Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01222 Erythranthe guttata HOM05D005925 ORTHO05D007270 6.6e-162 573.9 281 100.0
SalBow1G0951 Salvia bowleyana HOM05D005925 ORTHO05D007270 2.1e-131 472.6 281 81.9
SGA_v2.0_scaffold55G19820 Striga asiatica HOM05D005925 ORTHO05D007270 1.3e-130 469.9 281 80.8
MSTRG.27750 Avicennia marina HOM05D005925 ORTHO05D007270 6.7e-130 467.6 281 79.7
Oeu034077.1 Olea europaea HOM05D005925 ORTHO05D007270 1.1e-129 466.8 281 78.3
SalBow3G3631 Salvia bowleyana HOM05D005925 ORTHO05D007270 8.1e-128 460.7 281 79.7
CAN.G322.90 Capsicum annuum HOM05D005925 ORTHO05D007270 1.1e-119 433.7 281 71.9
vmacro22671 Vaccinium macrocarpon HOM05D005925 ORTHO05D007270 4.5e-118 428.3 282 71.6
Peaxi162Scf00016g01229 Petunia axillaris HOM05D005925 ORTHO05D007270 1.4e-116 423.3 281 71.2
Solyc01g109130.3 Solanum lycopersicum HOM05D005925 ORTHO05D007270 5.5e-116 421.4 281 70.1
Sopen01g051330 Solanum pennellii HOM05D005925 ORTHO05D007270 5.5e-116 421.4 281 70.1
TAR628G0202 Trochodendron aralioides HOM05D005925 ORTHO05D007270 7.1e-116 421.0 282 72.0
CiPaw.05G059200 Carya illinoinensis HOM05D005925 ORTHO05D007270 1.6e-115 419.9 282 69.5
Cc02_g18140 Coffea canephora HOM05D005925 ORTHO05D007270 1.6e-115 419.9 281 69.8
HanXRQChr10g0307581 Helianthus annuus HOM05D005925 ORTHO05D007270 1.6e-115 419.9 282 69.9
Thecc.02G029300 Theobroma cacao HOM05D005925 ORTHO05D007270 2.7e-115 419.1 282 68.8
Rhsim05G0078300 Rhododendron simsii HOM05D005925 ORTHO05D007270 3.5e-115 418.7 282 69.9
Cfa004956 Carpinus fangiana HOM05D005925 ORTHO05D007270 1.3e-114 416.8 282 69.9
Duzib248G1621 Durio zibethinus HOM05D005925 ORTHO05D007270 2.3e-114 416.0 282 68.8
Gorai.005G263900 Gossypium raimondii HOM05D005925 ORTHO05D007270 8.7e-114 414.1 282 69.1
DCAR_003633 Daucus carota HOM05D005925 ORTHO05D007270 1.9e-113 412.9 286 69.6
Gohir.D02G235800 Gossypium hirsutum HOM05D005925 ORTHO05D007270 4.3e-113 411.8 282 68.8
Gohir.A03G214300 Gossypium hirsutum HOM05D005925 ORTHO05D007270 9.6e-113 410.6 282 68.8
Manes.17G097200 Manihot esculenta HOM05D005925 ORTHO05D007270 1.3e-112 410.2 282 67.7
PGSC0003DMG400025833 Solanum tuberosum HOM05D005925 ORTHO05D007270 2.1e-112 409.5 281 68.7
Nitab4.5_0012894g0020 Nicotiana tabacum HOM05D005925 ORTHO05D007270 3.7e-112 408.7 291 68.4
QL11p039405 Quercus lobata HOM05D005925 ORTHO05D007270 4.8e-112 408.3 280 67.5
FvH4_5g27360 Fragaria vesca HOM05D005925 ORTHO05D007270 2.4e-111 406.0 283 67.8
Actinidia17837 Actinidia chinensis HOM05D005925 ORTHO05D007270 3.1e-111 405.6 282 68.1
GSVIVG01031883001 Vitis vinifera HOM05D005925 ORTHO05D007270 9.0e-111 404.1 283 68.9
Lsat_1_v5_gn_5_117341 Lactuca sativa HOM05D005925 ORTHO05D007270 2.0e-110 402.9 283 67.5
TWI31G0896 Tripterygium wilfordii HOM05D005925 ORTHO05D007270 3.4e-110 402.1 282 67.0
