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.5e-153 547.4 416 66.3
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 2.1e-152 543.5 592 50.5
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 4.8e-152 542.3 450 62.7
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 4.2e-140 502.7 522 52.1
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 5.1e-130 469.2 567 45.7
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 3.6e-123 446.4 334 63.2
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 7.7e-118 428.7 391 54.5
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.3e-114 417.2 390 52.3
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 2.2e-112 410.6 602 42.5
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.3e-92 343.6 283 57.6
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 3.6e-83 313.5 320 53.8
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 4.3e-68 263.5 212 61.3
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 2.7e-62 244.2 391 40.4
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 2.3e-45 188.0 188 48.4
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 9.3e-39 166.0 158 53.8
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 3.0e-29 134.4 302 29.8
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 5.1e-29 133.7 163 46.0
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 6.3e-27 126.7 77 80.5
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 3.8e-24 117.5 101 60.4
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 4.8e-19 100.5 142 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 1.7e-16 92.0 166 33.7
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 1.2e-14 85.9 66 60.6
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 9.7e-12 76.3 108 43.5
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 1.5e-09 68.9 91 41.8
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 1.7e-08 65.5 57 61.4


User provided reference genes

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