Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 3.8e-88 328.2 171 100.0
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 4.6e-57 224.9 171 68.4
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 8.6e-56 220.7 171 65.5
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 9.5e-55 217.2 172 67.4
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 2.1e-49 199.5 177 60.5
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 1.9e-47 193.0 151 64.9
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 6.8e-45 184.5 171 57.9
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 3.2e-42 175.6 175 55.4
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 7.8e-41 171.0 177 54.8
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 4.4e-36 155.2 175 53.7
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 9.9e-36 154.1 181 51.4
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 3.8e-35 152.1 181 50.3
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 8.4e-35 151.0 175 51.4
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 1.9e-34 149.8 181 49.7
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 3.0e-32 142.5 182 48.4
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 6.2e-30 134.8 169 47.9
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 4.5e-28 128.6 102 66.7
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 1.2e-25 120.6 102 59.8
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 1.2e-25 120.6 95 63.2
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 2.7e-25 119.4 104 57.7
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 3.5e-25 119.0 88 62.5
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 6.0e-25 118.2 85 65.9
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.0e-24 117.5 95 62.1
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.3e-24 117.1 91 62.6
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.3e-24 117.1 95 61.1
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.8e-24 116.7 95 61.1
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 1.8e-24 116.7 92 63.0
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 2.3e-24 116.3 105 56.2
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 2.3e-24 116.3 118 52.5
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 3.0e-24 115.9 83 68.7
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 3.0e-24 115.9 108 57.4
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 3.0e-24 115.9 92 62.0
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 3.0e-24 115.9 84 66.7
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 3.9e-24 115.5 92 60.9
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 6.7e-24 114.8 105 54.3
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 8.7e-24 114.4 95 60.0
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 8.7e-24 114.4 95 60.0
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 1.1e-23 114.0 117 53.8
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 1.5e-23 113.6 171 42.7
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.5e-23 113.6 93 61.3
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 1.9e-23 113.2 184 43.5
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 1.9e-23 113.2 109 53.2
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 3.3e-23 112.5 161 42.2
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 3.3e-23 112.5 83 65.1
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 3.3e-23 112.5 84 64.3
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 3.3e-23 112.5 86 60.5
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 3.3e-23 112.5 147 44.9
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 4.3e-23 112.1 81 66.7
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 4.3e-23 112.1 84 61.9
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 4.3e-23 112.1 84 61.9
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 4.3e-23 112.1 90 61.1
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 5.6e-23 111.7 90 60.0
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 5.6e-23 111.7 98 60.2
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 7.4e-23 111.3 89 61.8
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 7.4e-23 111.3 107 54.2
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 9.6e-23 110.9 171 42.7
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 9.6e-23 110.9 90 57.8
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 1.3e-22 110.5 147 43.5
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 1.6e-22 110.2 183 41.5
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.1e-22 109.8 84 60.7
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.1e-22 109.8 84 60.7
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 2.1e-22 109.8 83 65.1
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 2.8e-22 109.4 109 52.3
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 2.8e-22 109.4 83 62.7
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 4.8e-22 108.6 171 42.7
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 4.8e-22 108.6 82 64.6
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 4.8e-22 108.6 86 60.5
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 6.2e-22 108.2 92 57.6
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 6.2e-22 108.2 93 58.1
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 6.2e-22 108.2 92 58.7
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 8.1e-22 107.8 110 55.5
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 8.1e-22 107.8 163 40.5
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 1.1e-21 107.5 94 57.4
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 1.4e-21 107.1 93 60.2
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 1.8e-21 106.7 103 51.5
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 1.8e-21 106.7 101 54.5
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 2.4e-21 106.3 83 54.2
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 2.4e-21 106.3 104 54.8
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 3.1e-21 105.9 97 54.6
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 3.1e-21 105.9 97 54.6
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 4.0e-21 105.5 97 54.6
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 4.0e-21 105.5 97 53.6
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 4.0e-21 105.5 86 59.3
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 4.0e-21 105.5 96 56.2
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 5.3e-21 105.1 103 50.5
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 6.9e-21 104.8 107 53.3
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 9.0e-21 104.4 105 53.3
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 9.0e-21 104.4 84 58.3
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 9.0e-21 104.4 82 59.8
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 1.5e-20 103.6 172 42.4
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 1.5e-20 103.6 84 58.3
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.5e-20 103.6 90 54.4
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 2.0e-20 103.2 89 53.9
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 2.0e-20 103.2 174 39.1
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 2.0e-20 103.2 84 61.9
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 2.6e-20 102.8 103 50.5
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 3.4e-20 102.4 108 50.0
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 3.4e-20 102.4 84 57.1
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 7.6e-20 101.3 82 58.5
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 7.6e-20 101.3 103 53.4
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 1.0e-19 100.9 95 53.7
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.3e-19 100.5 82 58.5
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.3e-19 100.5 76 64.5
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.7e-19 100.1 89 55.1
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.2e-19 99.8 82 59.8
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.9e-19 99.4 82 61.0
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 4.9e-19 98.6 80 60.0
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 4.9e-19 98.6 81 59.3
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 6.5e-19 98.2 85 57.6
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 6.5e-19 98.2 97 53.6
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.4e-18 97.1 80 58.8
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 1.9e-18 96.7 87 60.9
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 2.5e-18 96.3 82 54.9
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 2.5e-18 96.3 93 52.7
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 2.5e-18 96.3 103 49.5
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 5.5e-18 95.1 84 59.5
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 7.1e-18 94.7 81 55.6
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 9.3e-18 94.4 81 54.3
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 9.3e-18 94.4 81 55.6
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 9.3e-18 94.4 81 55.6
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 1.2e-17 94.0 91 51.6
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 3.5e-17 92.4 81 53.1
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.6e-17 92.0 73 63.0
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.3e-16 90.5 70 62.9
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.3e-16 90.5 70 62.9
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 1.3e-16 90.5 84 56.0
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.8e-16 90.1 78 56.4
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 2.3e-16 89.7 82 50.0
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 3.0e-16 89.4 84 54.8
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 1.1e-15 87.4 90 50.0
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 1.1e-15 87.4 80 53.8
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 3.3e-15 85.9 76 52.6
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 9.6e-15 84.3 82 50.0
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 9.6e-15 84.3 74 56.8
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 3.7e-14 82.4 67 56.7
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 8.2e-14 81.3 95 48.4
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 1.1e-13 80.9 75 56.0
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.8e-13 80.1 95 46.3
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 7.6e-12 74.7 81 44.4
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 7.6e-12 74.7 81 44.4
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 1.9e-10 70.1 77 50.6
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 1.9e-10 70.1 77 50.6
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 2.1e-09 66.6 69 50.7
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 5.1e-08 62.0 81 42.0
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 8.7e-08 61.2 78 46.2
Actinidia19406 Actinidia chinensis HOM05D005289 ORTHO05D006346 2.2e-06 56.6 36 66.7


User provided reference genes

Program Settings