Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 8.8e-154 547.0 285 100.0
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 3.1e-90 335.9 300 65.0
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 3.5e-86 322.4 302 62.9
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 5.1e-85 318.5 294 63.3
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 1.3e-80 303.9 302 60.3
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.9e-76 290.0 296 58.4
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 1.6e-75 287.0 299 56.9
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 6.2e-75 285.0 295 56.3
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.8e-72 275.8 293 59.0
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 6.4e-72 275.0 307 55.7
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 5.4e-71 271.9 300 54.3
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 6.6e-69 265.0 268 59.0
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 1.9e-68 263.5 296 56.1
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 1.9e-68 263.5 296 55.7
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 3.3e-68 262.7 296 55.7
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 1.3e-67 260.8 297 54.9
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 4.0e-66 255.8 315 51.4
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 5.8e-65 251.9 343 48.7
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 1.3e-64 250.8 288 54.2
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 1.9e-63 246.9 297 51.9
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 3.2e-63 246.1 305 52.1
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 2.3e-61 240.0 299 51.8
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.1e-60 237.7 313 50.5
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 5.6e-60 235.3 299 49.5
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 4.8e-59 232.3 298 48.7
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.4e-58 230.7 304 47.7
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 4.0e-58 229.2 288 48.6
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 3.4e-57 226.1 304 47.4
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.4e-57 226.1 297 50.5
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 5.8e-57 225.3 284 49.6
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 7.6e-57 224.9 299 48.8
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.9e-56 223.0 304 48.7
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 8.4e-56 221.5 311 47.9
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 1.1e-55 221.1 293 47.4
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 1.4e-55 220.7 306 48.4
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 2.5e-55 219.9 304 47.4
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 4.2e-55 219.2 294 47.3
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 7.1e-55 218.4 289 48.8
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 1.6e-54 217.2 306 48.0
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 2.1e-54 216.9 304 46.4
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 4.6e-54 215.7 309 46.3
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 1.3e-53 214.2 341 44.3
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 3.0e-53 213.0 214 57.0
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 3.0e-53 213.0 320 46.2
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 3.9e-53 212.6 329 46.5
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 1.1e-52 211.1 299 46.8
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.5e-52 210.7 317 46.4
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.9e-52 210.3 321 45.2
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 4.3e-52 209.1 309 46.9
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 1.3e-51 207.6 298 46.3
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.6e-51 207.2 300 45.3
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 2.1e-51 206.8 313 44.4
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 3.7e-51 206.1 298 46.0
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 4.8e-51 205.7 305 45.9
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 6.2e-51 205.3 309 46.3
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 6.2e-51 205.3 302 46.7
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 1.4e-50 204.1 309 46.0
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.4e-50 204.1 305 45.2
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 1.8e-50 203.8 342 43.6
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 2.4e-50 203.4 304 43.4
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 3.1e-50 203.0 299 44.5
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 5.3e-50 202.2 321 43.3
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 1.5e-49 200.7 272 47.8
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 2.6e-49 199.9 301 44.9
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 1.0e-48 198.0 325 44.3
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 1.0e-48 198.0 313 43.8
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.3e-48 197.6 328 43.3
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 1.7e-48 197.2 309 43.7
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 2.2e-48 196.8 297 43.8
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 8.4e-48 194.9 308 44.2
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.4e-47 194.1 307 41.0
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 1.4e-47 194.1 302 44.4
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 1.9e-47 193.7 300 43.7
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 1.9e-47 193.7 325 43.7
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 2.5e-47 193.4 306 43.8
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 3.2e-47 193.0 218 52.3
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 4.2e-47 192.6 315 44.8
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 5.5e-47 192.2 305 44.9
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 7.1e-47 191.8 297 44.8
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 1.2e-46 191.0 308 44.5
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 1.2e-46 191.0 302 42.7
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 2.1e-46 190.3 312 41.3
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 3.5e-46 189.5 315 44.8
