Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 3.0e-204 714.9 356 100.0
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 1.0e-135 487.3 321 74.5
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 6.9e-132 474.6 317 73.5
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.2e-131 473.8 324 70.4
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 1.3e-130 470.3 317 71.6
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 2.3e-127 459.5 318 69.8
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 5.5e-121 438.3 317 67.2
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 3.7e-117 425.6 317 64.7
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 1.1e-116 424.1 323 65.0
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 1.4e-116 423.7 323 64.7
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 6.9e-116 421.4 317 65.6
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 2.0e-115 419.9 317 65.0
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 2.6e-115 419.5 319 63.9
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 4.5e-115 418.7 323 62.5
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 2.9e-114 416.0 323 62.8
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 1.9e-113 413.3 352 61.1
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 4.6e-112 408.7 317 64.7
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 4.6e-112 408.7 315 63.8
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 1.8e-111 406.8 322 62.1
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 6.7e-111 404.8 321 62.6
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 1.1e-110 404.1 323 62.8
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 1.5e-110 403.7 322 61.8
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.5e-110 402.9 321 62.3
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 3.3e-110 402.5 321 61.1
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 4.3e-110 402.1 317 61.8
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 4.3e-110 402.1 317 61.8
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 5.7e-110 401.7 369 56.4
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 1.3e-109 400.6 327 62.4
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 6.3e-109 398.3 275 69.5
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 8.2e-109 397.9 332 59.6
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 1.8e-108 396.7 319 61.4
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.1e-108 396.0 321 60.1
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.1e-108 395.6 321 59.8
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 9.1e-108 394.4 323 61.9
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 2.6e-107 392.9 322 59.9
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 4.5e-107 392.1 321 59.5
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 5.9e-107 391.7 319 62.1
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 1.0e-106 391.0 321 60.7
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 1.7e-106 390.2 317 59.9
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 2.9e-106 389.4 261 71.3
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 5.0e-106 388.7 325 59.7
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 5.0e-106 388.7 274 68.2
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.4e-105 387.1 323 56.7
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 1.4e-105 387.1 373 56.6
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 3.2e-105 386.0 313 62.6
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 4.2e-105 385.6 328 58.5
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 5.5e-105 385.2 321 59.2
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 5.5e-105 385.2 319 60.2
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 5.5e-105 385.2 322 59.9
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 7.2e-105 384.8 322 58.4
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 9.4e-105 384.4 330 57.0
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 9.4e-105 384.4 296 62.2
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 1.2e-104 384.0 324 61.4
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 2.1e-104 383.3 296 62.5
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 4.7e-104 382.1 330 57.0
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 4.7e-104 382.1 296 61.8
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 6.1e-104 381.7 318 59.1
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 6.1e-104 381.7 317 58.0
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 6.1e-104 381.7 320 59.7
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 1.0e-103 380.9 314 61.8
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.3e-103 379.8 330 56.7
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 2.3e-103 379.8 286 62.6
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 2.3e-103 379.8 286 62.6
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 2.3e-103 379.8 326 57.7
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 3.0e-103 379.4 271 64.9
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 3.0e-103 379.4 271 64.9
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 3.0e-103 379.4 271 64.9
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 3.0e-103 379.4 314 60.8
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 8.8e-103 377.9 317 59.6
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 1.1e-102 377.5 321 57.9
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 1.1e-102 377.5 317 59.6
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 1.1e-102 377.5 332 55.4
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 1.5e-102 377.1 325 58.8
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 3.3e-102 375.9 332 55.7
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 4.4e-102 375.6 317 58.7
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 7.4e-102 374.8 320 58.1
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 2.2e-101 373.2 327 56.9
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 3.7e-101 372.5 332 55.7
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 4.8e-101 372.1 319 58.9
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 4.8e-101 372.1 321 56.4
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 8.2e-101 371.3 327 57.5
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 2.4e-100 369.8 387 51.4
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 4.1e-100 369.0 313 59.1
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 7.0e-100 368.2 333 54.4
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 9.1e-100 367.9 274 62.8
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.6e-99 367.1 314 58.3
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 1.6e-99 367.1 329 56.8
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 1.6e-99 367.1 325 57.5
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 2.6e-99 366.3 321 57.3
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 3.5e-99 365.9 360 55.3
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 4.5e-99 365.5 319 56.1
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 1.0e-98 364.4 325 57.8
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 6.5e-98 361.7 319 56.7
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 8.5e-98 361.3 317 56.5
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 3.2e-97 359.4 319 58.9
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 9.4e-97 357.8 305 60.0
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.6e-96 357.1 329 55.6
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.6e-96 355.9 278 60.8
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 1.0e-95 354.4 276 62.7
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 2.3e-95 353.2 397 50.1
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 6.7e-95 351.7 278 60.1
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 8.8e-95 351.3 309 58.9
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 2.0e-94 350.1 275 61.5
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 7.5e-94 348.2 273 61.2
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.4e-92 344.0 293 56.7
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.4e-92 344.0 268 60.8
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 1.3e-90 337.4 315 56.5
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.5e-89 334.0 266 60.2
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 9.4e-89 331.3 301 57.1
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 4.7e-88 328.9 314 54.5
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.0e-87 327.8 319 53.6
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.0e-87 325.9 320 52.2
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 4.4e-86 322.4 305 55.4
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.2e-85 320.1 479 40.9
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 3.7e-85 319.3 222 69.4
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.8e-84 317.0 243 63.8
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 5.4e-84 315.5 227 67.8
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 1.7e-82 310.5 327 49.2
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 7.5e-78 295.0 292 52.4
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 2.0e-75 287.0 279 50.9
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 2.7e-75 286.6 258 55.8
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 4.5e-75 285.8 326 49.4
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 4.5e-75 285.8 274 50.0
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 3.5e-59 233.0 166 63.9
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 4.4e-54 216.1 170 64.1
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 9.2e-52 208.4 148 64.2
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.6e-51 207.6 377 36.6
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.2e-48 198.0 213 49.3
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 7.1e-44 182.2 191 53.4
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 8.6e-42 175.3 229 41.0
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 1.6e-40 171.0 134 61.9
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.3e-34 151.4 129 54.3
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.4e-31 141.4 127 55.9
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 5.4e-28 129.4 114 54.4
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 6.0e-27 125.9 159 42.8
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.1e-17 95.1 66 65.2
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 3.8e-13 80.1 104 43.3
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.9e-09 67.8 62 53.2
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 6.9e-07 59.3 43 60.5
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.5e-06 58.2 72 45.8


User provided reference genes

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