Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01097 Erythranthe guttata HOM05D004314 ORTHO05D005627 4.7e-126 454.5 225 100.0
Migut.B00548 Erythranthe guttata HOM05D004314 ORTHO05D005627 1.3e-99 366.7 217 82.0
SGA_v2.0_scaffold83G26378 Striga asiatica HOM05D004314 ORTHO05D005627 3.2e-98 362.1 220 80.9
Cc02_g20900 Coffea canephora HOM05D004314 ORTHO05D005627 7.0e-98 360.9 214 81.3
Dinv24147 Davidia involucrata HOM05D004314 ORTHO05D005627 7.0e-98 360.9 219 78.1
SalBow6G1754 Salvia bowleyana HOM05D004314 ORTHO05D005627 7.8e-97 357.5 217 80.2
SalBow6G4888 Salvia bowleyana HOM05D004314 ORTHO05D005627 6.6e-96 354.4 217 79.7
MSTRG.5286 Avicennia marina HOM05D004314 ORTHO05D005627 1.9e-95 352.8 222 79.3
Lj5C229G21 Lonicera japonica HOM05D004314 ORTHO05D005627 3.3e-95 352.1 220 76.4
Nitab4.5_0000313g0120 Nicotiana tabacum HOM05D004314 ORTHO05D005627 3.3e-95 352.1 224 78.6
Duzib248G0634 Durio zibethinus HOM05D004314 ORTHO05D005627 7.3e-95 350.9 219 76.3
Gohir.A12G016600 Gossypium hirsutum HOM05D004314 ORTHO05D005627 7.3e-95 350.9 219 76.7
Lsat_1_v5_gn_5_110080 Lactuca sativa HOM05D004314 ORTHO05D005627 1.2e-94 350.1 220 76.8
Oeu014196.1 Olea europaea HOM05D004314 ORTHO05D005627 2.1e-94 349.4 221 77.8
Actinidia02394 Actinidia chinensis HOM05D004314 ORTHO05D005627 2.8e-94 349.0 221 75.6
Nitab4.5_0008998g0030 Nicotiana tabacum HOM05D004314 ORTHO05D005627 3.6e-94 348.6 224 77.2
CSS0015344 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 4.7e-94 348.2 199 79.9
ECA234G3638 Erigeron canadensis HOM05D004314 ORTHO05D005627 4.7e-94 348.2 218 77.1
CSS0039933 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 8.0e-94 347.4 199 79.9
Gorai.008G017500 Gossypium raimondii HOM05D004314 ORTHO05D005627 8.0e-94 347.4 219 77.2
Sabra07G0094400 Salix brachista HOM05D004314 ORTHO05D005627 1.8e-93 346.3 220 75.0
CAN.G1223.2 Capsicum annuum HOM05D004314 ORTHO05D005627 2.3e-93 345.9 223 75.3
HanXRQChr10g0297771 Helianthus annuus HOM05D004314 ORTHO05D005627 2.3e-93 345.9 224 75.9
vmacro01861 Vaccinium macrocarpon HOM05D004314 ORTHO05D005627 3.1e-93 345.5 206 77.7
Potri.007G115900 Populus trichocarpa HOM05D004314 ORTHO05D005627 5.2e-93 344.7 217 75.1
FAN02G2826 Fragaria x ananassa HOM05D004314 ORTHO05D005627 8.9e-93 344.0 206 78.6
Manes.07G041800 Manihot esculenta HOM05D004314 ORTHO05D005627 8.9e-93 344.0 211 77.7
DCAR_021906 Daucus carota HOM05D004314 ORTHO05D005627 1.2e-92 343.6 222 76.1
FAN15G2873 Fragaria x ananassa HOM05D004314 ORTHO05D005627 2.0e-92 342.8 206 78.2
Thecc.02G129100 Theobroma cacao HOM05D004314 ORTHO05D005627 2.0e-92 342.8 219 76.3
Cfa005737 Carpinus fangiana HOM05D004314 ORTHO05D005627 9.8e-92 340.5 223 75.3
Gohir.D12G017200 Gossypium hirsutum HOM05D004314 ORTHO05D005627 9.8e-92 340.5 219 75.8
