Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 2206.4 1136 100.0
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1743.0 1163 77.6
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1723.4 1164 77.0
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1600.9 1221 69.6
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1591.2 1181 71.2
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1571.2 1155 69.9
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1551.6 1168 68.1
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1542.7 1158 68.9
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1542.7 1167 67.9
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1540.0 1220 66.1
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1532.7 1171 66.8
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1528.5 1145 67.9
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1527.3 1170 66.8
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1525.0 1167 66.9
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1524.6 1171 67.6
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1524.2 1161 67.6
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1523.8 1163 68.0
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1523.1 1169 67.1
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1520.8 1167 67.0
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1519.2 1161 67.5
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1517.7 1167 66.7
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1517.3 1167 66.8
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1512.3 1145 67.2
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1511.5 1167 67.1
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1511.1 1174 66.4
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1511.1 1174 66.2
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1508.8 1172 66.6
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1505.7 1162 66.9
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1504.2 1191 65.5
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1503.0 1165 67.2
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1502.6 1169 67.9
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1499.6 1216 64.5
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1496.5 1167 65.7
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1495.7 1165 66.0
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1495.7 1166 66.1
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1494.9 1167 66.2
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1494.6 1167 66.0
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1491.9 1168 65.7
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1490.7 1167 66.2
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1489.2 1146 66.8
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1488.4 1169 65.3
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1488.4 1161 66.5
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1487.2 1165 66.4
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1480.3 1172 64.8
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1478.8 1162 65.4
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1476.5 1175 64.4
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1475.7 1009 74.0
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1474.1 1177 64.8
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1471.8 1151 65.4
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1469.9 1175 64.2
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1469.1 1153 65.3
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1468.8 1174 64.4
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1467.6 1173 64.5
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1467.2 1173 64.8
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1466.8 1167 65.2
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1464.9 1167 64.9
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1461.4 1173 63.9
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1453.0 1172 63.8
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1451.4 1210 62.7
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1448.3 1174 65.1
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1447.2 1175 63.7
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1446.4 1167 63.5
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1442.6 1173 63.4
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1437.9 1167 63.6
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1432.9 1151 64.6
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1425.6 1153 64.4
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1424.8 1167 64.1
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1424.1 1244 60.5
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1419.8 1147 63.9
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1419.4 1150 63.9
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1417.1 1152 64.5
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1416.0 1178 63.9
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1412.9 1152 64.0
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1409.0 1183 63.0
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1403.7 1175 62.9
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1395.9 1127 64.2
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1394.0 1179 62.3
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1394.0 1146 62.9
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1393.6 1229 59.9
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1391.7 1152 62.8
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1387.9 1026 68.8
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1382.9 1142 62.8
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1381.7 1142 62.6
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1378.2 1170 62.8
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1365.5 1155 61.6
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1365.5 1142 62.3
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1365.1 1142 62.3
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1357.4 1148 63.0
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1340.9 1165 60.7
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1340.1 1157 60.9
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1328.9 1142 61.4
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1326.6 1144 61.2
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1323.9 1019 67.6
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1256.5 1166 56.5
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1251.9 1147 57.8
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1229.2 887 69.8
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1201.0 1185 54.7
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1137.1 964 61.1
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 2.5e-308 1062.4 888 62.7
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 5.7e-305 1051.2 795 66.9
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 4.2e-300 1035.0 1169 49.1
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 6.7e-298 1027.7 1149 49.4
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 1.8e-295 1019.6 815 65.4
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 1.2e-294 1016.9 1145 51.0
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 9.2e-271 937.6 1200 45.2
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 2.5e-252 876.3 795 58.6
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 1.1e-234 817.8 1116 44.0
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 1.3e-232 810.8 570 72.8
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 2.5e-204 716.8 1210 37.8
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 3.2e-183 646.7 608 55.4
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 5.5e-183 646.0 598 56.5
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 4.7e-166 589.7 649 52.1
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.2e-164 585.1 1291 33.4
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 4.4e-164 583.2 1119 34.8
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 6.6e-160 569.3 448 67.0
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 7.3e-135 486.1 381 66.4
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 3.2e-130 470.7 381 65.1
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 2.3e-128 464.5 700 43.3
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.3e-128 464.5 417 59.5
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.8e-109 401.7 1070 30.6
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.6e-92 344.7 337 54.0
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.3e-83 315.8 266 61.7
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.3e-83 315.8 266 61.7
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 2.9e-75 288.1 238 63.4
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 8.3e-54 216.9 226 54.0
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 4.2e-50 204.5 177 61.0
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 5.2e-48 197.6 186 57.0
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 9.8e-47 193.4 165 61.8
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.0e-45 187.2 159 60.4
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 2.0e-39 169.1 143 63.6
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.6e-39 168.7 104 75.0
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 8.3e-38 163.7 143 62.9
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 4.0e-32 144.8 1096 23.4
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.5e-31 142.9 149 55.0
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 5.8e-31 141.0 226 39.4
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 6.6e-27 127.5 119 62.2
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 4.9e-22 111.3 120 45.0
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 1.1e-21 110.2 120 44.2
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 5.4e-21 107.8 136 47.1
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 5.1e-19 101.3 167 38.3
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 6.6e-19 100.9 144 36.1
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 1.2e-17 96.7 93 52.7
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 2.8e-17 95.5 506 23.9
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 5.8e-15 87.8 62 67.7
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 2.2e-14 85.9 113 43.4
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 7.8e-12 77.4 98 39.8
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 1.1e-10 73.6 151 33.1
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 2.5e-10 72.4 115 40.9
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 3.3e-10 72.0 142 35.9


User provided reference genes

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