Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 4.8e-120 434.5 214 100.0
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 1.4e-87 326.6 250 63.6
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 9.0e-87 323.9 199 77.9
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 9.0e-87 323.9 238 66.4
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 2.0e-86 322.8 239 66.5
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.6e-86 322.4 232 68.1
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 2.6e-86 322.4 251 64.9
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 5.9e-86 321.2 231 66.2
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.0e-85 320.5 235 64.7
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 1.3e-85 320.1 231 66.2
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.3e-85 320.1 231 66.2
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.7e-85 319.7 231 66.2
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 8.5e-85 317.4 197 72.6
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 1.1e-84 317.0 232 65.1
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.4e-84 316.6 194 74.7
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.9e-84 316.2 248 63.7
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.2e-84 315.1 245 61.6
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 5.5e-84 314.7 235 63.8
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 7.2e-84 314.3 204 73.5
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 9.4e-84 313.9 247 62.8
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.2e-83 313.5 225 66.2
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.6e-83 313.2 197 73.6
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 4.6e-83 311.6 251 62.5
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 4.6e-83 311.6 232 64.2
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.0e-82 310.5 235 64.3
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.4e-82 310.1 247 63.2
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.4e-82 310.1 199 72.9
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.4e-82 310.1 235 63.8
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 1.4e-82 310.1 243 61.7
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.3e-82 309.3 199 73.4
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 2.3e-82 309.3 232 64.7
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.0e-82 308.9 247 62.8
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.9e-82 308.5 235 63.4
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 5.1e-82 308.1 200 68.5
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 5.1e-82 308.1 249 60.6
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 6.7e-82 307.8 206 68.9
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 8.8e-82 307.4 249 60.6
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 2.5e-81 305.8 253 60.1
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 4.3e-81 305.1 184 76.1
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 7.4e-81 304.3 255 61.2
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 2.2e-80 302.8 243 60.5
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 2.2e-80 302.8 246 61.4
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 2.2e-80 302.8 243 63.0
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 6.3e-80 301.2 229 62.4
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 6.3e-80 301.2 245 62.4
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 6.3e-80 301.2 288 55.6
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 8.2e-80 300.8 250 58.8
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.1e-79 300.4 198 70.2
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.1e-79 300.4 237 60.8
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.1e-79 300.4 194 72.2
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.4e-79 299.3 249 58.2
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 4.1e-79 298.5 197 69.5
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 4.1e-79 298.5 233 60.1
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 4.1e-79 298.5 233 60.1
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 6.9e-79 297.7 247 59.1
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 6.9e-79 297.7 206 69.4
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 9.1e-79 297.4 206 69.4
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.2e-78 297.0 222 65.3
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.2e-78 297.0 226 65.0
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.2e-78 297.0 215 67.0
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 4.5e-78 295.0 243 60.5
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 4.5e-78 295.0 248 58.9
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 6.5e-77 291.2 185 74.6
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 6.5e-77 291.2 240 57.5
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.1e-76 290.4 228 62.3
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 1.4e-76 290.0 199 68.3
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.9e-76 289.7 241 60.6
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.9e-76 289.7 243 58.8
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 4.2e-76 288.5 221 65.2
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 5.5e-76 288.1 240 57.5
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 7.2e-76 287.7 212 66.5
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 7.2e-76 287.7 249 57.4
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 7.2e-76 287.7 246 58.1
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 7.2e-76 287.7 242 60.7
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 7.2e-76 287.7 267 54.3
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 9.4e-76 287.3 242 58.3
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 1.6e-75 286.6 225 62.7
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 2.1e-75 286.2 223 63.2
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 2.1e-75 286.2 172 75.6
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 2.1e-75 286.2 233 60.9
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 2.7e-75 285.8 225 62.2
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 2.7e-75 285.8 222 63.1
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 4.7e-75 285.0 225 62.2
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 6.1e-75 284.6 194 69.1
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 1.0e-74 283.9 241 58.1
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 1.8e-74 283.1 225 61.3
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 3.9e-74 282.0 185 73.0
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 6.7e-74 281.2 225 62.7
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 6.7e-74 281.2 180 72.2
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 1.1e-73 280.4 201 67.2
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 4.4e-73 278.5 206 65.5
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 7.4e-73 277.7 220 62.3
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.7e-72 276.6 185 71.9
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.6e-70 270.0 193 66.3
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 3.5e-70 268.9 166 74.1
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 2.2e-69 266.2 203 63.1
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 2.9e-69 265.8 197 64.0
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 3.8e-69 265.4 344 45.1
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.5e-68 263.5 209 60.8
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 5.5e-68 261.5 212 61.8
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 3.3e-65 252.3 190 64.2
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 9.7e-65 250.8 186 64.0
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 8.2e-64 247.7 197 58.4
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 3.5e-62 242.3 226 53.1
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 5.9e-62 241.5 147 74.8
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 3.8e-61 238.8 192 59.4
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 1.9e-60 236.5 175 64.0
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 7.2e-60 234.6 202 57.9
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 1.2e-59 233.8 175 66.3
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 3.6e-59 232.3 237 51.5
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 2.3e-58 229.6 254 50.0
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 2.6e-57 226.1 167 63.5
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.2e-56 223.0 179 59.2
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 3.7e-56 222.2 189 56.6
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 5.5e-52 208.4 188 58.5
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 7.2e-52 208.0 181 56.4
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 2.1e-51 206.5 185 57.8
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.7e-51 205.3 162 58.6
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 7.5e-49 198.0 124 74.2
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 9.8e-49 197.6 169 56.2
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 2.8e-48 196.1 177 54.8
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 6.3e-48 194.9 182 52.7
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 3.5e-46 189.1 181 53.6
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 1.0e-45 187.6 179 48.6
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 2.7e-38 162.9 146 54.8
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 3.0e-37 159.5 101 71.3
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.9e-36 156.8 116 62.9
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 2.5e-36 156.4 202 47.0
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.6e-35 153.7 156 53.8
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.8e-35 152.9 137 59.1
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 8.0e-35 151.4 86 79.1
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 8.0e-35 151.4 166 51.2
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 8.0e-35 151.4 106 68.9
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 6.8e-34 148.3 131 59.5
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.9e-32 142.9 184 44.6
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 1.7e-29 133.7 132 51.5
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 2.3e-29 133.3 95 63.2
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 1.8e-26 123.6 119 53.8
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 1.2e-25 120.9 118 51.7
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 6.4e-24 115.2 185 36.2
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 7.8e-22 108.2 134 46.3
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 7.8e-22 108.2 134 46.3
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 1.0e-21 107.8 67 70.1
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.7e-21 107.1 72 66.7
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 2.0e-17 93.6 67 65.7
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 2.0e-17 93.6 70 61.4
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 8.4e-16 88.2 63 65.1
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 2.7e-14 83.2 65 61.5
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 6.0e-14 82.0 84 53.6
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 8.6e-13 78.2 52 69.2
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 8.6e-13 78.2 84 51.2
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.4e-10 70.1 105 40.0
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 2.7e-06 56.6 34 76.5


User provided reference genes

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