Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 3.9e-41 171.0 85 100.0
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 9.6e-24 113.2 85 69.4
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 3.1e-22 108.2 85 67.1
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 1.0e-20 103.2 83 63.9
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 2.2e-20 102.1 85 60.0
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 4.9e-20 100.9 85 60.0
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 6.5e-20 100.5 85 62.4
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 8.4e-20 100.1 85 62.4
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 1.1e-19 99.8 85 62.4
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-19 99.8 85 62.4
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-19 99.8 85 62.4
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-19 99.8 85 62.4
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 5.5e-19 97.4 85 60.0
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 7.1e-19 97.1 88 61.4
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 9.3e-19 96.7 86 64.0
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 1.2e-18 96.3 64 73.4
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.6e-18 95.9 84 60.7
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 2.1e-18 95.5 83 62.7
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 4.6e-18 94.4 70 65.7
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 4.6e-18 94.4 85 55.3
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 4.6e-18 94.4 74 63.5
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 4.6e-18 94.4 80 56.2
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 6.0e-18 94.0 85 55.3
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 7.9e-18 93.6 80 57.5
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 7.9e-18 93.6 83 57.8
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 1.0e-17 93.2 85 61.2
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 1.0e-17 93.2 69 68.1
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 1.0e-17 93.2 84 57.1
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 1.0e-17 93.2 66 69.7
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 1.3e-17 92.8 82 56.1
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.3e-17 92.0 78 57.7
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 3.0e-17 91.7 68 67.6
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 3.9e-17 91.3 85 58.8
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 3.9e-17 91.3 64 70.3
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 3.9e-17 91.3 85 58.8
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 5.1e-17 90.9 70 64.3
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 6.7e-17 90.5 83 59.0
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 8.7e-17 90.1 85 54.1
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 1.1e-16 89.7 82 58.5
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 1.1e-16 89.7 82 56.1
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 1.5e-16 89.4 85 54.1
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 1.5e-16 89.4 83 59.0
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 1.9e-16 89.0 70 64.3
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 2.5e-16 88.6 70 58.6
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 3.3e-16 88.2 77 55.8
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 3.3e-16 88.2 70 58.6
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 3.3e-16 88.2 73 58.9
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 4.3e-16 87.8 66 63.6
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 7.4e-16 87.0 85 50.6
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 9.7e-16 86.7 85 50.6
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.6e-15 85.9 116 44.8
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 2.2e-15 85.5 85 51.8
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 2.8e-15 85.1 78 55.1
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 3.7e-15 84.7 63 66.7
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.7e-15 84.7 110 48.2
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 4.8e-15 84.3 85 50.6
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 4.8e-15 84.3 85 50.6
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 4.8e-15 84.3 83 51.8
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 8.2e-15 83.6 80 55.0
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 8.2e-15 83.6 70 60.0
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 1.1e-14 83.2 71 54.9
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 1.1e-14 83.2 65 61.5
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 1.4e-14 82.8 85 50.6
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 1.8e-14 82.4 85 51.8
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 1.8e-14 82.4 71 52.1
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 1.8e-14 82.4 70 61.4
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 3.1e-14 81.6 85 50.6
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 5.3e-14 80.9 83 53.0
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 6.9e-14 80.5 63 63.5
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 6.9e-14 80.5 63 63.5
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.2e-13 79.7 71 49.3
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 3.4e-13 78.2 64 62.5
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 3.4e-13 78.2 64 62.5
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 3.4e-13 78.2 64 62.5
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 3.4e-13 78.2 64 62.5
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 3.4e-13 78.2 81 51.9
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 4.5e-13 77.8 64 60.9
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 4.5e-13 77.8 82 52.4
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 7.7e-13 77.0 84 46.4
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 7.7e-13 77.0 60 65.0
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 1.0e-12 76.6 63 61.9
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 1.7e-12 75.9 70 52.9
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.7e-12 75.9 69 50.7
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 3.8e-12 74.7 70 51.4
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 5.0e-12 74.3 84 45.2
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 8.5e-12 73.6 38 86.8
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 1.4e-11 72.8 56 60.7
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 1.9e-11 72.4 38 86.8
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 7.2e-11 70.5 64 53.1
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.2e-10 69.7 38 84.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.6e-10 69.3 55 63.6
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.9e-09 64.7 38 76.3
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 3.9e-09 64.7 38 73.7
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.7e-09 63.9 85 45.9


User provided reference genes

Program Settings