Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 0.0e+00 1291.2 640 100.0
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 8.5e-298 1026.5 651 76.7
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 1.4e-287 992.6 646 75.4
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 4.7e-280 967.6 653 72.9
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 4.7e-280 967.6 653 72.9
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 7.0e-268 927.2 642 69.9
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 3.8e-266 921.4 636 70.8
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 3.8e-266 921.4 642 69.3
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 6.1e-264 914.1 664 67.3
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 1.2e-262 909.8 642 68.8
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 2.6e-262 908.7 643 69.2
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 7.5e-262 907.1 643 69.2
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 8.3e-261 903.7 656 67.7
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 1.3e-258 896.3 653 66.8
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 2.1e-256 889.0 670 66.3
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 7.5e-254 880.6 624 67.1
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 1.1e-252 876.7 648 66.7
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 2.4e-252 875.5 645 66.4
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 5.9e-251 870.9 643 65.0
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 5.0e-250 867.8 632 66.6
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 5.0e-250 867.8 622 66.6
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 3.3e-249 865.1 650 65.1
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 8.0e-248 860.5 630 66.7
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 1.4e-247 859.8 649 64.1
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 3.1e-247 858.6 634 65.9
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 4.0e-247 858.2 632 65.7
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 5.2e-247 857.8 634 65.6
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 8.9e-247 857.1 646 65.2
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 7.5e-246 854.0 651 64.4
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 7.5e-246 854.0 642 64.6
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 2.2e-245 852.4 644 64.1
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 3.7e-245 851.7 636 65.3
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 8.3e-245 850.5 656 64.3
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 1.9e-244 849.4 635 64.9
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 3.2e-244 848.6 658 64.1
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 5.4e-244 847.8 641 64.0
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 5.0e-242 841.3 654 63.6
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.9e-241 839.3 672 62.1
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 3.3e-241 838.6 636 64.5
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 4.3e-241 838.2 637 63.9
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 7.3e-241 837.4 661 62.8
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.2e-240 836.6 645 64.0
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 4.7e-240 834.7 646 63.6
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.4e-239 833.2 640 64.4
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 3.1e-239 832.0 633 64.5
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.6e-238 828.9 654 63.0
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 9.8e-238 827.0 654 62.8
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 1.7e-237 826.2 642 62.0
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 2.2e-237 825.9 639 62.9
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 2.9e-237 825.5 649 62.9
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 8.3e-237 823.9 620 65.0
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 1.1e-236 823.5 648 62.3
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 7.1e-236 820.8 635 64.7
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 9.2e-236 820.5 634 64.7
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 1.2e-235 820.1 643 63.0
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 3.5e-235 818.5 633 63.2
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 3.9e-234 815.1 594 65.5
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 8.6e-234 813.9 584 68.0
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 5.6e-233 811.2 653 62.9
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 5.6e-233 811.2 637 63.1
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 1.6e-232 809.7 630 64.0
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 2.8e-232 808.9 653 62.5
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 2.8e-232 808.9 636 64.5
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 3.6e-232 808.5 643 63.3
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 6.8e-231 804.3 627 64.4
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 6.8e-231 804.3 637 63.3
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 8.9e-231 803.9 645 62.5
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 1.2e-230 803.5 649 61.8
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 5.8e-230 801.2 638 61.9
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 5.8e-230 801.2 694 58.8
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 1.7e-229 799.7 639 62.4
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 1.7e-229 799.7 640 62.2
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 2.2e-229 799.3 640 59.8
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 1.9e-228 796.2 640 61.9
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 7.1e-228 794.3 662 61.3
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 1.7e-226 789.6 635 61.4
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 1.9e-225 786.2 632 62.0
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 5.2e-223 778.1 647 59.2
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 6.8e-223 777.7 626 61.8
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 1.5e-222 776.5 661 59.6
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 5.8e-222 774.6 639 61.5
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 6.0e-219 764.6 641 60.1
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.7e-218 763.1 638 59.6
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 5.6e-217 758.1 583 63.3
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 1.5e-214 750.0 625 59.8
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 4.3e-209 731.9 618 59.1
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 3.3e-201 705.7 490 69.4
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 9.0e-191 671.0 632 54.6
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 1.7e-189 666.8 531 62.0
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 3.9e-186 655.6 451 70.3
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 1.5e-177 627.1 610 52.6
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 4.3e-177 625.5 613 53.3
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 1.8e-167 593.6 628 50.2
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 4.2e-156 555.8 498 57.2
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 1.2e-153 547.7 624 48.4
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 4.5e-150 535.8 428 62.4
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 2.3e-146 523.5 358 68.2
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 7.3e-132 475.3 328 68.6
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 1.1e-127 461.5 457 52.3
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 1.9e-127 460.7 331 66.5
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 1.4e-98 364.8 414 49.0
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 5.3e-74 283.1 265 53.6
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 7.4e-68 262.7 189 61.9
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 6.5e-64 249.6 196 62.8
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 5.1e-61 240.0 202 59.9
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 1.2e-49 202.2 175 56.6
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 2.0e-49 201.4 189 54.0
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 2.0e-49 201.4 128 70.3
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 1.4e-45 188.7 164 59.1
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 3.8e-40 170.6 127 63.8
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 4.7e-38 163.7 170 50.0
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 2.5e-31 141.4 109 61.5
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 7.2e-31 139.8 74 83.8
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 1.2e-28 132.5 112 58.0
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 1.5e-23 115.5 70 77.1
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 8.9e-21 106.3 84 57.1


User provided reference genes

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