Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 2.5e-242 841.6 419 100.0
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 6.4e-145 518.1 463 59.6
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 4.3e-141 505.4 415 64.3
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.1e-139 500.7 462 56.9
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.4e-128 463.8 464 55.6
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 5.4e-128 461.8 518 50.6
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.2e-127 460.7 473 55.2
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 7.4e-125 451.4 467 54.6
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 9.6e-125 451.1 467 54.2
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 9.6e-125 451.1 469 53.3
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.3e-124 450.7 469 54.2
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 8.1e-124 448.0 472 54.2
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 3.1e-123 446.0 488 51.6
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 9.3e-120 434.5 479 51.8
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 2.1e-119 433.3 433 55.2
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 7.4e-117 424.9 449 52.3
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.8e-116 422.2 439 51.7
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.0e-115 419.1 446 51.3
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 9.0e-115 417.9 476 48.3
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 1.3e-113 414.1 419 54.7
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 1.7e-113 413.7 474 47.0
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 3.8e-113 412.5 429 52.7
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 4.2e-112 409.1 420 50.7
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 4.2e-112 409.1 420 50.7
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 5.5e-112 408.7 435 52.4
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 2.7e-111 406.4 487 49.3
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 6.7e-110 401.7 489 48.1
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 2.5e-109 399.8 455 49.0
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.8e-108 395.6 468 47.4
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 4.5e-106 389.0 479 47.0
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 7.6e-106 388.3 453 49.7
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 2.9e-105 386.3 447 49.9
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 3.8e-105 386.0 436 50.2
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 6.5e-105 385.2 442 49.3
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.4e-104 384.0 401 53.1
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.6e-103 379.4 478 47.1
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 7.9e-103 378.3 449 45.2
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 3.9e-102 375.9 450 44.0
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 3.9e-102 375.9 431 49.7
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 5.1e-102 375.6 418 51.7
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.3e-101 372.9 391 52.2
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 4.3e-101 372.5 441 48.3
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 5.7e-101 372.1 440 48.6
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 4.8e-100 369.0 462 47.6
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 8.2e-100 368.2 432 49.1
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.8e-99 367.1 421 45.1
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 2.4e-99 366.7 416 49.3
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.2e-98 364.4 436 47.5
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 7.7e-98 361.7 449 45.0
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.3e-97 360.9 492 44.7
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 2.7e-95 353.2 471 45.6
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 7.4e-93 345.1 485 44.9
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.9e-89 333.2 389 46.0
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 5.7e-85 318.9 380 45.5
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 1.0e-81 308.1 451 41.2
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 5.0e-81 305.8 370 45.1
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 7.2e-80 302.0 396 45.2
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 6.1e-79 298.9 376 43.9
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 5.7e-77 292.4 374 44.7
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 4.8e-76 289.3 383 44.9
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 8.2e-76 288.5 427 39.8
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.8e-75 287.3 376 42.8
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 9.1e-75 285.0 396 40.4
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 2.9e-73 280.0 387 42.6
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 8.5e-73 278.5 385 39.5
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 3.2e-72 276.6 362 42.8
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 2.1e-71 273.9 371 41.5
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 2.7e-71 273.5 445 40.2
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.7e-71 273.5 371 41.2
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 4.7e-71 272.7 371 41.5
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 4.7e-71 272.7 371 41.5
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.0e-70 271.6 392 39.8
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 3.0e-70 270.0 370 41.9
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 4.0e-70 269.6 371 41.0
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 4.0e-70 269.6 371 41.0
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.6e-69 266.9 377 41.6
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 4.4e-69 266.2 411 38.9
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 4.4e-69 266.2 378 42.6
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.3e-68 264.6 380 41.3
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 2.2e-68 263.8 380 40.3
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.8e-68 263.5 375 41.9
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 4.8e-68 262.7 378 41.5
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 3.1e-67 260.0 424 38.7
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 2.7e-66 256.9 378 42.3
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 2.9e-65 253.4 325 47.1
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.6e-63 247.7 348 39.9
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 3.0e-62 243.4 356 42.1
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 7.5e-61 238.8 303 44.6
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 3.7e-60 236.5 313 45.4
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.4e-59 234.6 371 38.0
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 7.0e-59 232.3 316 40.8
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 9.2e-59 231.9 378 37.6
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.2e-58 231.5 291 45.0
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 2.5e-56 223.8 339 39.2
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 3.3e-56 223.4 284 43.0
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 7.3e-56 222.2 302 44.0
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 2.1e-55 220.7 328 39.0
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 2.1e-55 220.7 397 36.3
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.1e-51 208.4 298 40.3
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 1.4e-51 208.0 318 37.4
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 3.2e-51 206.8 301 40.2
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.2e-51 206.8 280 40.7
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.2e-51 205.3 257 43.2
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.6e-50 204.5 377 34.0
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.0e-49 201.8 311 39.2
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.3e-49 201.4 307 37.5
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 3.0e-49 200.3 316 38.6
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 6.6e-49 199.1 305 40.0
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 8.6e-49 198.7 171 55.0
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 4.7e-47 193.0 376 34.6
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 8.0e-47 192.2 357 35.6
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 3.5e-42 176.8 233 43.8
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 3.5e-42 176.8 233 43.8
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.0e-42 176.0 292 35.6
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.0e-41 175.3 292 36.0
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.9e-40 171.0 318 37.4
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 2.5e-40 170.6 184 49.5
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 4.3e-40 169.9 138 55.8
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 7.3e-40 169.1 142 52.1
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 9.5e-40 168.7 222 41.4
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 2.8e-39 167.2 315 37.1
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 1.8e-38 164.5 231 42.0
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 6.8e-38 162.5 230 39.1
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.1e-35 152.5 342 32.7
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 3.5e-34 150.2 222 43.7
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 6.0e-34 149.4 147 53.1
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 6.0e-34 149.4 143 51.7
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 1.3e-33 148.3 143 51.7
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 5.1e-33 146.4 131 55.0
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 8.6e-33 145.6 344 31.7
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 5.6e-32 142.9 224 37.1
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.6e-31 141.4 106 61.3
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 6.2e-31 139.4 230 36.1
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.4e-30 137.5 154 46.8
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 1.0e-25 122.1 340 30.6
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 4.7e-23 113.2 152 38.2
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.8e-20 103.6 232 31.9
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 6.4e-20 102.8 130 46.2
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 8.4e-20 102.4 72 63.9
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.2e-19 100.5 146 37.7
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 2.1e-18 97.8 185 35.7
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 7.8e-18 95.9 252 27.8
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 7.3e-16 89.4 117 41.0
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.3e-15 88.6 107 40.2
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 3.5e-10 70.5 75 52.0
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 1.1e-08 65.5 65 53.8
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 4.0e-06 57.0 39 66.7


User provided reference genes

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