Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.9e-114 415.2 209 100.0
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 2.3e-74 282.7 227 67.8
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 3.1e-71 272.3 227 66.5
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 7.8e-67 257.7 224 63.4
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.0e-66 255.8 226 62.8
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.0e-66 255.8 226 62.8
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 2.3e-63 246.1 222 62.2
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.2e-62 243.8 229 60.7
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 3.2e-60 235.7 225 59.1
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 3.2e-60 235.7 227 59.5
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.7e-59 232.6 228 61.0
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 6.0e-59 231.5 203 61.6
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 3.0e-58 229.2 227 56.8
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 3.9e-58 228.8 226 58.4
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 3.9e-58 228.8 227 57.7
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 2.5e-57 226.1 227 56.4
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 5.6e-57 224.9 201 59.7
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.6e-56 223.4 233 57.5
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 2.1e-56 223.0 228 58.8
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 2.1e-56 223.0 223 56.5
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 3.6e-56 222.2 227 57.7
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 8.1e-56 221.1 210 60.0
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.1e-55 220.7 233 54.9
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.1e-55 220.7 230 54.3
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.4e-55 220.3 227 55.1
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.8e-55 219.9 228 56.6
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 3.1e-55 219.2 226 55.8
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 4.0e-55 218.8 227 57.3
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 8.9e-55 217.6 227 56.8
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 8.9e-55 217.6 226 56.2
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-54 216.9 206 60.2
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.5e-54 216.9 206 60.2
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.5e-54 216.9 227 54.6
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.6e-54 216.1 227 56.8
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 2.6e-54 216.1 212 57.5
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 3.4e-54 215.7 213 58.7
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 3.4e-54 215.7 227 54.6
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 4.4e-54 215.3 230 53.9
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 4.4e-54 215.3 196 58.7
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 4.4e-54 215.3 231 56.3
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 5.8e-54 214.9 191 61.3
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.5e-54 214.5 206 60.2
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 1.3e-53 213.8 241 51.9
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 2.9e-53 212.6 225 56.9
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 2.9e-53 212.6 230 55.2
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 8.3e-53 211.1 230 55.2
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.1e-52 210.7 175 65.1
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.9e-52 209.9 227 53.7
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.2e-52 209.1 195 59.5
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 4.1e-52 208.8 226 54.4
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 5.4e-52 208.4 190 61.1
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 7.1e-52 208.0 229 55.9
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.6e-51 206.8 227 53.7
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.7e-51 206.1 212 56.1
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 7.8e-51 204.5 228 54.4
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 7.8e-51 204.5 181 58.0
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.3e-50 203.8 228 53.5
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 1.7e-50 203.4 224 55.8
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 3.0e-50 202.6 223 53.8
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.0e-50 202.6 225 52.9
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 3.9e-50 202.2 228 52.2
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.1e-50 201.8 227 52.4
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 6.6e-50 201.4 244 49.6
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 6.6e-50 201.4 205 55.1
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.1e-49 200.7 218 53.7
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.1e-49 200.7 225 52.9
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.1e-49 200.7 200 58.5
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.5e-49 200.3 200 57.5
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 1.5e-49 200.3 199 57.8
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.3e-49 199.1 226 52.7
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 3.3e-49 199.1 220 52.7
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 4.3e-49 198.7 205 55.6
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.3e-49 198.0 227 53.7
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 2.1e-48 196.4 229 52.4
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 2.8e-48 196.1 227 51.1
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.8e-48 196.1 225 52.9
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 2.8e-48 196.1 176 60.2
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 8.1e-48 194.5 158 65.8
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 1.4e-47 193.7 206 55.3
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 1.8e-47 193.4 207 54.6
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 3.1e-47 192.6 197 56.9
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 4.0e-47 192.2 221 53.4
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 5.2e-47 191.8 221 52.5
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 6.8e-47 191.4 226 53.1
