Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 4.3e-159 564.7 302 100.0
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.3e-123 446.8 302 79.8
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 1.0e-107 394.0 298 73.8
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 4.0e-104 382.1 308 67.5
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 6.3e-102 374.8 304 67.4
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 2.4e-101 372.9 308 66.9
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 4.1e-101 372.1 318 66.4
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 9.1e-101 370.9 302 68.9
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.2e-100 370.5 318 66.4
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.6e-100 370.2 305 68.2
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 2.0e-100 369.8 302 67.9
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 2.6e-100 369.4 309 66.7
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.6e-100 369.4 303 67.3
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 4.5e-100 368.6 311 66.6
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 2.9e-99 365.9 304 66.8
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 4.2e-98 362.1 306 66.0
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 9.4e-98 360.9 306 66.0
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.8e-96 356.7 304 66.4
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 4.0e-96 355.5 301 66.4
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 6.8e-96 354.8 309 64.7
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.5e-95 353.6 303 65.7
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 2.6e-95 352.8 308 65.6
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 2.6e-95 352.8 305 65.9
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 9.8e-95 350.9 307 66.1
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 9.8e-95 350.9 304 66.4
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 9.8e-95 350.9 313 64.2
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 1.7e-94 350.1 309 65.7
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 2.2e-94 349.7 304 64.8
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.8e-94 349.4 272 69.9
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 3.7e-94 349.0 310 64.2
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 6.3e-94 348.2 308 64.3
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 5.4e-93 345.1 303 64.4
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 7.0e-93 344.7 304 64.5
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 7.0e-93 344.7 277 70.8
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 4.5e-92 342.0 282 69.1
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 1.0e-91 340.9 301 63.1
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.0e-91 340.9 306 62.4
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.7e-91 340.1 306 62.1
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 2.9e-91 339.3 308 64.0
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.9e-91 339.3 304 62.2
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 2.5e-90 336.3 320 62.5
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 3.2e-90 335.9 308 64.0
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 2.1e-89 333.2 305 59.0
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 2.1e-89 333.2 299 65.2
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 3.6e-89 332.4 304 64.1
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 4.7e-89 332.0 342 58.5
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 8.0e-89 331.3 281 68.0
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.4e-88 330.5 309 62.1
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 1.8e-88 330.1 299 62.9
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 3.0e-88 329.3 304 65.8
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.2e-87 327.4 301 62.5
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 2.8e-86 322.8 305 62.3
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 9.1e-85 317.8 313 60.7
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.2e-84 317.4 308 59.7
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 3.8e-83 312.4 304 60.9
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 3.8e-83 312.4 305 60.3
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.5e-82 310.5 200 81.5
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 1.9e-82 310.1 320 58.8
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 4.2e-82 308.9 253 68.0
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.2e-81 307.4 290 62.8
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 2.1e-81 306.6 291 58.4
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 4.7e-81 305.4 309 59.2
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.0e-80 304.3 309 58.9
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 5.2e-80 302.0 291 61.5
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 8.9e-80 301.2 222 73.0
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 1.5e-79 300.4 289 61.6
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 5.7e-79 298.5 318 58.5
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 8.3e-78 294.7 289 57.1
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 7.0e-77 291.6 297 57.6
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 2.0e-76 290.0 307 58.0
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 2.7e-76 289.7 312 57.4
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.3e-75 286.6 289 57.1
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.3e-75 286.6 289 57.1
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 1.2e-73 280.8 302 56.3
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.6e-73 280.4 288 59.7
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 3.1e-72 276.2 298 57.4
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.1e-69 267.7 342 51.5
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.4e-69 267.3 306 53.3
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 1.9e-69 266.9 289 55.4
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 1.9e-69 266.9 289 55.4
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 1.9e-69 266.9 289 55.4