MD10G1085900 Malus domestica HOM05D005925 ORTHO05D007270 2.9e-109 399.1 284 68.0
FAN08G3356 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.8e-109 398.7 294 65.6
PGR142G0964 Punica granatum HOM05D005925 ORTHO05D007270 3.8e-109 398.7 282 67.4
RcHm_v2.0_Chr6g0261021 Rosa chinensis HOM05D005925 ORTHO05D007270 6.5e-109 397.9 283 67.8
Prupe.8G110200 Prunus persica HOM05D005925 ORTHO05D007270 8.5e-109 397.5 284 67.6
unitig_8.g3429 Utricularia gibba HOM05D005925 ORTHO05D007270 1.1e-108 397.1 261 72.4
FAN04G2258 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.2e-108 395.6 294 65.3
Potri.004G148500 Populus trichocarpa HOM05D005925 ORTHO05D007270 5.5e-108 394.8 282 67.4
Potri.004G148700 Populus trichocarpa HOM05D005925 ORTHO05D007270 5.5e-108 394.8 282 67.4
Ciclev10029009m.g Citrus clementina HOM05D005925 ORTHO05D007270 7.2e-108 394.4 282 67.4
ECA234G0394 Erigeron canadensis HOM05D005925 ORTHO05D000001 2.7e-107 392.5 271 67.5
PSO170G4903 Papaver somniferum HOM05D005925 ORTHO05D007270 7.9e-107 391.0 283 65.7
SGA_v2.0_scaffold13G06566 Striga asiatica HOM05D005925 ORTHO05D007270 2.3e-106 389.4 261 73.6
Sc14g0001730 Simmondsia chinensis HOM05D005925 ORTHO05D007270 6.7e-106 387.9 283 65.0
PSO700G0338 Papaver somniferum HOM05D005925 ORTHO05D007270 8.7e-106 387.5 283 65.4
Hund00298 Selenicereus undatus HOM05D005925 ORTHO05D007270 7.4e-105 384.4 283 64.7
Hund00305 Selenicereus undatus HOM05D005925 ORTHO05D007270 7.4e-105 384.4 283 64.7
QL09p038983 Quercus lobata HOM05D005925 ORTHO05D007270 9.7e-105 384.0 260 68.5
Lj3g0007485 Lotus japonicus HOM05D005925 ORTHO05D007270 2.8e-104 382.5 283 65.0
Aqoxy5G01754 Aquilegia oxysepala HOM05D005925 ORTHO05D007270 4.8e-104 381.7 281 66.2
COL.COLO4_17783 Corchorus olitorius HOM05D005925 ORTHO05D007270 6.3e-104 381.3 262 67.6
Eucgr.I01229 Eucalyptus grandis HOM05D005925 ORTHO05D007270 1.1e-103 380.6 282 64.2
CANSAT25G2034 Cannabis sativa HOM05D005925 ORTHO05D007270 4.1e-103 378.6 283 62.9
Lalb_Chr01g0002931 Lupinus albus HOM05D005925 ORTHO05D007270 6.9e-103 377.9 282 64.9
Glyma.12G047700 Glycine max HOM05D005925 ORTHO05D007270 1.2e-102 377.1 283 64.3
Carub.0003s1876 Capsella rubella HOM05D005925 ORTHO05D007270 4.5e-102 375.2 282 65.2
Glyma.11G122900 Glycine max HOM05D005925 ORTHO05D007270 4.5e-102 375.2 283 64.3
VMungo1127G2028 Vigna mungo HOM05D005925 ORTHO05D007270 4.5e-102 375.2 283 63.6
A05p30640 Brassica napus HOM05D005925 ORTHO05D007270 7.7e-102 374.4 282 64.2
Phvul.011G049700 Phaseolus vulgaris HOM05D005925 ORTHO05D007270 1.7e-101 373.2 282 63.1
ClCG02G005470 Citrullus lanatus HOM05D005925 ORTHO05D007270 5.0e-101 371.7 290 62.4
arahy.Tifrunner.gnm1.ann1.JZQ5CR Arachis hypogaea HOM05D005925 ORTHO05D007270 8.5e-101 370.9 283 63.3
Thhalv10021280m.g Eutrema salsugineum HOM05D005925 ORTHO05D007270 1.1e-100 370.5 282 63.8
