Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 9.7e-95 350.1 177 100.0
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 2.9e-83 312.0 177 87.0
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.6e-81 306.2 178 86.0
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 3.0e-80 302.0 176 85.2
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 1.2e-79 300.1 177 83.1
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.4e-79 298.1 177 83.6
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.7e-78 296.2 176 83.5
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 2.2e-78 295.8 176 83.0
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 2.2e-78 295.8 176 83.0
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 2.8e-78 295.4 177 82.5
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 8.3e-78 293.9 180 81.1
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.4e-77 293.1 169 84.6
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.4e-77 293.1 177 83.1
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.4e-77 293.1 179 80.4
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.4e-77 293.1 177 81.4
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 4.1e-77 291.6 169 85.2
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 7.0e-77 290.8 177 79.7
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 2.0e-76 289.3 177 79.7
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 2.7e-76 288.9 165 85.5
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 2.7e-76 288.9 174 81.6
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.7e-76 288.9 169 84.6
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 5.9e-76 287.7 180 77.8
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 7.8e-76 287.3 174 81.0
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 7.8e-76 287.3 177 80.2
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.0e-75 287.0 180 77.8
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 1.0e-75 287.0 178 79.2
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.3e-75 286.6 169 83.4
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 1.3e-75 286.6 177 79.7
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 1.3e-75 286.6 180 78.9
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 1.3e-75 286.6 180 78.9
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.7e-75 286.2 177 79.7
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 2.3e-75 285.8 180 77.8
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 3.9e-75 285.0 166 84.9
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 6.6e-75 284.3 179 78.8
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 8.6e-75 283.9 179 78.8
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 8.6e-75 283.9 179 78.8
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 8.6e-75 283.9 180 76.7
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 1.5e-74 283.1 177 79.1
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.9e-74 282.7 177 79.1
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 1.9e-74 282.7 180 78.3
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 2.5e-74 282.3 182 75.8
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 4.3e-74 281.6 184 76.1
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 7.3e-74 280.8 177 78.0
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 7.3e-74 280.8 169 82.8
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 9.5e-74 280.4 179 77.1
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 9.5e-74 280.4 200 72.5
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.5e-74 280.4 177 78.5
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.5e-74 280.4 177 78.5
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.2e-73 280.0 177 78.0
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.2e-73 280.0 179 77.7
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.8e-73 278.9 180 77.8
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 8.0e-73 277.3 179 76.5
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 1.8e-72 276.2 176 77.8
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 3.1e-72 275.4 175 78.3
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 5.2e-72 274.6 159 83.6
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 6.8e-72 274.2 185 74.6
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 6.8e-72 274.2 161 82.0
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.5e-71 273.1 175 77.7
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 2.0e-71 272.7 161 81.4
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 3.4e-71 271.9 184 75.5
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 4.4e-71 271.6 161 80.7
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 5.8e-71 271.2 177 74.6
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.8e-71 271.2 159 83.0
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 1.3e-70 270.0 160 82.5
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.3e-70 270.0 177 74.6
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 1.7e-70 269.6 189 72.0
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.7e-70 269.6 159 82.4
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.7e-70 269.6 177 74.6
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 2.2e-70 269.2 160 82.5
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 2.9e-70 268.9 173 76.3
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 3.7e-70 268.5 180 75.0
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 4.9e-70 268.1 176 74.4
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 6.4e-70 267.7 169 78.7
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.4e-69 266.5 156 84.0
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.4e-69 266.5 176 73.3
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-69 266.5 175 74.9
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 1.9e-69 266.2 158 80.4
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.4e-69 265.8 159 82.4
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 3.2e-69 265.4 169 78.1
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 5.4e-69 264.6 169 77.5
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 5.4e-69 264.6 175 74.9
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 7.0e-69 264.2 159 81.1
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 7.0e-69 264.2 159 81.1
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 7.0e-69 264.2 174 74.7
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 9.2e-69 263.8 176 73.9
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.2e-68 263.5 179 74.3
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 3.5e-68 261.9 158 79.7
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 6.0e-68 261.2 164 78.0
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 7.8e-68 260.8 160 78.8
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 1.3e-67 260.0 159 78.0
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 2.3e-67 259.2 180 71.7
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.9e-67 258.5 145 86.9
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 3.9e-67 258.5 145 86.9
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.1e-66 256.9 159 78.0
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.5e-66 256.5 180 72.2
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.5e-66 256.5 162 75.9
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.9e-66 256.1 172 72.7
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.9e-66 256.1 176 71.6
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 5.6e-66 254.6 175 71.4
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.2e-65 253.4 166 74.7
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 2.1e-65 252.7 176 70.5
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 3.6e-65 251.9 171 74.3
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 6.8e-64 247.7 145 81.4
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 8.9e-64 247.3 146 82.2
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 4.4e-63 245.0 184 67.4
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.5e-63 244.2 142 83.1
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.3e-62 243.4 137 87.6
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 4.9e-62 241.5 148 80.4
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 8.3e-62 240.7 159 75.5
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.1e-61 240.4 140 82.1
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 3.5e-60 235.3 172 68.6
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.0e-59 233.8 137 84.7
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.0e-59 233.8 158 72.2
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.0e-59 232.3 177 69.5
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.6e-57 226.5 173 68.2
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.1e-57 226.1 161 70.2
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 2.4e-53 212.6 135 80.7
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 1.3e-51 206.8 164 59.8
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.1e-50 203.8 162 64.2
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.1e-50 203.8 155 68.4
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 2.1e-49 199.5 179 54.2
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.2e-47 193.7 111 85.6
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 6.4e-46 188.0 117 81.2
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 3.2e-45 185.7 110 80.0
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 2.1e-44 183.0 117 76.1
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 2.3e-43 179.5 143 65.0
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 1.8e-40 169.9 113 76.1
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.4e-40 169.5 126 67.5
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 2.9e-38 162.5 150 52.7
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.7e-35 153.3 113 65.5
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 6.6e-35 151.4 100 74.0
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.9e-34 149.8 77 89.6
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 3.6e-33 145.6 185 48.6
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.1e-32 144.1 118 64.4
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.4e-32 143.7 127 60.6
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 9.0e-32 141.0 127 59.1
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.8e-30 135.6 77 80.5
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 6.4e-30 134.8 93 71.0
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.2e-29 132.5 77 81.8
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.2e-29 132.1 68 88.2
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 3.5e-28 129.0 82 75.6
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.7e-25 119.0 152 44.7
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 2.2e-22 109.8 117 56.4
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 3.2e-21 105.9 66 80.3
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.0e-20 101.7 77 66.2
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 4.3e-18 95.5 66 71.2
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 7.4e-18 94.7 52 84.6
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 5.3e-16 88.6 58 75.9
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 1.3e-14 84.0 58 67.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 5.9e-07 58.5 33 84.8


User provided reference genes

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