Sc08g0003970 Simmondsia chinensis HOM05D004314 ORTHO05D005627 1.3e-91 340.1 222 74.8
CARHR278310 Cardamine hirsuta HOM05D004314 ORTHO05D005627 2.2e-91 339.3 216 75.0
RcHm_v2.0_Chr6g0270931 Rosa chinensis HOM05D004314 ORTHO05D005627 2.2e-91 339.3 212 76.4
Aa31LG1G17530 Aethionema arabicum HOM05D004314 ORTHO05D005627 3.7e-91 338.6 216 74.5
TAR381G1143 Trochodendron aralioides HOM05D004314 ORTHO05D005627 3.7e-91 338.6 222 74.8
CSS0022890 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 6.4e-91 337.8 222 73.0
FvH4_2g11570 Fragaria vesca HOM05D004314 ORTHO05D005627 1.1e-90 337.0 211 75.8
Peaxi162Scf00003g03234 Petunia axillaris HOM05D004314 ORTHO05D005627 3.2e-90 335.5 263 65.8
TWI59G0405 Tripterygium wilfordii HOM05D004314 ORTHO05D005627 3.2e-90 335.5 215 73.5
Carub.0008s2517 Capsella rubella HOM05D004314 ORTHO05D005627 4.1e-90 335.1 206 75.2
AL8G41730 Arabidopsis lyrata HOM05D004314 ORTHO05D005627 7.0e-90 334.3 216 73.1
A06p31050 Brassica napus HOM05D004314 ORTHO05D005627 7.0e-90 334.3 216 73.6
Cpa.g.sc20.4 Carica papaya HOM05D004314 ORTHO05D005627 7.0e-90 334.3 222 72.5
AT5G64370 Arabidopsis thaliana HOM05D004314 ORTHO05D005627 9.2e-90 334.0 216 72.7
CsaV3_7G006870 Cucumis sativus L. HOM05D004314 ORTHO05D005627 9.2e-90 334.0 212 74.5
BolC3t18450H Brassica oleracea HOM05D004314 ORTHO05D005627 1.2e-89 333.6 203 76.8
BraA06t26047Z Brassica rapa HOM05D004314 ORTHO05D005627 1.2e-89 333.6 216 73.1
Glyma.07G182100 Glycine max HOM05D004314 ORTHO05D005627 1.2e-89 333.6 212 74.1
MELO3C018607.2 Cucumis melo HOM05D004314 ORTHO05D005627 2.7e-89 332.4 204 75.0
BcaC01g06912 Brassica carinata HOM05D004314 ORTHO05D005627 3.5e-89 332.0 203 76.4
C03p61910 Brassica napus HOM05D004314 ORTHO05D005627 3.5e-89 332.0 203 76.4
Lj4g0019883 Lotus japonicus HOM05D004314 ORTHO05D005627 3.5e-89 332.0 217 72.8
GSVIVG01015663001 Vitis vinifera HOM05D004314 ORTHO05D005627 4.6e-89 331.6 211 74.9
Ah.01g023920 Amaranthus hybridus HOM05D004314 ORTHO05D005627 6.0e-89 331.3 219 73.1
CANSAT54G1432 Cannabis sativa HOM05D004314 ORTHO05D005627 6.0e-89 331.3 222 73.0
FAN24G0404 Fragaria x ananassa HOM05D004314 ORTHO05D005627 6.0e-89 331.3 219 73.5
Rhsim11G0142100 Rhododendron simsii HOM05D004314 ORTHO05D005627 6.0e-89 331.3 267 64.4
Sp2g27460 Schrenkiella parvula HOM05D004314 ORTHO05D005627 6.0e-89 331.3 216 73.1
CiPaw.06G157900 Carya illinoinensis HOM05D004314 ORTHO05D005627 7.8e-89 330.9 224 73.7
Thhalv10004324m.g Eutrema salsugineum HOM05D004314 ORTHO05D005627 1.0e-88 330.5 206 74.3
MBI16_g27581_MAGBIO Magnolia biondii HOM05D004314 ORTHO05D005627 1.0e-88 330.5 215 73.0
Hund00381 Selenicereus undatus HOM05D004314 ORTHO05D005627 1.0e-88 330.5 221 72.4
