Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 2.0e-220 768.8 397 100.0
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 2.6e-164 582.4 397 73.6
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 3.3e-159 565.5 393 71.8
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 1.9e-151 539.7 423 67.4
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 3.2e-146 522.3 393 69.0
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 7.9e-145 517.7 379 68.1
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 1.4e-136 490.3 397 64.2
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 8.8e-136 487.6 396 63.4
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 3.3e-135 485.7 385 64.9
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 1.7e-134 483.4 410 63.2
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 2.2e-134 483.0 389 63.5
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 4.8e-134 481.9 394 63.5
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 4.8e-134 481.9 392 65.1
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 8.2e-134 481.1 396 60.6
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 3.1e-133 479.2 387 63.8
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 4.1e-133 478.8 395 63.8
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 4.1e-133 478.8 392 64.8
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 2.0e-132 476.5 394 61.9
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 5.9e-132 474.9 391 63.9
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.3e-131 473.8 396 61.6
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 6.5e-131 471.5 387 61.8
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 8.5e-131 471.1 387 61.8
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 1.1e-130 470.7 389 62.5
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 1.4e-130 470.3 394 62.7
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.2e-130 468.8 395 62.0
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 7.2e-130 468.0 401 59.6
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 1.6e-129 466.8 398 62.1
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 1.8e-128 463.4 396 62.1
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 8.8e-128 461.1 389 63.2
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 1.5e-127 460.3 390 61.3
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 2.6e-127 459.5 389 63.0
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 3.3e-127 459.1 390 62.3
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 7.4e-127 458.0 389 60.9
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 2.2e-126 456.4 388 61.1
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 6.3e-126 454.9 388 60.3
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 8.2e-126 454.5 393 59.3
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 5.3e-125 451.8 393 60.3
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 3.5e-124 449.1 396 59.8
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 4.5e-124 448.7 386 60.6
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 1.7e-123 446.8 387 60.5
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 5.0e-123 445.3 392 60.7
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 1.5e-122 443.7 389 60.7
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 3.2e-122 442.6 392 59.4
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.2e-122 442.6 398 59.0
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 7.2e-122 441.4 390 59.2
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 9.4e-122 441.0 398 58.8
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 1.6e-121 440.3 379 60.4
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 2.1e-121 439.9 398 59.3
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 4.7e-121 438.7 382 59.9
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 4.7e-121 438.7 383 60.8
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 8.0e-121 438.0 374 62.0
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 1.0e-120 437.6 380 58.7
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 5.2e-120 435.3 388 58.2
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 5.2e-120 435.3 384 60.9
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 3.4e-119 432.6 424 54.5
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 5.9e-116 421.8 377 59.2
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 4.2e-114 415.6 357 60.2
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.2e-113 414.1 394 57.9
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 6.1e-113 411.8 388 56.4
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.0e-112 411.0 386 57.8
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 4.0e-112 409.1 421 54.9
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 3.4e-111 406.0 421 54.6
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 8.3e-110 401.4 417 54.7
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 8.3e-110 401.4 392 54.6
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 7.7e-108 394.8 385 54.5
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 1.0e-107 394.4 403 55.3
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 1.0e-107 394.4 323 63.8
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 6.6e-107 391.7 397 52.6
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.9e-106 390.2 376 55.9
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 2.3e-104 383.3 382 53.4
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 3.0e-104 382.9 389 57.3
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 3.2e-101 372.9 386 52.3
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 5.4e-101 372.1 398 52.0
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 1.6e-100 370.5 388 55.4
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 7.8e-100 368.2 384 51.0
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 7.8e-100 368.2 384 49.5
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.3e-99 366.7 314 61.8
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 3.3e-98 362.8 389 51.2
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 2.8e-97 359.8 388 49.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.2e-95 354.4 378 51.1
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 1.5e-95 354.0 384 49.5
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.0e-95 353.6 294 62.9
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 5.8e-95 352.1 287 63.4
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 7.5e-95 351.7 386 49.7
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 1.3e-94 350.9 386 49.5
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 3.2e-93 346.3 383 49.6
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 2.7e-92 343.2 389 47.8
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 2.7e-92 343.2 389 47.6
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 7.8e-92 341.7 389 47.8
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 1.3e-91 340.9 389 47.8
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 1.7e-91 340.5 389 48.1
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 4.3e-90 335.9 379 50.9
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 9.5e-90 334.7 389 47.0
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 1.4e-88 330.9 372 48.9
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.4e-87 325.9 336 52.4
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.7e-86 323.9 336 52.4
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 1.6e-84 317.4 363 49.9
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 1.3e-83 314.3 411 44.0
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.2e-79 301.2 311 53.7
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.7e-78 296.2 388 47.2
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 5.1e-75 285.8 331 47.1
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.6e-73 280.8 350 47.7
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 3.6e-73 279.6 323 45.8
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 4.4e-71 272.7 376 44.4
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 1.5e-66 257.7 380 41.8
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.9e-66 257.3 351 45.3
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 4.2e-53 213.0 397 35.0
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 1.5e-50 204.5 330 39.1
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.8e-48 197.6 250 44.4
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 4.1e-40 169.9 202 46.5
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 1.2e-39 168.3 376 34.3
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 3.0e-35 153.7 193 44.6
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 3.0e-35 153.7 151 54.3
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 9.7e-34 148.7 176 50.0
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 5.9e-31 139.4 110 60.9
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 2.9e-30 137.1 168 43.5
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 2.9e-30 137.1 168 43.5
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 1.9e-29 134.4 373 30.3
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 7.2e-29 132.5 346 30.6
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.3e-27 127.5 162 45.1
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.0e-26 124.4 73 80.8
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 1.3e-25 121.7 197 39.6
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 2.4e-24 117.5 79 72.2
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 3.1e-24 117.1 123 52.0
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.5e-23 113.2 151 39.7
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.9e-22 110.5 75 74.7
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 6.1e-20 102.8 65 76.9
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.0e-18 97.8 114 43.9
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 5.3e-16 89.7 67 65.7
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 7.7e-15 85.9 74 62.2
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 7.7e-15 85.9 74 62.2
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.0e-14 85.5 108 46.3
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 5.3e-08 63.2 51 68.6
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 3.5e-07 60.5 60 50.0
QL04p046160 Quercus lobata HOM05D005911 ORTHO05D338257 4.5e-07 60.1 60 50.0
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 8.5e-06 55.8 394 23.1


User provided reference genes

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