Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00567 Erythranthe guttata HOM05D000764 ORTHO05D018913 2.8e-48 194.9 93 100.0
Oeu024288.1 Olea europaea HOM05D000764 ORTHO05D002006 1.7e-26 122.5 92 62.0
Cc01_g02010 Coffea canephora HOM05D000764 ORTHO05D002006 1.1e-25 119.8 97 60.8
Cc01_g02040 Coffea canephora HOM05D000764 ORTHO05D002006 9.5e-25 116.7 98 60.2
Oeu024286.2 Olea europaea HOM05D000764 ORTHO05D002006 6.2e-24 114.0 94 59.6
TWI60G0363 Tripterygium wilfordii HOM05D000764 ORTHO05D002006 3.1e-23 111.7 91 57.1
MSTRG.18014 Avicennia marina HOM05D000764 ORTHO05D002006 2.0e-22 109.0 91 60.4
Hma1.2p1_0843F.1_g227270 Hydrangea macrophylla HOM05D000764 ORTHO05D002006 5.8e-22 107.5 90 58.9
SGA_v2.0_scaffold6G03282 Striga asiatica HOM05D000764 ORTHO05D002006 9.9e-22 106.7 91 58.2
Rhsim13G0231100 Rhododendron simsii HOM05D000764 ORTHO05D002006 1.3e-21 106.3 91 56.0
Ciclev10014402m.g Citrus clementina HOM05D000764 ORTHO05D002006 4.9e-21 104.4 91 56.0
QL01p008424 Quercus lobata HOM05D000764 ORTHO05D002006 6.4e-21 104.0 91 54.9
QL01p008442 Quercus lobata HOM05D000764 ORTHO05D002006 6.4e-21 104.0 91 54.9
Nitab4.5_0000827g0060 Nicotiana tabacum HOM05D000764 ORTHO05D002006 8.4e-21 103.6 94 59.6
Cpa.g.sc119.66 Carica papaya HOM05D000764 ORTHO05D018913 1.4e-20 102.8 95 52.6
Carub.0001s4382 Capsella rubella HOM05D000764 ORTHO05D002006 1.9e-20 102.4 92 52.2
Thecc.09G209100 Theobroma cacao HOM05D000764 ORTHO05D002006 1.9e-20 102.4 96 54.2
CiPaw.14G134800 Carya illinoinensis HOM05D000764 ORTHO05D002006 3.2e-20 101.7 91 52.7
CANSAT78G0430 Cannabis sativa HOM05D000764 ORTHO05D002006 5.4e-20 100.9 89 57.3
vmacro04225 Vaccinium macrocarpon HOM05D000764 ORTHO05D002006 5.4e-20 100.9 89 52.8
CANSAT78G1467 Cannabis sativa HOM05D000764 ORTHO05D002006 9.2e-20 100.1 89 57.3
CiPaw.13G175200 Carya illinoinensis HOM05D000764 ORTHO05D002006 9.2e-20 100.1 91 54.9
Dinv23881 Davidia involucrata HOM05D000764 ORTHO05D002006 9.2e-20 100.1 91 54.9
Cfa009591 Carpinus fangiana HOM05D000764 ORTHO05D002006 1.2e-19 99.8 91 56.0
COL.COLO4_35026 Corchorus olitorius HOM05D000764 ORTHO05D002006 1.2e-19 99.8 98 52.0
Actinidia06846 Actinidia chinensis HOM05D000764 ORTHO05D002006 2.7e-19 98.6 91 56.0
CARHR044970 Cardamine hirsuta HOM05D000764 ORTHO05D002006 3.5e-19 98.2 92 51.1
DCAR_001986 Daucus carota HOM05D000764 ORTHO05D002006 3.5e-19 98.2 91 57.1
Cfa009594 Carpinus fangiana HOM05D000764 ORTHO05D002006 4.6e-19 97.8 89 52.8
MD03G1006300 Malus domestica HOM05D000764 ORTHO05D002006 4.6e-19 97.8 91 57.1
Manes.03G087803 Manihot esculenta HOM05D000764 ORTHO05D002006 4.6e-19 97.8 89 50.6