BcaC01g06917 Brassica carinata HOM05D004314 ORTHO05D005627 1.7e-88 329.7 215 73.0
ClCG09G016090 Citrullus lanatus HOM05D004314 ORTHO05D005627 1.7e-88 329.7 220 70.9
PSO675G0906 Papaver somniferum HOM05D004314 ORTHO05D005627 1.7e-88 329.7 223 70.0
PGSC0003DMG400029019 Solanum tuberosum HOM05D004314 ORTHO05D005627 1.7e-88 329.7 222 73.0
Solyc10g047630.2 Solanum lycopersicum HOM05D004314 ORTHO05D005627 2.3e-88 329.3 222 72.5
Sed0001289 Sechium edule HOM05D004314 ORTHO05D005627 3.9e-88 328.6 220 71.8
Atru.chr6.1274 Acer truncatum HOM05D004314 ORTHO05D005627 5.0e-88 328.2 221 71.9
VMungo0251G2073 Vigna mungo HOM05D004314 ORTHO05D005627 6.6e-88 327.8 211 74.4
Phvul.002G213100 Phaseolus vulgaris HOM05D004314 ORTHO05D005627 8.6e-88 327.4 212 74.1
QL11p025244 Quercus lobata HOM05D004314 ORTHO05D005627 8.6e-88 327.4 223 73.1
EL10Ac9g22069 Beta vulgaris HOM05D004314 ORTHO05D005627 1.1e-87 327.0 222 71.6
A09p08650 Brassica napus HOM05D004314 ORTHO05D005627 1.5e-87 326.6 203 75.4
BraA09t36514Z Brassica rapa HOM05D004314 ORTHO05D005627 2.5e-87 325.9 216 72.2
Prupe.8G070200 Prunus persica HOM05D004314 ORTHO05D005627 4.3e-87 325.1 221 71.9
Eucgr.G00868 Eucalyptus grandis HOM05D004314 ORTHO05D005627 5.6e-87 324.7 214 71.0
MD10G1054600 Malus domestica HOM05D004314 ORTHO05D005627 5.6e-87 324.7 205 74.1
TPR.G22394 Trifolium pratense HOM05D004314 ORTHO05D005627 9.5e-87 323.9 200 75.5
arahy.Tifrunner.gnm1.ann1.NRM1UC Arachis hypogaea HOM05D004314 ORTHO05D005627 1.2e-86 323.6 204 74.5
Medtr4g093570 Medicago truncatula HOM05D004314 ORTHO05D005627 1.6e-86 323.2 212 72.6
Nn5g29880 Nelumbo nucifera HOM05D004314 ORTHO05D005627 2.1e-86 322.8 266 63.5
Ca_18382_v3 Cicer arietinum L. HOM05D004314 ORTHO05D005627 2.8e-86 322.4 212 71.7
PGR142G0142 Punica granatum HOM05D004314 ORTHO05D005627 2.8e-86 322.4 220 70.5
arahy.Tifrunner.gnm1.ann1.1Z5YUN Arachis hypogaea HOM05D004314 ORTHO05D005627 3.6e-86 322.0 221 71.0
THA.LOC104818523 Tarenaya hassleriana HOM05D004314 ORTHO05D005627 3.6e-86 322.0 199 75.4
HPP92_014474 Vanilla planifolia HOM05D004314 ORTHO05D005627 3.6e-86 322.0 199 74.9
Psat7g101160 Pisum sativum HOM05D004314 ORTHO05D005627 4.7e-86 321.6 205 74.1
BcaC04g23320 Brassica carinata HOM05D004314 ORTHO05D005627 6.2e-86 321.2 211 71.6
C09p09760 Brassica napus HOM05D004314 ORTHO05D005627 6.2e-86 321.2 211 71.6
BolC9t53887H Brassica oleracea HOM05D004314 ORTHO05D005627 6.2e-86 321.2 211 71.6
Ciclev10028599m.g Citrus clementina HOM05D004314 ORTHO05D005627 6.2e-86 321.2 211 72.0
Lalb_Chr05g0217821 Lupinus albus HOM05D004314 ORTHO05D005627 6.2e-86 321.2 219 70.3
PSO541G1934 Papaver somniferum HOM05D004314 ORTHO05D005627 6.2e-86 321.2 223 69.1
AUR62027107 Chenopodium quinoa HOM05D004314 ORTHO05D005627 1.1e-85 320.5 227 70.0