Sp3g17030 Schrenkiella parvula HOM05D005925 ORTHO05D007270 1.9e-100 369.8 282 64.2
AT3G18940 Arabidopsis thaliana HOM05D005925 ORTHO05D007270 4.2e-100 368.6 282 63.5
Lj9C365T5 Lonicera japonica HOM05D005925 ORTHO05D007270 7.2e-100 367.9 255 69.4
TPR.G10224 Trifolium pratense HOM05D005925 ORTHO05D007270 7.2e-100 367.9 283 63.3
Medtr4g068475 Medicago truncatula HOM05D005925 ORTHO05D007270 2.1e-99 366.3 283 62.9
CARHR094360 Cardamine hirsuta HOM05D005925 ORTHO05D007270 2.7e-99 365.9 282 63.1
AL3G32330 Arabidopsis lyrata HOM05D005925 ORTHO05D007270 4.6e-99 365.2 284 63.0
arahy.Tifrunner.gnm1.ann1.EU6551 Arachis hypogaea HOM05D005925 ORTHO05D007270 4.6e-99 365.2 283 62.5
A03p40910 Brassica napus HOM05D005925 ORTHO05D007270 4.6e-99 365.2 283 64.3
BraA03t13250Z Brassica rapa HOM05D005925 ORTHO05D007270 4.6e-99 365.2 283 64.3
MELO3C018414.2 Cucumis melo HOM05D005925 ORTHO05D007270 4.6e-99 365.2 282 63.1
CsaV3_7G010150 Cucumis sativus L. HOM05D005925 ORTHO05D007270 4.6e-99 365.2 282 62.8
Psat7g207080 Pisum sativum HOM05D005925 ORTHO05D007270 1.8e-98 363.2 283 62.9
ATR0733G151 Amborella trichopoda HOM05D005925 ORTHO05D007270 2.3e-98 362.8 283 61.5
BcaB06g25946 Brassica carinata HOM05D005925 ORTHO05D007270 2.3e-98 362.8 282 63.1
Sed0018300 Sechium edule HOM05D005925 ORTHO05D007270 3.0e-98 362.5 282 63.5
C05p46520 Brassica napus HOM05D005925 ORTHO05D007270 3.9e-98 362.1 282 63.1
Ca_20823_v3 Cicer arietinum L. HOM05D005925 ORTHO05D007270 1.1e-97 360.5 283 61.8
Hma1.2p1_0584F.1_g183295 Hydrangea macrophylla HOM05D005925 ORTHO05D007270 1.1e-97 360.5 248 70.2
MBI16_g31334_MAGBIO Magnolia biondii HOM05D005925 ORTHO05D007270 3.3e-97 359.0 310 59.0
THA.LOC104803449 Tarenaya hassleriana HOM05D005925 ORTHO05D007270 3.3e-97 359.0 282 62.4
Ah.01g019810 Amaranthus hybridus HOM05D005925 ORTHO05D007270 7.4e-97 357.8 282 60.3
Sabra04G0098600 Salix brachista HOM05D005925 ORTHO05D007270 1.7e-96 356.7 352 53.7
CDE01G0621 Ceratophyllum demersum HOM05D005925 ORTHO05D007270 2.8e-96 355.9 281 62.3
EL10Ac9g21785 Beta vulgaris HOM05D005925 ORTHO05D007270 3.7e-96 355.5 262 64.9
Aa31LG8G5780 Aethionema arabicum HOM05D005925 ORTHO05D007270 1.4e-95 353.6 286 61.9
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.5e-94 350.1 267 64.4
Nn6g32156 Nelumbo nucifera HOM05D005925 ORTHO05D007270 2.9e-93 345.9 257 65.8
Os03g0766900 Oryza sativa ssp. japonica HOM05D005925 ORTHO05D007270 7.9e-91 337.8 283 58.3
Nitab4.5_0008189g0020 Nicotiana tabacum HOM05D005925 ORTHO05D007270 1.4e-90 337.0 287 58.9
Haze_02451 Corylus avellana HOM05D005925 ORTHO05D007270 3.9e-90 335.5 272 62.1
AUR62011394 Chenopodium quinoa HOM05D005925 ORTHO05D007270 5.2e-90 335.1 257 64.6
Actinidia27921 Actinidia chinensis HOM05D005925 ORTHO05D007270 7.4e-89 331.3 281 60.5
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.3e-85 320.5 256 62.1
