Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 1.3e-241 839.3 418 100.0
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.5e-194 682.9 420 79.5
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 2.2e-190 669.1 420 78.1
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 2.4e-184 649.0 420 77.4
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.1e-181 640.2 408 77.2
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 4.8e-177 624.8 420 72.9
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 8.3e-177 624.0 420 73.1
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.2e-175 620.2 420 73.1
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 4.7e-172 608.2 420 71.4
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 4.7e-172 608.2 420 71.0
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 3.0e-171 605.5 420 71.2
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 7.5e-170 600.9 420 69.8
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 2.8e-169 599.0 420 70.2
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 2.0e-167 592.8 420 68.6
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 1.3e-166 590.1 420 70.0
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 6.6e-166 587.8 417 68.6
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 6.6e-166 587.8 420 69.0
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 8.6e-166 587.4 420 69.0
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 8.6e-166 587.4 420 69.0
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 1.1e-165 587.0 421 68.6
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.5e-165 586.6 420 70.2
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 7.3e-165 584.3 420 68.8
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 9.5e-165 583.9 420 67.9
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 6.1e-164 581.3 420 66.7
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 8.0e-164 580.9 420 66.4
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 1.0e-163 580.5 420 68.3
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 1.0e-163 580.5 420 69.0
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 2.3e-163 579.3 420 69.0
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 4.0e-163 578.6 420 67.4
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 5.2e-163 578.2 420 67.1
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.2e-162 577.0 420 67.1
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.5e-162 576.6 420 66.7
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 3.4e-162 575.5 420 68.3
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 5.7e-162 574.7 420 67.1
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.3e-161 573.5 420 67.1
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 1.3e-161 573.5 420 68.1
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 1.7e-161 573.2 420 68.8
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.7e-161 572.0 420 68.3
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.9e-161 571.6 420 68.1
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.9e-161 571.6 420 68.1
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 8.3e-161 570.9 420 68.1
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 1.4e-160 570.1 420 67.9
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 1.4e-160 570.1 420 66.4
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 2.4e-160 569.3 421 66.7
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 2.4e-160 569.3 420 66.9
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 3.2e-160 568.9 420 67.1
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 4.1e-160 568.5 420 66.9
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 5.4e-160 568.2 420 67.6
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 9.2e-160 567.4 420 67.6
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 9.2e-160 567.4 425 66.8
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 9.2e-160 567.4 420 68.3
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 9.2e-160 567.4 423 67.1
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 2.7e-159 565.8 420 67.4
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.3e-158 563.5 420 66.7
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.3e-158 563.5 425 66.1
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.7e-158 563.1 420 65.5
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 6.6e-158 561.2 421 67.0
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.9e-157 559.7 420 66.2
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 3.3e-157 558.9 420 65.5
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 4.3e-157 558.5 420 64.3
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 4.3e-157 558.5 420 63.6
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 5.6e-157 558.1 419 65.9
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 7.3e-157 557.8 420 63.6
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 1.6e-156 556.6 421 65.8
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 2.8e-156 555.8 421 67.2
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 3.6e-156 555.4 420 65.0
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 4.7e-156 555.1 420 64.5
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 6.2e-156 554.7 425 65.4
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 6.2e-156 554.7 421 65.8
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 8.0e-156 554.3 419 64.0
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.0e-155 553.9 417 65.7
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.8e-155 553.1 421 64.8
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 2.3e-155 552.7 420 65.0
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.3e-155 552.7 420 66.4
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 2.3e-155 552.7 420 62.4
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 3.1e-155 552.4 420 64.0
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.0e-155 552.0 420 66.4
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.2e-154 550.4 405 67.2
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 4.4e-154 548.5 420 63.6