unitig_744.g24190 Utricularia gibba HOM05D004314 ORTHO05D005627 1.4e-85 320.1 205 75.6
Os07g0485100 Oryza sativa ssp. japonica HOM05D004314 ORTHO05D005627 5.2e-85 318.2 209 70.8
TPR.G2844 Trifolium pratense HOM05D004314 ORTHO05D005627 6.8e-85 317.8 198 73.7
Gohir.D03G101100 Gossypium hirsutum HOM05D004314 ORTHO05D005627 5.8e-84 314.7 219 71.2
CDE02G1136 Ceratophyllum demersum HOM05D004314 ORTHO05D005627 2.9e-83 312.4 211 71.1
Medtr4g093580 Medicago truncatula HOM05D004314 ORTHO05D005627 3.7e-83 312.0 199 73.4
Haze_10517 Corylus avellana HOM05D004314 ORTHO05D005627 9.2e-82 307.4 210 71.4
Gorai.003G106500 Gossypium raimondii HOM05D004314 ORTHO05D005627 1.2e-81 307.0 219 70.3
Zm00001eb321550 Zea mays HOM05D004314 ORTHO05D005627 1.6e-81 306.6 207 70.0
BcaNung06256 Brassica carinata HOM05D004314 ORTHO05D005627 7.8e-81 304.3 216 69.4
Hma1.2p1_1093F.1_g256240 Hydrangea macrophylla HOM05D004314 ORTHO05D005627 2.3e-80 302.8 178 80.3
CiPaw.05G029300 Carya illinoinensis HOM05D004314 ORTHO05D005627 3.0e-80 302.4 221 66.5
Gorai.002G038200 Gossypium raimondii HOM05D004314 ORTHO05D005627 1.5e-79 300.1 219 70.3
Gohir.D07G103100 Gossypium hirsutum HOM05D004314 ORTHO05D005627 5.2e-77 291.6 175 81.1
ATR0767G162 Amborella trichopoda HOM05D004314 ORTHO05D005627 7.6e-76 287.7 222 62.2
SEGI_34858 Sequoiadendron giganteum HOM05D004314 ORTHO05D005627 1.4e-74 283.5 213 64.3
TPR.G2856 Trifolium pratense HOM05D004314 ORTHO05D005627 1.6e-73 280.0 198 66.2
Gohir.D01G028700 Gossypium hirsutum HOM05D004314 ORTHO05D005627 6.6e-72 274.6 245 60.8
Mapoly0006s0006 Marchantia polymorpha HOM05D004314 ORTHO05D005627 2.8e-70 269.2 200 62.5
Eucgr.G00862 Eucalyptus grandis HOM05D004314 ORTHO05D005627 8.1e-70 267.7 169 72.2
Pp3c3_36650 Physcomitrium patens HOM05D004314 ORTHO05D005627 1.2e-65 253.8 207 58.9
AagrBONN_evm.TU.Sc2ySwM_344.1110 Anthoceros agrestis HOM05D004314 ORTHO05D005627 3.9e-64 248.8 194 55.7
AUR62012883 Chenopodium quinoa HOM05D004314 ORTHO05D005627 1.5e-63 246.9 227 59.0
HanXRQChr04g0116191 Helianthus annuus HOM05D004314 ORTHO05D005627 4.0e-61 238.8 175 70.3
COL.COLO4_32391 Corchorus olitorius HOM05D004314 ORTHO05D005627 6.9e-61 238.0 176 68.2
Gorai.007G289000 Gossypium raimondii HOM05D004314 ORTHO05D005627 8.4e-59 231.1 174 67.8
SMO356G0581 Selaginella moellendorffii HOM05D004314 ORTHO05D005627 4.6e-57 225.3 172 62.8
CBR_g26363 Chara braunii HOM05D004314 ORTHO05D005627 1.0e-56 224.2 208 51.0
Haze_10516 Corylus avellana HOM05D004314 ORTHO05D005627 3.3e-55 219.2 202 58.4
PRCOL_00005583 Prasinoderma coloniale HOM05D004314 ORTHO05D005627 3.6e-54 215.7 201 48.8
Cre01.g022650 Chlamydomonas reinhardtii HOM05D004314 ORTHO05D005627 3.4e-52 209.1 200 49.0
Gohir.D11G269150 Gossypium hirsutum HOM05D004314 ORTHO05D005627 6.7e-48 194.9 131 74.0
