Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.3e-157 559.7 281 100.0
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.6e-150 535.4 278 96.4
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.2e-126 456.8 279 81.0
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.5e-126 456.4 277 82.7
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 6.0e-123 444.5 288 76.4
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 7.9e-115 417.5 280 73.2
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 7.9e-115 417.5 248 83.5
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 3.0e-114 415.6 284 71.8
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 3.0e-114 415.6 284 71.8
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 5.7e-113 411.4 280 72.9
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.3e-112 410.2 280 72.5
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 2.8e-112 409.1 277 72.6
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.8e-111 406.4 279 70.6
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.8e-111 406.4 279 70.6
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 1.8e-111 406.4 280 71.8
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 2.4e-111 406.0 277 71.5
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 9.0e-111 404.1 280 71.4
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 2.0e-110 402.9 279 72.8
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 4.5e-110 401.7 281 71.5
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 4.5e-110 401.7 282 71.3
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 5.9e-110 401.4 279 71.7
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 7.6e-110 401.0 282 70.2
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 1.7e-109 399.8 281 71.2
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.7e-109 399.8 279 71.0
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 1.7e-109 399.8 283 71.7
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 2.2e-109 399.4 279 70.3
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 2.2e-109 399.4 277 71.8
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 5.0e-109 398.3 277 71.1
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 5.0e-109 398.3 283 70.7
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 6.5e-109 397.9 283 70.7
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 2.5e-108 396.0 279 69.9
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 2.5e-108 396.0 279 70.6
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 3.2e-108 395.6 278 69.1
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 7.2e-108 394.4 286 68.5
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 9.3e-108 394.0 281 70.8
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 9.3e-108 394.0 279 70.6
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.2e-107 393.7 286 68.5
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 3.6e-107 392.1 280 70.7
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 3.6e-107 392.1 279 69.9
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 3.6e-107 392.1 279 69.9
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.6e-107 391.7 279 70.6
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 4.6e-107 391.7 279 70.3
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 4.6e-107 391.7 279 69.5
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.1e-107 391.3 279 70.3
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 6.1e-107 391.3 276 68.1
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 7.9e-107 391.0 279 70.6
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.0e-106 389.0 279 69.9
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 3.9e-106 388.7 280 66.4
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 3.9e-106 388.7 278 71.2
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 3.9e-106 388.7 280 69.3
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 6.7e-106 387.9 280 68.6
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 8.7e-106 387.5 280 68.6
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 1.9e-105 386.3 281 70.1
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 4.3e-105 385.2 276 67.8
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 5.7e-105 384.8 332 60.2
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 5.7e-105 384.8 313 64.9
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 7.4e-105 384.4 279 69.2
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 7.4e-105 384.4 280 68.6
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 7.4e-105 384.4 280 68.6
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 1.3e-104 383.6 279 68.5
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.3e-104 383.6 279 67.0
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 2.2e-104 382.9 278 66.2
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.8e-104 382.5 279 69.5
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 8.2e-104 380.9 280 66.4
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 1.1e-103 380.6 281 69.8
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 4.1e-103 378.6 297 63.0
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 4.1e-103 378.6 281 68.3
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 6.9e-103 377.9 270 67.8
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 9.1e-103 377.5 269 71.4
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 2.0e-102 376.3 279 67.7
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.0e-101 374.0 276 65.9
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.7e-101 373.2 279 66.3
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 2.2e-101 372.9 281 66.2
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 4.2e-100 368.6 279 65.6
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 7.2e-100 367.9 280 66.4
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 9.4e-100 367.5 278 65.1
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.2e-99 367.1 281 65.5
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 7.9e-99 364.4 279 66.7
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 7.9e-99 364.4 279 67.7
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 7.9e-99 364.4 281 65.5
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 1.0e-98 364.0 281 64.8
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 1.8e-98 363.2 279 64.5
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.8e-98 363.2 280 66.1
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 3.0e-98 362.5 279 64.5
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 3.9e-98 362.1 281 64.4
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 6.7e-98 361.3 277 64.3
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 8.8e-98 360.9 281 64.1
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 8.8e-98 360.9 280 64.6
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 7.4e-97 357.8 278 63.7
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 2.2e-96 356.3 279 64.2
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.2e-96 356.3 279 64.5
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 2.8e-96 355.9 277 63.2
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 4.8e-96 355.1 293 62.1
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 1.8e-95 353.2 280 63.6
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 6.5e-93 344.7 282 62.4
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 1.8e-90 336.7 277 58.8
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 2.6e-89 332.8 280 59.3
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 3.7e-88 328.9 224 72.3
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 4.1e-87 325.5 233 69.5
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 8.5e-85 317.8 203 75.9
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 1.9e-84 316.6 277 56.0
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 2.2e-80 303.1 274 56.9
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-79 300.4 205 73.2
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 3.1e-79 299.3 184 78.8
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-78 296.6 201 73.1
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 7.7e-78 294.7 202 73.3
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.9e-77 292.7 239 63.6
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 5.5e-76 288.5 203 68.5
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 4.8e-72 275.4 205 68.3
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.4e-71 273.9 304 49.0
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 5.0e-69 265.4 190 68.4
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.5e-68 263.1 201 67.2
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 3.2e-68 262.7 275 50.2
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 9.2e-63 244.6 192 65.6
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.4e-55 219.9 205 60.0
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 7.0e-55 218.4 131 80.9
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 3.6e-51 206.1 143 69.9
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 4.1e-47 192.6 283 41.7
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 5.2e-42 175.6 286 40.2
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 3.7e-40 169.5 117 73.5
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 6.4e-40 168.7 321 36.8
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 7.8e-30 135.2 126 57.9
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 8.1e-27 125.2 82 70.7
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.1e-26 124.8 90 67.8
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 8.4e-24 115.2 86 64.0
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 8.4e-24 115.2 86 64.0
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 8.4e-24 115.2 86 64.0
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.6e-19 100.9 86 52.3
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 2.1e-19 100.5 69 72.5
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 4.0e-18 96.3 71 67.6
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 7.6e-17 92.0 76 59.2
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 4.2e-15 86.3 85 51.8
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-13 81.6 54 70.4
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 3.0e-13 80.1 57 63.2
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 5.1e-13 79.3 61 63.9
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 5.1e-13 79.3 61 63.9
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 9.0e-10 68.6 41 85.4
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 2.4e-07 60.5 43 67.4
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 3.2e-07 60.1 45 68.9


User provided reference genes

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