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 4.6e-46 189.1 303 42.9
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 6.0e-46 188.7 303 43.9
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 6.0e-46 188.7 313 43.1
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 7.9e-46 188.3 294 44.6
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 7.9e-46 188.3 304 42.1
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 1.3e-45 187.6 300 43.3
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 2.3e-45 186.8 294 44.2
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 2.3e-45 186.8 295 41.4
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.9e-45 186.0 225 50.7
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 8.7e-45 184.9 361 38.8
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.1e-44 184.5 303 43.2
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 1.5e-44 184.1 216 49.5
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 1.5e-44 184.1 304 44.4
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 3.3e-44 183.0 306 40.8
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 3.3e-44 183.0 311 40.8
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 5.7e-44 182.2 313 42.5
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 5.7e-44 182.2 313 42.5
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 5.7e-44 182.2 313 42.5
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 7.4e-44 181.8 293 43.0
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 7.4e-44 181.8 293 43.0
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 9.7e-44 181.4 313 40.9
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 4.8e-43 179.1 237 49.4
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 6.9e-42 175.3 295 42.7
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 1.2e-41 174.5 231 49.8
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 1.5e-41 174.1 309 42.7
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 2.6e-41 173.3 308 39.3
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 4.5e-41 172.6 313 39.0
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 1.7e-40 170.6 300 41.3
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 2.2e-40 170.2 209 48.3
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 2.9e-40 169.9 297 41.4
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 2.9e-40 169.9 297 41.4
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 5.0e-40 169.1 300 41.3
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 4.2e-39 166.0 307 37.8
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 7.2e-39 165.2 313 38.3
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 1.2e-38 164.5 305 39.0
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 1.6e-38 164.1 297 40.7
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 2.1e-38 163.7 307 40.1
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 2.7e-38 163.3 299 43.1
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 6.7e-37 158.7 313 38.3
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 2.0e-36 157.1 292 40.4
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 4.1e-34 149.4 250 40.0
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 1.3e-32 144.4 368 34.8
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 2.5e-31 140.2 310 35.8
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 3.2e-31 139.8 164 53.0
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 5.5e-31 139.0 281 38.8
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 2.7e-30 136.7 294 38.8
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.0e-28 130.6 311 34.4
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.7e-27 127.5 148 56.8
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 9.1e-26 121.7 300 37.7
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 9.1e-26 121.7 300 37.7
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 3.5e-25 119.8 328 33.5
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 7.2e-23 112.1 265 34.3
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 8.8e-21 105.1 153 47.7
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 8.8e-21 105.1 126 52.4
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 8.2e-19 98.6 362 29.6
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 4.1e-18 96.3 59 83.1
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 5.3e-18 95.9 337 28.8
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 3.5e-17 93.2 171 40.4
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.5e-17 93.2 349 29.8
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.0e-16 91.7 372 28.0
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.0e-16 91.7 357 30.0
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.2e-16 90.5 370 28.1
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 8.5e-16 88.6 259 32.4
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 8.5e-16 88.6 361 30.2
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 1.5e-15 87.8 132 37.9
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.5e-15 87.8 90 58.9
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 1.5e-12 77.8 158 36.7
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 7.7e-09 65.5 328 25.3
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 5.0e-08 62.8 177 29.4
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 5.0e-08 62.8 179 30.2
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 1.9e-07 60.8 178 30.3
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 2.5e-07 60.5 203 31.5
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 4.2e-07 59.7 188 34.0
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 5.5e-07 59.3 55 56.4
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 9.4e-07 58.5 147 33.3
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 1.6e-06 57.8 177 32.2
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 2.1e-06 57.4 229 28.4
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 2.7e-06 57.0 189 29.6
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 3.6e-06 56.6 195 29.2
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 4.7e-06 56.2 156 30.8
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 6.1e-06 55.8 166 30.7
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 8.0e-06 55.5 92 38.0


User provided reference genes

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