Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 5.1e-301 1036.9 525 100.0
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.9e-109 400.6 831 35.0
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 6.0e-92 342.4 966 29.8
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 3.9e-91 339.7 646 35.1
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 2.1e-89 334.0 712 34.1
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 5.5e-85 319.3 697 33.1
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 6.7e-83 312.4 661 34.8
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 7.7e-71 272.3 693 30.9
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 3.2e-69 266.9 649 29.9
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 2.3e-67 260.8 642 32.6
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.1e-66 258.5 620 31.5
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 1.1e-66 258.5 679 30.5
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.1e-64 251.9 647 32.3
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.4e-64 251.5 674 29.7
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 1.0e-62 245.4 685 30.1
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 1.7e-62 244.6 682 30.5
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 2.2e-62 244.2 639 30.2
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.2e-60 238.4 677 30.9
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 2.1e-60 237.7 708 28.7
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.4e-59 235.0 301 43.2
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 2.0e-58 231.1 656 30.5
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 7.4e-58 229.2 631 30.0
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 9.7e-58 228.8 590 30.7
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 9.7e-58 228.8 379 37.5
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 8.2e-57 225.7 740 28.5
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 4.1e-56 223.4 667 28.3
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 5.3e-56 223.0 752 27.3
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 7.0e-56 222.6 674 29.8
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 9.1e-56 222.2 514 32.7
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 9.1e-56 222.2 573 29.3
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.2e-55 221.9 664 27.9
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 3.5e-55 220.3 667 29.5
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 3.5e-55 220.3 571 29.6
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 5.9e-55 219.5 617 28.7
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.3e-54 218.4 312 42.3
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 2.2e-54 217.6 296 40.9
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 2.2e-54 217.6 721 28.2
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 5.0e-54 216.5 620 28.7
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 5.5e-53 213.0 637 28.9
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 5.5e-53 213.0 607 28.3
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 5.5e-53 213.0 651 29.5
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 1.2e-52 211.8 671 28.9
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.2e-52 211.8 660 29.4
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.6e-52 211.5 691 27.9
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 2.7e-52 210.7 676 28.7
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 2.7e-52 210.7 307 40.7
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 6.1e-52 209.5 305 39.0
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 6.1e-52 209.5 673 28.5
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.8e-51 208.0 300 40.3
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 2.3e-51 207.6 329 38.9
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 4.0e-51 206.8 307 40.1
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 4.0e-51 206.8 670 29.4
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 5.2e-51 206.5 304 40.5
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 1.2e-50 205.3 307 39.4
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 3.3e-50 203.8 611 29.5
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 3.3e-50 203.8 307 40.1
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 5.7e-50 203.0 297 39.4
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 7.5e-50 202.6 368 36.4
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 7.5e-50 202.6 307 40.7
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 9.7e-50 202.2 307 39.1
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.3e-49 201.8 302 38.7
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 1.7e-49 201.4 611 28.0
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 2.2e-49 201.1 609 28.9
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 8.2e-49 199.1 304 41.4
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.1e-48 198.7 311 39.5
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.1e-48 198.7 303 39.3
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 1.8e-48 198.0 329 38.9
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 1.8e-48 198.0 614 27.7
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.8e-48 198.0 411 33.8
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 2.4e-48 197.6 631 28.8
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 3.1e-48 197.2 613 27.9
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.1e-48 196.8 312 37.5
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.1e-48 196.8 308 39.0
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 7.0e-48 196.1 296 39.2
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.2e-47 195.3 300 38.3
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.0e-47 194.5 310 40.0
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 2.7e-47 194.1 306 39.9
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 4.5e-47 193.4 297 39.7
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 4.5e-47 193.4 306 38.9
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 5.9e-47 193.0 307 39.7
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 7.7e-47 192.6 303 38.6
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.0e-46 192.2 321 37.1
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.0e-46 192.2 309 40.5
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.9e-46 190.7 377 34.5
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 3.8e-46 190.3 303 39.6
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 3.8e-46 190.3 335 37.0
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 6.5e-46 189.5 329 35.0
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.9e-45 188.0 304 38.5
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.2e-45 187.2 747 26.6
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 4.2e-45 186.8 280 38.6
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 4.2e-45 186.8 301 38.2
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.5e-45 186.4 281 40.6
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.1e-44 184.5 333 36.0
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 3.6e-44 183.7 303 37.6
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.7e-44 183.3 723 27.4
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 4.7e-44 183.3 306 39.2
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 8.0e-44 182.6 271 41.3
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 8.0e-44 182.6 289 34.9
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 1.8e-43 181.4 291 35.1
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 4.0e-43 180.3 301 37.5
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 6.8e-43 179.5 681 25.3
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.8e-43 179.5 329 37.1
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.4e-42 176.8 576 26.7
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 3.7e-41 173.7 323 36.8
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.4e-40 171.8 537 27.7
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.2e-39 168.7 325 36.9
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 2.7e-39 167.5 328 35.7
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 2.9e-38 164.1 273 37.7
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.5e-37 159.8 295 36.3
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 7.2e-37 159.5 329 35.0
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-36 158.7 266 35.3
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.6e-36 158.3 565 28.3
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.0e-35 154.1 482 28.4
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 7.5e-34 149.4 275 34.9
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.7e-33 148.3 489 28.0
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 3.7e-33 147.1 349 30.9
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.7e-31 141.0 217 38.7
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 2.9e-30 137.5 636 25.0
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 7.5e-26 122.9 205 35.1
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 2.9e-25 120.9 244 35.2
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 1.1e-24 119.0 519 24.3
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.8e-20 104.4 495 25.7
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 4.0e-19 100.5 216 32.9
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 2.6e-18 97.8 332 25.6
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 2.6e-18 97.8 154 37.7
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.0e-14 84.3 152 33.6
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.0e-14 84.3 152 33.6
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 5.0e-14 83.6 116 36.2
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 4.3e-13 80.5 252 29.4
Migut.C00084 Erythranthe guttata HOM05D042229 ORTHO05D035173 4.7e-12 77.0 68 50.0
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.1e-11 75.9 152 27.6
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 1.1e-11 75.9 132 33.3
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.8e-11 75.1 93 43.0
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 1.8e-11 75.1 159 32.1
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 4.0e-11 73.9 164 34.1
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.0e-11 73.9 134 38.1
Migut.E00887 Erythranthe guttata HOM05D042229 ORTHO05D035173 6.8e-11 73.2 63 54.0
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 6.8e-11 73.2 109 35.8
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 8.3e-09 66.2 164 29.3
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 2.1e-07 61.6 99 35.4
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 4.6e-07 60.5 154 32.5
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 1.0e-06 59.3 80 41.2
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 5.1e-06 57.0 142 29.6
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 6.6e-06 56.6 154 29.9
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 6.6e-06 56.6 63 46.0
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 8.6e-06 56.2 113 37.2


User provided reference genes

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