Haze_27162 Corylus avellana HOM05D004314 ORTHO05D005627 3.4e-44 182.6 194 46.9
Sopen10g018040 Solanum pennellii HOM05D004314 ORTHO05D005627 1.4e-42 177.2 92 87.0
CAN.G1223.1 Capsicum annuum HOM05D004314 ORTHO05D005627 4.3e-39 165.6 92 81.5
Gohir.D06G146450 Gossypium hirsutum HOM05D004314 ORTHO05D047323 5.0e-35 152.1 78 87.2
BcaB04g19968 Brassica carinata HOM05D004314 ORTHO05D000740 2.7e-33 146.4 72 86.1
vmacro01862 Vaccinium macrocarpon HOM05D004314 ORTHO05D005627 2.7e-33 146.4 141 51.8
CSS0001562 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 1.8e-32 143.7 72 86.1
Gorai.006G064500 Gossypium raimondii HOM05D004314 ORTHO05D025709 1.8e-32 143.7 73 87.7
Aqoxy6G00870 Aquilegia oxysepala HOM05D004314 ORTHO05D005627 3.9e-32 142.5 100 68.0
Gorai.013G168600 Gossypium raimondii HOM05D004314 ORTHO05D025709 5.1e-32 142.1 73 86.3
Gorai.011G144100 Gossypium raimondii HOM05D004314 ORTHO05D025709 1.5e-31 140.6 73 84.9
Gorai.011G177000 Gossypium raimondii HOM05D004314 ORTHO05D047323 4.3e-31 139.0 72 84.7
MCO09G090 Micromonas commoda HOM05D004314 ORTHO05D005627 4.8e-30 135.6 94 66.0
Gohir.D10G130350 Gossypium hirsutum HOM05D004314 ORTHO05D025709 2.6e-28 129.8 67 85.1
Gohir.D09G023125 Gossypium hirsutum HOM05D004314 ORTHO05D025709 1.7e-27 127.1 67 85.1
CDE01G0635 Ceratophyllum demersum HOM05D004314 ORTHO05D005627 1.2e-25 120.9 62 87.1
Actinidia00307 Actinidia chinensis HOM05D004314 ORTHO05D018179 1.1e-21 107.8 87 60.9
HanXRQChr06g0177281 Helianthus annuus HOM05D004314 ORTHO05D005627 4.1e-21 105.9 65 81.5
Eucgr.G00867 Eucalyptus grandis HOM05D004314 ORTHO05D005627 6.5e-19 98.6 93 51.6
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 3.2e-18 96.3 80 60.0
Medtr6g034725 Medicago truncatula HOM05D004314 ORTHO05D005627 2.1e-09 67.0 37 75.7
HanXRQChr16g0514541 Helianthus annuus HOM05D004314 ORTHO05D227341 2.7e-09 66.6 87 47.1
Gohir.A06G172504 Gossypium hirsutum HOM05D004314 ORTHO05D005627 4.4e-07 59.3 32 84.4
Gohir.A06G191701 Gossypium hirsutum HOM05D004314 ORTHO05D005627 4.4e-07 59.3 32 84.4
Gohir.A07G137450 Gossypium hirsutum HOM05D004314 ORTHO05D005627 4.4e-07 59.3 32 84.4
Gohir.D01G110733 Gossypium hirsutum HOM05D004314 ORTHO05D005627 4.4e-07 59.3 32 84.4
Gohir.D01G130550 Gossypium hirsutum HOM05D004314 ORTHO05D005627 4.4e-07 59.3 32 84.4
Gohir.D02G092980 Gossypium hirsutum HOM05D004314 ORTHO05D005627 4.4e-07 59.3 32 84.4
Gohir.D13G120332 Gossypium hirsutum HOM05D004314 ORTHO05D005627 4.4e-07 59.3 32 84.4
Gohir.D09G045950 Gossypium hirsutum HOM05D004314 ORTHO05D005627 2.2e-06 57.0 32 78.1
A10p25730 Brassica napus HOM05D001787 ORTHO05D003488 4.8e-06 55.8 127 30.7


User provided reference genes

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