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.4e-154 548.5 420 66.0
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 2.2e-153 546.2 420 64.0
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.7e-153 545.4 420 63.6
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 7.0e-152 541.2 421 66.5
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 6.0e-151 538.1 422 65.4
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 6.0e-151 538.1 424 63.9
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 6.0e-151 538.1 420 61.7
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 7.8e-151 537.7 425 62.4
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.7e-150 536.6 421 61.5
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 3.0e-150 535.8 421 65.8
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 3.1e-147 525.8 422 61.4
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 5.2e-147 525.0 421 62.9
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 2.6e-146 522.7 420 61.7
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 2.9e-145 519.2 420 62.6
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 3.7e-145 518.8 420 61.0
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 4.9e-145 518.5 420 61.7
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 6.4e-145 518.1 420 62.1
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.1e-144 515.4 421 61.5
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 2.7e-143 512.7 420 61.2
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 2.7e-143 512.7 420 61.7
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 6.0e-143 511.5 377 66.0
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 2.3e-142 509.6 420 59.3
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 5.1e-142 508.4 420 60.5
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 9.5e-141 504.2 420 59.8
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 2.8e-140 502.7 420 59.5
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 4.7e-140 501.9 420 59.3
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 4.7e-140 501.9 420 59.5
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 5.2e-139 498.4 420 59.0
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.2e-138 497.3 420 60.2
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 6.4e-137 491.5 420 57.4
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 2.3e-134 483.0 420 57.6
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 1.1e-133 480.7 421 56.5
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 1.1e-131 474.2 354 68.9
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 1.4e-128 463.8 426 55.4
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.3e-124 450.7 421 54.6
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 4.3e-117 425.6 407 54.5
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 1.1e-112 411.0 425 51.8
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 5.1e-110 402.1 425 51.5
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 4.8e-108 395.6 365 56.7
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 2.2e-105 386.7 403 47.6
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 4.9e-105 385.6 251 75.7
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.0e-102 377.9 420 50.2
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 3.3e-93 346.3 302 59.9
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.1e-91 341.3 282 62.1
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 9.4e-88 328.2 423 43.5
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 7.9e-87 325.1 374 45.2
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 9.7e-77 291.6 298 50.3
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 7.0e-75 285.4 248 57.3
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 4.7e-63 246.1 303 44.6
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.6e-53 213.8 264 46.2
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 3.5e-50 203.4 128 75.8
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 4.0e-46 189.9 131 68.7
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 7.8e-42 175.6 161 56.5
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-30 138.7 98 67.3
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.2e-29 135.2 102 66.7
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 1.7e-28 131.3 90 68.9
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-23 115.2 70 72.9
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.7e-23 113.2 73 69.9
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 4.0e-22 110.2 70 71.4
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 5.8e-21 106.3 70 70.0
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.8e-21 106.3 70 70.0
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 4.9e-20 103.2 79 65.8
Ca_19405_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 1.3e-09 68.6 358 23.7
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 2.3e-09 67.8 238 29.0
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 2.3e-09 67.8 238 29.0
CBR_g46671 Chara braunii HOM05D014545 ORTHO05D020397 5.1e-09 66.6 336 22.9
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.5e-08 65.1 238 28.6
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 4.3e-08 63.5 218 27.5
RcHm_v2.0_Chr2g0160731 Rosa chinensis HOM05D008065 ORTHO05D010197 1.6e-07 61.6 348 26.1
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 4.8e-07 60.1 240 29.6
EL10Ac8g18346 Beta vulgaris HOM05D000312 ORTHO05D000221 1.1e-06 58.9 319 22.6
Peaxi162Scf01385g00035 Petunia axillaris HOM05D001396 ORTHO05D000493 1.4e-06 58.5 263 26.6
Lj3g0011633 Lotus japonicus HOM05D003488 ORTHO05D004214 1.8e-06 58.2 358 22.6
Actinidia37828 Actinidia chinensis HOM05D000312 ORTHO05D000493 2.4e-06 57.8 197 26.4
Nitab4.5_0000027g0360 Nicotiana tabacum HOM05D000312 ORTHO05D000221 4.0e-06 57.0 146 28.1
Peaxi162Scf00263g01018 Petunia axillaris HOM05D004895 ORTHO05D003385 4.0e-06 57.0 237 25.7
PGSC0003DMG400037653 Solanum tuberosum HOM05D001396 ORTHO05D000493 6.9e-06 56.2 253 26.1
Peaxi162Scf00179g00923 Petunia axillaris HOM05D000312 ORTHO05D000221 9.0e-06 55.8 103 33.0


User provided reference genes

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