Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.9e-304 1047.3 534 100.0
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.1e-298 1029.2 534 98.3
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 4.8e-238 827.8 542 77.9
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 3.8e-227 791.6 544 75.4
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 3.8e-227 791.6 543 75.3
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 2.5e-226 788.9 554 74.2
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 2.1e-225 785.8 525 76.8
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.0e-224 783.5 542 74.5
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.7e-222 776.2 523 75.5
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 4.8e-222 774.6 544 73.9
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 4.8e-222 774.6 523 75.1
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 1.6e-220 769.6 523 74.6
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 4.5e-220 768.1 525 74.7
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 5.9e-220 767.7 523 74.6
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 7.7e-220 767.3 523 74.4
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 1.3e-219 766.5 527 74.4
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.6e-217 759.6 524 74.4
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 1.8e-216 756.1 527 75.1
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 2.3e-216 755.7 521 76.4
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 5.2e-216 754.6 532 73.3
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 4.4e-215 751.5 528 74.6
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.3e-214 750.0 538 71.4
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 1.7e-214 749.6 535 72.7
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 2.2e-214 749.2 520 74.4
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 2.8e-214 748.8 528 72.2
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 8.3e-214 747.3 528 72.9
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 5.4e-213 744.6 525 73.1
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.2e-212 743.4 531 72.7
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 1.7e-211 739.6 534 70.8
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 2.3e-211 739.2 531 72.7
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 2.3e-211 739.2 527 72.9
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 2.3e-211 739.2 529 73.0
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 3.8e-211 738.4 529 73.2
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 5.0e-211 738.0 526 73.4
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 8.6e-211 737.3 528 72.7
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 8.6e-211 737.3 536 71.6
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 1.5e-210 736.5 539 71.1
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.9e-210 736.1 524 71.9
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.5e-210 735.7 527 71.0
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 5.5e-210 734.6 527 72.7
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 5.5e-210 734.6 524 71.4
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 1.6e-209 733.0 521 71.2
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 2.1e-209 732.6 528 72.0
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 2.8e-209 732.3 526 72.2
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 3.6e-209 731.9 529 72.2
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 4.7e-209 731.5 586 66.2
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 6.1e-209 731.1 523 72.3
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 8.0e-209 730.7 539 70.9
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 2.3e-208 729.2 529 71.8
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 4.0e-208 728.4 529 71.3
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 4.0e-208 728.4 525 72.4
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 6.8e-208 727.6 539 70.3
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 6.8e-208 727.6 531 71.0
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 8.9e-208 727.2 529 71.3
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 8.9e-208 727.2 529 71.3
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 8.9e-208 727.2 529 71.3
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 1.2e-207 726.9 526 71.5
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 1.2e-207 726.9 522 69.7
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 2.6e-207 725.7 526 70.7
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 2.6e-207 725.7 529 70.3
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.4e-207 725.3 524 71.6
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 9.8e-207 723.8 527 70.8
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 2.2e-206 722.6 524 71.0
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.2e-206 722.6 530 71.1
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 3.7e-206 721.8 529 70.3
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 8.3e-206 720.7 529 69.9
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 8.3e-206 720.7 529 69.8
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 9.2e-205 717.2 528 68.8
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 1.2e-204 716.8 527 71.0
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 4.5e-204 714.9 526 70.7
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.5e-202 709.9 537 68.5
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 1.9e-202 709.5 518 70.5
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.3e-202 708.8 537 68.3
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 1.2e-201 706.8 520 70.4
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 2.8e-201 705.7 550 68.5
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 3.0e-200 702.2 491 74.1
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 4.0e-200 701.8 568 66.2
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 4.0e-200 701.8 535 67.7
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 5.2e-200 701.4 521 69.9
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 2.9e-198 695.7 530 67.4
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 3.5e-196 688.7 539 66.8
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 3.5e-196 688.7 534 66.9
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 6.0e-196 688.0 526 67.7
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 9.5e-194 680.6 493 70.0
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 9.5e-194 680.6 477 72.5
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 1.2e-193 680.2 535 66.4
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.6e-193 679.9 485 72.8
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.1e-192 677.2 515 67.6
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.0e-191 672.9 487 71.3
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 4.9e-190 668.3 527 67.6
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 4.1e-189 665.2 524 66.6
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 4.3e-186 655.2 541 65.4
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 2.1e-180 636.3 489 68.3
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 9.2e-173 610.9 531 62.5
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 4.7e-169 598.6 573 60.6
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 6.4e-166 588.2 413 72.4
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 2.1e-164 583.2 551 58.8
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.6e-159 566.2 410 71.2
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 1.6e-156 557.0 411 69.6
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.0e-126 458.0 553 47.4
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 3.8e-118 429.5 352 65.1
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 1.2e-116 424.5 545 47.7
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 2.0e-111 407.1 530 42.8
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.6e-108 397.5 560 41.8
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 5.2e-107 392.5 528 43.8
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 8.3e-105 385.2 557 40.9
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 4.5e-103 379.4 294 68.4
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.9e-102 376.7 263 72.6
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.5e-101 374.4 264 72.7
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 4.7e-100 369.4 292 66.1
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 4.7e-100 369.4 315 61.3
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 8.8e-99 365.2 546 38.6
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 1.3e-86 324.7 412 43.7
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 4.1e-72 276.6 173 78.0
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 9.2e-72 275.4 318 50.9
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 1.5e-66 258.1 641 28.7
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 8.1e-60 235.7 222 58.6
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 8.1e-52 209.1 162 66.7
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.1e-51 208.8 284 47.2
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 2.0e-50 204.5 158 65.2
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 9.3e-48 195.7 99 88.9
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 1.3e-46 191.8 174 56.9
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 3.0e-46 190.7 701 25.8
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.1e-37 162.2 115 70.4
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.0e-33 149.1 110 72.7
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 3.5e-31 140.6 123 59.3
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 1.6e-28 131.7 187 39.0
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.1e-28 131.3 97 68.0
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 1.7e-25 121.7 77 79.2
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.5e-18 97.1 88 53.4
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 8.5e-17 92.8 93 52.7
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.8e-14 85.1 51 82.4
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 3.4e-10 70.9 119 37.8
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 7.9e-07 59.7 52 65.4
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 1.8e-06 58.5 192 30.2


User provided reference genes

Program Settings