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.5e-46 190.3 246 49.2
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 5.8e-46 188.3 270 44.8
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 2.2e-45 186.4 158 66.5
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 2.9e-45 186.0 226 52.2
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 3.8e-45 185.7 220 51.8
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.9e-45 185.3 159 62.9
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.9e-45 185.3 178 59.0
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 6.4e-45 184.9 193 56.0
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 6.4e-45 184.9 225 53.8
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.9e-44 183.3 203 54.7
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.9e-44 183.3 195 54.4
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 2.4e-44 183.0 220 51.4
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.2e-44 182.2 205 50.7
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 4.2e-44 182.2 181 58.0
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 5.4e-44 181.8 210 50.0
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.2e-43 180.6 228 50.4
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 2.7e-43 179.5 207 52.7
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 3.5e-43 179.1 208 52.9
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 3.5e-43 179.1 136 66.9
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 6.0e-43 178.3 222 49.5
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 7.8e-43 177.9 205 50.7
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 7.8e-43 177.9 137 65.7
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.3e-42 177.2 200 53.0
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 3.0e-42 176.0 209 51.2
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 3.0e-42 176.0 203 54.2
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 5.1e-42 175.3 206 51.5
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 6.6e-42 174.9 239 46.4
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 8.7e-42 174.5 209 50.2
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.1e-41 174.1 203 50.2
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 2.5e-41 172.9 214 51.4
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 3.3e-41 172.6 204 51.5
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 9.6e-41 171.0 206 49.5
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 9.6e-41 171.0 239 46.9
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 1.6e-40 170.2 209 52.2
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 2.4e-39 166.4 209 50.2
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 3.1e-39 166.0 209 50.2
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 3.1e-39 166.0 209 50.2
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 5.3e-39 165.2 206 48.5
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 6.9e-39 164.9 232 49.6
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 6.9e-39 164.9 223 47.1
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 9.0e-39 164.5 228 47.4
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.5e-38 163.7 206 49.5
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 2.6e-38 162.9 202 50.5
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 3.4e-38 162.5 199 49.2
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 7.6e-38 161.4 229 47.6
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 9.9e-38 161.0 231 45.9
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.3e-37 160.6 198 53.0
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 6.4e-37 158.3 150 56.7
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.1e-36 157.5 195 52.8
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.4e-36 157.1 188 48.4
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 3.2e-36 156.0 205 48.8
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 3.2e-36 156.0 235 44.3
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 4.2e-36 155.6 197 48.2
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 5.4e-36 155.2 211 46.0
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 1.6e-35 153.7 121 66.9
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 2.1e-35 153.3 228 46.1
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.5e-35 152.5 189 48.1
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 3.5e-35 152.5 198 48.0
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 1.0e-34 151.0 102 72.5
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.7e-34 150.2 189 45.0
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.7e-34 150.2 176 51.1
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 3.0e-34 149.4 188 46.8
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.5e-33 147.1 191 48.7
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 4.3e-33 145.6 259 40.9
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 5.6e-33 145.2 119 61.3
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 9.6e-33 144.4 177 48.6
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 9.9e-30 134.4 204 42.2
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.9e-29 132.1 116 60.3
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 4.2e-28 129.0 84 72.6
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 4.2e-28 129.0 84 72.6
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.8e-26 123.6 224 39.7
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 9.6e-25 117.9 158 48.1
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.8e-23 113.6 114 52.6
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 4.0e-23 112.5 79 65.8
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 1.5e-22 110.5 167 45.5
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 1.1e-20 104.4 109 51.4
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 7.9e-19 98.2 79 64.6
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 5.1e-18 95.5 93 53.8
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.2e-11 74.3 80 47.5
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.1e-11 73.6 225 35.1
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 5.7e-09 65.5 40 75.0
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.7e-08 62.8 133 31.6
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 2.6e-06 56.6 41 61.0


User provided reference genes

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