Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.4e-237 825.9 399 100.0
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.9e-147 525.8 365 73.2
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 3.8e-139 498.8 357 71.1
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.8e-136 490.0 333 72.7
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.4e-133 480.3 333 72.7
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 3.8e-131 472.2 379 64.9
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 5.4e-125 451.8 380 63.9
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 7.0e-125 451.4 362 63.3
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 7.0e-125 451.4 362 63.3
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 2.7e-124 449.5 362 63.0
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 3.5e-124 449.1 362 63.0
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.0e-123 447.6 368 62.5
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 6.6e-123 444.9 377 62.6
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.5e-122 443.7 364 62.1
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 4.2e-122 442.2 377 62.1
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 9.5e-122 441.0 351 64.4
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.6e-121 440.3 364 62.6
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 8.0e-121 438.0 325 66.5
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.4e-120 437.2 364 61.3
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 8.9e-120 434.5 367 61.9
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.2e-119 434.1 358 62.3
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.2e-119 434.1 334 67.7
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 2.9e-118 429.5 362 62.7
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 7.0e-117 424.9 334 65.0
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 3.5e-116 422.5 381 60.4
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 5.9e-116 421.8 445 52.8
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.0e-115 421.0 356 61.0
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.5e-114 417.2 384 57.0
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 1.9e-114 416.8 376 58.8
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 4.3e-114 415.6 366 58.7
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.4e-112 410.6 371 56.9
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 1.8e-112 410.2 376 57.4
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 4.0e-112 409.1 343 61.5
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 8.9e-112 407.9 379 57.3
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 8.9e-112 407.9 274 74.5
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 3.4e-111 406.0 340 60.9
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 3.4e-111 406.0 341 61.0
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 5.8e-111 405.2 370 58.4
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.7e-110 403.7 371 56.1
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 2.2e-110 403.3 376 57.2
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.1e-109 401.0 371 56.3
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 1.1e-109 401.0 378 56.1
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.4e-109 400.6 331 60.7
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.4e-109 399.8 371 56.3
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 3.2e-109 399.4 324 63.6
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 7.0e-109 398.3 376 56.1
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 9.2e-109 397.9 363 57.9
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 1.2e-108 397.5 377 55.4
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 2.0e-108 396.7 375 56.5
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 2.0e-108 396.7 353 59.2
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 2.7e-108 396.4 359 58.2
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 4.6e-108 395.6 321 62.0
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 6.0e-108 395.2 339 60.5
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 7.8e-108 394.8 373 57.6
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 1.1e-106 391.0 376 57.2
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 3.3e-106 389.4 369 56.6
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 4.3e-106 389.0 368 58.4
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 5.6e-106 388.7 330 60.0
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.6e-105 387.1 329 58.4
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.1e-105 386.7 368 56.0
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 2.1e-105 386.7 375 54.4
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.8e-105 386.3 373 56.0
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 3.6e-105 386.0 332 59.3
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.6e-105 386.0 358 55.0
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 6.2e-105 385.2 360 55.8
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 1.1e-104 384.4 373 54.4
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 2.3e-104 383.3 317 60.9
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 6.8e-104 381.7 330 58.8
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 2.0e-103 380.2 351 56.4
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.0e-103 380.2 367 56.1
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 2.6e-103 379.8 323 59.8
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 4.4e-103 379.0 330 59.7
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 4.4e-103 379.0 384 52.9
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 5.8e-103 378.6 357 54.6
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 7.5e-103 378.3 349 57.0
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 7.5e-103 378.3 342 57.3
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 3.7e-102 375.9 285 65.6
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 6.4e-102 375.2 330 59.4
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 1.1e-101 374.4 369 56.4
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 2.4e-101 373.2 369 53.7
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 3.2e-101 372.9 348 57.2
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 2.7e-100 369.8 331 57.1
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 3.5e-100 369.4 285 64.2
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 6.0e-100 368.6 323 58.5
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 6.0e-100 368.6 366 53.6
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 7.8e-100 368.2 292 61.3
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.0e-99 367.9 357 53.5
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 1.0e-99 367.9 357 53.8
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.3e-99 367.5 353 55.0
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 1.3e-99 367.5 349 54.4
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 1.7e-99 367.1 349 56.2
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 2.3e-99 366.7 274 66.8
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 5.1e-99 365.5 325 57.5
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 6.6e-99 365.2 336 57.1
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 1.5e-98 364.0 320 57.2
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 1.9e-98 363.6 319 57.4
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 2.5e-98 363.2 366 54.4
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.5e-98 363.2 356 53.7
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 3.3e-98 362.8 337 56.7
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 2.3e-96 356.7 330 57.9
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 3.1e-96 356.3 375 52.0
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 3.4e-95 352.8 348 54.3
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 3.4e-95 352.8 277 65.7
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 4.4e-95 352.4 286 62.2
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.9e-94 349.7 286 61.9
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 2.3e-91 340.1 280 63.2
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 3.0e-91 339.7 279 60.2
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 3.6e-89 332.8 330 55.8
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 8.9e-88 328.2 325 53.8
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 2.9e-86 323.2 325 52.3
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 2.9e-86 323.2 276 62.0
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 9.3e-85 318.2 285 56.5
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 1.6e-81 307.4 333 52.0
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 2.2e-78 297.0 292 54.8
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 6.7e-67 258.8 306 46.1
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.5e-66 256.9 280 46.8
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 4.3e-66 256.1 286 46.5
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 4.8e-65 252.7 267 47.6
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 3.2e-61 240.0 279 44.4
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.2e-60 238.0 193 61.7
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.5e-60 236.5 279 45.2
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 5.1e-59 232.6 288 43.8
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 2.6e-55 220.3 234 49.6
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 4.2e-45 186.4 163 58.3
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 2.5e-42 177.2 173 54.3
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 3.1e-32 143.7 143 55.2
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 9.1e-32 142.1 173 50.9
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 2.2e-30 137.5 143 51.7
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 4.4e-26 123.2 88 64.8
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.5e-21 108.2 103 56.3
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.6e-18 97.4 71 66.2
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 7.5e-18 95.9 88 58.0
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 1.7e-17 94.7 81 60.5
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 4.8e-17 93.2 122 47.5
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 4.8e-17 93.2 122 47.5
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 1.2e-15 88.6 88 52.3
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.4e-10 70.1 98 41.8
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 1.4e-08 65.1 58 56.9
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 2.9e-06 57.4 66 48.5
BcaC02g11914 Brassica carinata HOM05D005476 ORTHO05D032808 6.6e-06 56.2 115 34.8


User provided reference genes

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