Zm00001eb058630 Zea mays HOM05D005925 ORTHO05D007270 2.2e-85 319.7 262 59.2
BcaB04g19013 Brassica carinata HOM05D005925 ORTHO05D007270 2.7e-83 312.8 263 61.2
RcHm_v2.0_Chr6g0260971 Rosa chinensis HOM05D005925 ORTHO05D007270 3.0e-82 309.3 283 57.2
BcaC01g03666 Brassica carinata HOM05D005925 ORTHO05D007270 1.5e-81 307.0 280 56.8
C03p49920 Brassica napus HOM05D005925 ORTHO05D007270 9.7e-81 304.3 246 62.2
BolC3t17285H Brassica oleracea HOM05D005925 ORTHO05D007270 9.7e-81 304.3 246 62.2
Dinv23574 Davidia involucrata HOM05D005925 ORTHO05D007270 9.7e-81 304.3 206 69.4
FvH4_2g07422 Fragaria vesca HOM05D005925 ORTHO05D007270 4.8e-80 302.0 256 60.2
Cpa.g.sc62.88 Carica papaya HOM05D005925 ORTHO05D007270 2.0e-70 270.0 187 65.2
FAN15G3711 Fragaria x ananassa HOM05D001143 ORTHO05D001457 2.5e-68 263.1 192 68.2
HPP92_015723 Vanilla planifolia HOM05D005925 ORTHO05D007270 2.5e-68 263.1 217 60.4
Pp3c2_22470 Physcomitrium patens HOM05D005925 ORTHO05D007270 1.5e-65 253.8 278 47.5
Pp3c2_22478 Physcomitrium patens HOM05D005925 ORTHO05D007270 1.5e-65 253.8 278 47.5
Mapoly0073s0081 Marchantia polymorpha HOM05D005925 ORTHO05D007270 1.0e-58 231.1 281 45.9
FAN24G2811 Fragaria x ananassa HOM05D001143 ORTHO05D007270 3.4e-57 226.1 219 57.1
SMO115G0205 Selaginella moellendorffii HOM05D005925 ORTHO05D007270 2.0e-54 216.9 275 41.5
Atru.chr5.2901 Acer truncatum HOM05D005925 ORTHO05D007270 4.3e-52 209.1 134 75.4
Haze_02453 Corylus avellana HOM05D005925 ORTHO05D007270 1.6e-46 190.7 182 54.9
BolC5t33380H Brassica oleracea HOM05D005925 ORTHO05D007270 2.3e-45 186.8 134 68.7
BraA05t21906Z Brassica rapa HOM05D005925 ORTHO05D007270 5.0e-45 185.7 134 68.7
SEGI_41274 Sequoiadendron giganteum HOM05D005925 ORTHO05D007270 8.3e-40 168.3 152 53.9
CBR_g26043 Chara braunii HOM05D005925 ORTHO05D007270 3.6e-35 152.9 359 31.5
Atru.chr5.2902 Acer truncatum HOM05D005925 ORTHO05D007270 1.5e-33 147.5 93 71.0
AagrBONN_evm.TU.Sc2ySwM_228.3883 Anthoceros agrestis HOM05D005925 ORTHO05D007270 5.8e-33 145.6 183 41.5
RcHm_v2.0_Chr7g0218511 Rosa chinensis HOM05D005925 ORTHO05D007270 3.8e-32 142.9 201 41.3
FvH4_5g16250 Fragaria vesca HOM05D005925 ORTHO05D007270 1.0e-29 134.8 95 68.4
SEGI_01484 Sequoiadendron giganteum HOM05D005925 ORTHO05D007270 1.5e-25 120.9 96 63.5
FAN18G0119 Fragaria x ananassa HOM05D005925 ORTHO05D007270 6.4e-24 115.5 86 66.3
MCO11G864 Micromonas commoda HOM05D005925 ORTHO05D007270 2.4e-23 113.6 301 30.6
SMO115G0183 Selaginella moellendorffii HOM05D005925 ORTHO05D007270 7.1e-23 112.1 155 38.7
CDE02G0959 Ceratophyllum demersum HOM05D007402 ORTHO05D003673 1.3e-21 107.8 122 48.4
FAN20G1704 Fragaria x ananassa HOM05D005925 ORTHO05D007270 8.1e-19 98.6 67 65.7
Cre09.g399589 Chlamydomonas reinhardtii HOM05D005925 ORTHO05D007270 1.2e-09 68.2 263 25.5


User provided reference genes

Program Settings