Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 5.5e-220 767.3 380 100.0
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 1.9e-180 636.0 384 82.3
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 3.3e-180 635.2 384 82.3
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 1.5e-172 609.8 384 79.9
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 6.2e-171 604.4 383 78.9
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 1.3e-168 596.7 382 77.7
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 9.2e-167 590.5 390 75.9
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 1.0e-165 587.0 399 74.7
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 2.5e-164 582.4 381 76.4
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 4.7e-163 578.2 390 72.8
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 8.1e-163 577.4 393 74.3
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 1.2e-161 573.5 391 74.4
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 2.6e-161 572.4 387 73.9
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 1.3e-160 570.1 395 73.2
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 1.4e-159 566.6 387 73.6
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 2.4e-159 565.8 384 73.4
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 4.1e-159 565.1 383 74.9
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 7.1e-159 564.3 380 74.2
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 7.1e-159 564.3 380 74.2
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 7.1e-159 564.3 390 71.5
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 9.2e-159 563.9 392 71.9
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 1.2e-158 563.5 367 76.3
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 1.2e-158 563.5 382 74.3
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.2e-158 563.5 381 73.0
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.6e-158 563.1 384 72.9
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 2.1e-158 562.8 386 73.6
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 2.7e-158 562.4 382 74.1
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 3.5e-158 562.0 386 73.6
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 6.0e-158 561.2 384 72.7
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 7.8e-158 560.8 382 73.8
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 7.8e-158 560.8 391 72.4
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 1.7e-157 559.7 385 72.2
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 3.0e-157 558.9 390 71.5
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 3.0e-157 558.9 390 71.5
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 5.1e-157 558.1 383 74.2
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.1e-156 557.0 387 71.3
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 1.5e-156 556.6 397 70.0
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 1.9e-156 556.2 383 71.5
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 2.5e-156 555.8 387 73.4
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 3.3e-156 555.4 395 70.9
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 3.3e-156 555.4 387 73.1
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 1.2e-155 553.5 334 79.3
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 2.8e-155 552.4 393 69.0
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 6.2e-155 551.2 387 70.8
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 1.1e-154 550.4 390 72.3
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 1.4e-154 550.1 334 78.4
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 1.8e-154 549.7 391 70.6
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 2.4e-154 549.3 387 70.3
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 2.4e-154 549.3 395 70.4
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 4.0e-154 548.5 383 71.8
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 6.8e-154 547.7 387 70.3
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 1.2e-153 547.0 389 70.4
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 2.0e-153 546.2 367 73.0
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 5.8e-153 544.7 390 70.3
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 9.9e-153 543.9 389 70.2
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 2.2e-152 542.7 299 85.6
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 8.4e-152 540.8 384 71.1
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 1.1e-151 540.4 391 69.1
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 1.4e-151 540.0 382 72.3
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 3.2e-151 538.9 387 69.5
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 4.1e-151 538.5 385 70.1
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 4.1e-151 538.5 403 67.5
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 5.4e-151 538.1 384 70.1
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 5.4e-151 538.1 384 70.1
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 9.2e-151 537.3 387 69.5
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 1.2e-150 537.0 386 70.2
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 1.6e-150 536.6 391 70.1
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 7.8e-150 534.3 391 67.5
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 1.0e-149 533.9 387 69.3
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 1.7e-149 533.1 387 69.0
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 1.5e-148 530.0 374 71.7
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 1.6e-147 526.6 466 60.5
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 4.7e-147 525.0 433 62.1
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 2.4e-146 522.7 386 67.9
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 3.1e-146 522.3 388 65.5
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 9.0e-146 520.8 383 66.6
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 5.8e-145 518.1 381 67.2
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 1.9e-143 513.1 381 65.1
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 2.1e-142 509.6 493 56.4
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 2.3e-141 506.1 283 83.0
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 2.5e-140 502.7 385 66.8
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 1.6e-139 500.0 388 66.0
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 4.8e-139 498.4 384 64.8
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 6.9e-138 494.6 383 65.8
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 2.0e-137 493.0 382 66.5
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.3e-136 490.3 392 64.0
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 1.7e-136 490.0 425 60.0
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 2.9e-136 489.2 393 64.1
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 1.6e-134 483.4 393 63.1
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 4.6e-134 481.9 284 80.6
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 3.9e-133 478.8 390 63.3
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 7.4e-132 474.6 304 71.7
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 1.3e-131 473.8 296 74.3
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 9.0e-130 467.6 392 61.2
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 2.0e-129 466.5 392 61.5
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 3.7e-123 445.7 365 63.0
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 2.2e-115 419.9 393 59.0
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 1.1e-108 397.5 324 65.1
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 2.0e-105 386.7 228 78.1
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.0e-104 384.4 345 54.2
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 2.9e-104 382.9 293 60.4
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 6.1e-102 375.2 314 55.1
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 4.1e-98 362.5 213 77.5
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 4.1e-98 362.5 213 77.5
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 4.1e-98 362.5 213 77.5
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 3.5e-97 359.4 293 55.6
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 6.5e-96 355.1 232 70.3
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 5.5e-95 352.1 213 77.0
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.3e-91 340.9 251 68.9
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 5.7e-84 315.5 291 58.1
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 9.7e-84 314.7 290 49.7
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 1.4e-77 294.3 230 63.5
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 7.0e-74 282.0 304 43.8
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 7.7e-73 278.5 285 45.3
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 2.3e-72 276.9 177 72.9
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 1.8e-66 257.3 157 77.1
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 1.2e-65 254.6 278 44.2
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 3.5e-57 226.5 135 80.0
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 9.2e-42 175.3 172 58.7
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 2.3e-40 170.6 180 50.0
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 1.1e-39 168.3 161 49.7
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 2.4e-34 150.6 108 65.7
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 1.3e-32 144.8 97 66.0
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 4.3e-31 139.8 113 63.7
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 2.1e-25 120.9 87 64.4
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 6.6e-24 115.9 66 77.3
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 3.5e-17 93.6 49 83.7
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 3.5e-17 93.6 49 83.7
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 2.5e-10 70.9 109 44.0
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 3.3e-07 60.5 41 63.4
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 1.6e-06 58.2 43 62.8


User provided reference genes

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