Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 0.0e+00 1201.4 618 100.0
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 4.4e-275 951.0 618 77.2
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 1.1e-236 823.5 604 68.4
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 1.6e-224 783.1 609 64.7
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 3.0e-223 778.9 609 64.4
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 1.1e-222 776.9 609 64.2
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 2.8e-221 772.3 644 61.3
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 3.1e-220 768.8 620 64.2
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 4.6e-216 755.0 608 62.3
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 2.3e-215 752.7 619 63.5
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 3.0e-215 752.3 618 62.8
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 4.3e-214 748.4 609 62.2
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 1.6e-213 746.5 577 66.2
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 8.1e-213 744.2 608 61.2
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 6.9e-212 741.1 611 62.7
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 1.2e-211 740.3 622 61.4
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 1.7e-210 736.5 581 65.2
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 2.9e-210 735.7 610 60.5
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 9.3e-209 730.7 611 61.7
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 8.7e-207 724.2 624 61.1
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 1.5e-206 723.4 679 56.4
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 9.6e-206 720.7 604 61.3
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 9.6e-206 720.7 611 61.9
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.4e-204 716.8 604 61.1
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.8e-204 716.5 604 61.6
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 4.0e-204 715.3 604 61.4
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 6.9e-204 714.5 609 60.4
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 1.2e-203 713.8 610 60.0
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 1.2e-203 713.8 612 61.6
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 7.6e-203 711.1 616 59.9
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 1.3e-202 710.3 612 59.3
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 4.9e-202 708.4 602 59.0
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 1.1e-201 707.2 606 59.1
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 1.4e-201 706.8 619 61.2
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 2.4e-201 706.1 618 59.4
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.2e-200 703.7 612 60.8
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 1.6e-200 703.4 607 60.0
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 4.6e-200 701.8 616 58.9
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.0e-199 700.7 622 60.1
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 1.0e-199 700.7 609 59.4
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 3.0e-199 699.1 581 63.2
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 3.0e-199 699.1 611 57.4
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 4.3e-198 695.3 608 59.0
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 4.3e-198 695.3 623 59.9
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 7.4e-198 694.5 608 57.4
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 9.6e-198 694.1 606 58.4
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 1.6e-197 693.3 584 62.2
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 2.1e-197 693.0 614 59.1
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 2.1e-197 693.0 612 59.3
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 2.8e-197 692.6 609 58.1
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 3.7e-197 692.2 478 72.4
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 6.2e-197 691.4 610 60.5
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 8.1e-197 691.0 610 59.2
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 1.4e-196 690.3 612 59.2
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 1.8e-196 689.9 610 60.5
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 4.5e-195 685.3 620 57.3
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 1.3e-194 683.7 579 61.5
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.3e-194 683.7 620 58.7
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 3.8e-194 682.2 613 58.7
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 8.4e-194 681.0 614 57.7
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.1e-193 680.6 624 56.9
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 2.4e-193 679.5 611 58.4
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 4.2e-193 678.7 622 58.0
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 7.1e-193 677.9 607 58.5
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 9.3e-193 677.6 613 57.9
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 3.5e-192 675.6 598 59.4
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 4.6e-192 675.2 609 57.5
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 6.0e-192 674.9 606 57.8
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 6.0e-192 674.9 605 58.0
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 7.9e-192 674.5 607 59.5
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 1.0e-191 674.1 606 57.9
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 2.3e-191 672.9 594 59.1
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 5.1e-191 671.8 605 57.2
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 6.7e-191 671.4 605 58.0
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 7.4e-190 667.9 613 58.1
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 9.6e-190 667.5 617 57.7
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 1.3e-189 667.2 613 58.1
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 1.6e-189 666.8 578 58.8
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 2.1e-189 666.4 596 60.1
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 3.7e-189 665.6 611 57.6
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 3.7e-189 665.6 536 62.3
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 8.2e-189 664.5 591 58.7
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 2.4e-188 662.9 617 57.7
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 1.9e-185 653.3 607 56.8
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 4.6e-184 648.7 600 56.7
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 7.9e-184 647.9 558 58.1
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 8.7e-183 644.4 657 54.9
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 8.7e-183 644.4 580 57.9
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 9.7e-182 641.0 615 54.8
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 1.3e-181 640.6 612 55.1
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 1.7e-178 630.2 567 58.2
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 2.2e-178 629.8 609 56.0
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 6.1e-176 621.7 609 55.7
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 5.9e-171 605.1 608 52.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.1e-169 600.9 598 53.7
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 8.8e-167 591.3 600 51.0
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.5e-166 590.5 615 51.5
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 2.6e-166 589.7 618 53.2
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 1.8e-164 583.6 547 57.4
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 3.1e-164 582.8 596 53.0
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 3.1e-164 582.8 618 51.8
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 4.5e-163 578.9 623 51.0
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 1.5e-158 563.9 624 50.0
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 2.6e-158 563.1 569 54.1
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.5e-153 547.4 615 49.9
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 1.2e-152 544.3 577 53.0
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 5.3e-148 528.9 446 60.1
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 2.9e-146 523.1 341 73.6
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 5.4e-140 502.3 607 46.6
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 3.3e-137 493.0 548 49.3
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 8.3e-133 478.4 512 50.6
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 1.6e-131 474.2 439 56.0
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 2.2e-117 427.2 635 39.5
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 3.0e-106 390.2 612 37.3
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 1.6e-104 384.4 560 39.6
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 2.6e-102 377.1 582 36.6
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 2.6e-86 323.9 244 63.1
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 3.4e-86 323.6 352 48.6
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 3.1e-79 300.4 375 45.1
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 1.6e-75 288.1 393 43.3
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 5.7e-73 279.6 249 56.6
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 3.5e-67 260.4 232 58.2
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 1.0e-66 258.8 427 34.2
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 9.7e-57 225.7 310 43.2
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 1.4e-55 221.9 165 61.8
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 4.5e-54 216.9 185 61.1
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 2.0e-33 148.3 204 45.1
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 2.0e-30 138.3 147 44.9
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 5.5e-28 130.2 265 31.7
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 7.5e-25 119.8 87 71.3
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.7e-21 108.6 328 28.4
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 2.9e-21 107.8 473 23.7
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 1.8e-18 98.6 227 34.8
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 1.7e-16 92.0 235 30.2
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 1.1e-15 89.4 47 83.0
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.0e-13 82.8 87 57.5
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 1.1e-12 79.3 170 30.6
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 3.4e-09 67.8 53 64.2


User provided reference genes

Program Settings