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 3.2e-69 266.2 303 54.5
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.2e-68 264.2 302 54.3
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.2e-68 264.2 307 52.8
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 2.7e-68 263.1 300 52.3
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 3.3e-66 256.1 300 52.0
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 4.3e-66 255.8 308 51.9
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 7.3e-66 255.0 303 52.5
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 3.6e-65 252.7 334 48.8
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.4e-64 250.8 275 55.3
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 2.3e-64 250.0 312 50.0
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 4.0e-64 249.2 314 49.7
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 8.9e-64 248.1 292 53.4
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 3.4e-63 246.1 312 52.2
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 9.8e-63 244.6 303 52.8
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 2.2e-62 243.4 276 53.6
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.4e-62 241.9 189 64.0
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 8.3e-62 241.5 289 53.3
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.3e-59 234.2 308 48.7
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.7e-59 233.8 309 49.2
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 1.7e-59 233.8 306 49.7
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 1.7e-59 233.8 306 49.7
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 3.3e-58 229.6 306 49.7
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 2.1e-57 226.9 349 45.3
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 2.8e-57 226.5 308 49.7
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.7e-54 217.2 306 46.7
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 4.6e-52 209.1 148 68.9
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 5.1e-51 205.7 261 50.6
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.5e-50 203.4 189 58.7
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 1.4e-48 197.6 308 46.1
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.2e-46 190.3 299 43.8
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 3.8e-46 189.5 111 96.4
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 8.7e-43 178.3 137 67.9
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 1.1e-42 177.9 230 47.8
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.4e-40 170.2 112 73.2
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.3e-38 164.5 158 57.0
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.2e-36 157.9 189 49.7
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.2e-31 141.4 165 55.2
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 5.8e-31 139.0 168 50.0
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 4.6e-28 129.4 103 63.1
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.0e-27 128.3 134 59.0
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 1.4e-24 117.9 133 59.4
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 4.5e-23 112.8 66 81.8
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 7.6e-23 112.1 98 63.3
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 1.4e-21 107.8 97 61.9
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 1.4e-21 107.8 97 61.9
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 2.7e-20 103.6 100 60.0
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 2.9e-14 83.6 64 67.2
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.9e-13 80.9 48 72.9
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 2.5e-13 80.5 57 73.7
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 9.0e-08 62.0 101 39.6
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.0e-07 60.8 105 38.1
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 4.5e-07 59.7 68 44.1
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 5.9e-07 59.3 68 42.6
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 7.7e-07 58.9 68 41.2
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 1.3e-06 58.2 66 42.4
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 1.3e-06 58.2 76 44.7
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.2e-06 57.4 124 32.3
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 2.2e-06 57.4 68 41.2
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 2.9e-06 57.0 71 39.4
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.9e-06 57.0 91 46.2
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.9e-06 57.0 72 43.1
Phvul.003G273500 Phaseolus vulgaris HOM05D005384 ORTHO05D006477 2.9e-06 57.0 68 39.7
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 2.9e-06 57.0 71 39.4
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 2.9e-06 57.0 68 41.2
Glyma.16G102300 Glycine max HOM05D005384 ORTHO05D006477 3.8e-06 56.6 68 41.2
VMungo0251G2756 Vigna mungo HOM05D005384 ORTHO05D006477 3.8e-06 56.6 68 39.7
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 5.0e-06 56.2 29 79.3
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 5.0e-06 56.2 64 42.2
Zm00001eb306360 Zea mays HOM05D005384 ORTHO05D006477 5.0e-06 56.2 59 49.2
Aqoxy2G03702_Aqoxy2G03703 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 6.5e-06 55.8 63 44.4
Aqoxy3G02532 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 6.5e-06 55.8 63 44.4
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 6.5e-06 55.8 107 34.6
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 6.5e-06 55.8 68 41.2
SEGI_21581 Sequoiadendron giganteum HOM05D005384 ORTHO05D006477 6.5e-06 55.8 66 43.9
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 6.5e-06 55.8 64 42.2
EL10Ac8g19736 Beta vulgaris HOM05D005384 ORTHO05D006477 8.5e-06 55.5 71 40.8
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 8.5e-06 55.5 116 32.8
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 8.5e-06 55.5 150 29.3
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 8.5e-06 55.5 60 45.0
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 8.5e-06 55.5 64 40.6
SEGI_21811 Sequoiadendron giganteum HOM05D008111 ORTHO05D002142 8.5e-06 55.5 54 46.3


User provided reference genes

Program Settings