Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.7e-231 805.8 450 100.0
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 6.4e-167 591.3 450 75.3
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 6.2e-154 548.1 450 70.9
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 3.0e-148 529.3 454 67.4
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 5.1e-148 528.5 453 69.3
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 3.8e-143 512.3 451 66.7
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 3.8e-143 512.3 451 66.7
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 8.4e-143 511.1 472 64.8
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 3.5e-141 505.8 452 66.2
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 1.3e-140 503.8 453 64.5
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 5.1e-140 501.9 452 66.4
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 6.7e-140 501.5 453 66.7
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 2.5e-139 499.6 452 67.3
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 3.3e-139 499.2 450 65.6
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 5.6e-139 498.4 455 65.3
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 7.4e-139 498.0 455 65.9
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 9.6e-139 497.7 450 64.9
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 9.6e-139 497.7 450 65.3
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.3e-138 497.3 452 65.3
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.6e-138 496.9 450 65.6
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 3.7e-138 495.7 448 65.6
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 3.7e-138 495.7 453 65.3
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.1e-138 494.6 450 64.7
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 1.1e-137 494.2 453 65.8
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 1.2e-136 490.7 448 65.6
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.5e-136 490.3 450 64.0
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 3.4e-136 489.2 448 65.2
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 5.8e-136 488.4 441 67.1
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 7.6e-136 488.0 450 63.6
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-135 486.9 450 64.2
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 3.2e-134 482.6 450 63.6
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 5.5e-134 481.9 447 64.4
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 3.5e-133 479.2 439 65.8
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 3.9e-132 475.7 453 63.4
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 2.5e-131 473.0 458 63.1
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 3.3e-131 472.6 455 61.3
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 3.3e-131 472.6 427 65.8
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 2.8e-130 469.5 445 62.7
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 3.7e-130 469.2 453 62.3
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 8.2e-130 468.0 459 61.9
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 1.8e-129 466.8 450 62.2
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 9.0e-129 464.5 450 61.6
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 9.0e-129 464.5 451 60.3
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 2.6e-128 463.0 459 60.1
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 1.7e-127 460.3 450 60.9
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 1.7e-127 460.3 452 60.4
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 2.2e-127 459.9 448 61.8
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 3.8e-127 459.1 457 60.6
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 6.5e-127 458.4 450 60.2
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 8.4e-127 458.0 446 61.2
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 1.4e-126 457.2 449 60.6
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 5.5e-126 455.3 425 65.2
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 7.1e-126 454.9 448 60.7
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.6e-125 453.8 447 60.2
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.6e-125 453.8 450 59.8
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.0e-124 451.1 457 61.1
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.8e-124 450.3 450 61.6
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 3.0e-124 449.5 453 61.8
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 3.9e-124 449.1 450 59.6
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 4.3e-123 445.7 456 59.9
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 9.7e-123 444.5 452 61.5
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 1.3e-122 444.1 468 57.1
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 2.8e-122 443.0 448 59.8
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 1.1e-121 441.0 455 59.6
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 3.1e-121 439.5 448 59.6
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 3.1e-121 439.5 452 59.3
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 6.9e-121 438.3 451 58.5
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 9.0e-121 438.0 447 59.5
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.2e-120 437.6 451 59.0
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 3.4e-120 436.0 450 59.8
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 5.9e-120 435.3 446 59.6
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 1.7e-119 433.7 463 59.2
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 1.7e-119 433.7 450 59.1
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 6.5e-119 431.8 448 58.9
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 8.5e-119 431.4 463 57.7
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 5.5e-118 428.7 450 59.3
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 2.7e-117 426.4 405 60.7
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 3.6e-117 426.0 448 58.0
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 3.6e-117 426.0 448 58.5
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 4.6e-117 425.6 450 59.3
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.3e-116 423.3 439 59.7
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.3e-116 423.3 439 59.7
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.1e-115 421.0 452 57.1
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.8e-114 416.4 448 56.9
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 1.8e-113 413.7 452 56.6
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 2.4e-113 413.3 460 57.0
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 5.9e-112 408.7 454 58.1
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 8.5e-111 404.8 487 54.2
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 5.5e-110 402.1 454 56.8
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.5e-110 402.1 391 61.6
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.0e-108 397.9 469 55.9
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.0e-108 397.9 449 56.1
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 2.0e-107 393.7 448 54.9
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 6.5e-103 378.6 448 54.9
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.1e-102 377.9 448 55.1
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 4.2e-102 375.9 425 55.5
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.0e-100 371.3 337 64.1
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 2.6e-99 366.7 466 49.1
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 5.5e-94 349.0 365 60.0
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 2.1e-93 347.1 462 47.6
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 6.1e-93 345.5 371 56.1
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.0e-92 342.8 439 50.6
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 5.9e-88 328.9 324 61.4
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.2e-87 327.0 431 50.6
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 3.2e-86 323.2 389 51.2
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.7e-85 319.3 400 51.0
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 8.8e-84 315.1 422 47.9
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 7.2e-78 295.4 455 45.1
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 2.0e-75 287.3 374 48.4
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 5.0e-71 272.7 279 59.1
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 9.8e-67 258.5 225 67.1
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 9.2e-65 251.9 271 56.5
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 4.4e-59 233.0 250 56.8
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.4e-57 227.3 204 66.2
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 4.6e-56 223.0 335 47.2
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 2.8e-53 213.8 264 54.2
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 4.7e-53 213.0 368 45.7
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 2.9e-50 203.8 250 54.8
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 2.7e-48 197.2 194 57.7
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 1.6e-45 188.0 375 36.5
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 4.7e-45 186.4 359 38.7
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.2e-45 186.0 320 44.4
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 1.9e-41 174.5 470 32.3
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 9.3e-41 172.2 150 67.3
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 5.1e-39 166.4 456 32.5
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.3e-38 163.7 202 49.5
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 3.3e-38 163.7 275 42.5
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 1.4e-36 158.3 176 54.5
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 8.7e-31 139.0 132 61.4
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 1.7e-26 124.8 150 52.7
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.2e-25 120.6 177 45.8
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 5.4e-25 119.8 133 53.4
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.0e-23 115.5 150 54.0
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 1.0e-23 115.5 158 48.7
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 3.7e-21 107.1 95 61.1
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 1.0e-18 99.0 68 79.4
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 8.4e-18 95.9 60 85.0
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 1.5e-14 85.1 107 54.2
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 2.8e-13 80.9 94 56.4
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 1.7e-10 71.6 190 37.4
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 6.1e-08 63.2 186 29.0
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 5.7e-06 56.6 37 73.0


User provided reference genes

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