unitig_61.g26332 Utricularia gibba HOM05D000764 ORTHO05D002006 7.8e-19 97.1 91 53.8
Ciclev10014404m.g Citrus clementina HOM05D000764 ORTHO05D002006 1.0e-18 96.7 91 52.7
COL.COLO4_35021 Corchorus olitorius HOM05D000764 ORTHO05D002006 1.0e-18 96.7 93 52.7
Sabra01G0004900 Salix brachista HOM05D000764 ORTHO05D002006 1.0e-18 96.7 90 52.2
Sabra01G0005200 Salix brachista HOM05D000764 ORTHO05D002006 1.0e-18 96.7 90 52.2
Hund21637 Selenicereus undatus HOM05D000764 ORTHO05D002006 1.3e-18 96.3 90 52.2
Duzib150G1253 Durio zibethinus HOM05D000764 ORTHO05D002006 3.0e-18 95.1 94 52.1
Potri.001G006700 Populus trichocarpa HOM05D000764 ORTHO05D002006 3.0e-18 95.1 90 51.1
AL1G63360 Arabidopsis lyrata HOM05D000764 ORTHO05D002006 3.9e-18 94.7 92 48.9
AT1G55320 Arabidopsis thaliana HOM05D000764 ORTHO05D002006 3.9e-18 94.7 91 48.4
BraA06t23243Z Brassica rapa HOM05D000764 ORTHO05D002006 5.1e-18 94.4 91 48.4
Gohir.D13G216800 Gossypium hirsutum HOM05D000764 ORTHO05D002006 5.1e-18 94.4 92 50.0
Gorai.013G247300 Gossypium raimondii HOM05D000764 ORTHO05D002006 5.1e-18 94.4 92 50.0
Sp1g40980 Schrenkiella parvula HOM05D000764 ORTHO05D002006 6.6e-18 94.0 91 47.3
Cfa009592 Carpinus fangiana HOM05D000764 ORTHO05D002006 8.6e-18 93.6 89 52.8
Gohir.A13G212900 Gossypium hirsutum HOM05D000764 ORTHO05D002006 8.6e-18 93.6 92 48.9
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 1.1e-17 93.2 91 48.4
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 1.5e-17 92.8 91 47.3
Haze_22960 Corylus avellana HOM05D000764 ORTHO05D002006 1.5e-17 92.8 89 50.6
Haze_22966 Corylus avellana HOM05D000764 ORTHO05D002006 1.5e-17 92.8 89 50.6
Duzib170G0060 Durio zibethinus HOM05D000764 ORTHO05D002006 1.5e-17 92.8 98 48.0
Thecc.09G209300 Theobroma cacao HOM05D000764 ORTHO05D002006 1.9e-17 92.4 90 53.3
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 3.3e-17 91.7 91 47.3
Gorai.004G094400 Gossypium raimondii HOM05D000764 ORTHO05D002006 3.3e-17 91.7 94 48.9
GSVIVG01025430001 Vitis vinifera HOM05D000764 ORTHO05D002006 3.3e-17 91.7 91 48.4
FvH4_3g45320 Fragaria vesca HOM05D000764 ORTHO05D002006 4.3e-17 91.3 91 48.4
FAN11G2962 Fragaria x ananassa HOM05D000764 ORTHO05D002006 4.3e-17 91.3 91 48.4
RcHm_v2.0_Chr5g0083011 Rosa chinensis HOM05D000764 ORTHO05D002006 5.6e-17 90.9 91 49.5
THA.LOC104822677 Tarenaya hassleriana HOM05D000764 ORTHO05D002006 5.6e-17 90.9 91 49.5
GSVIVG01025429001 Vitis vinifera HOM05D000764 ORTHO05D002006 5.6e-17 90.9 91 47.3
ClCG02G024010 Citrullus lanatus HOM05D000764 ORTHO05D002006 9.6e-17 90.1 91 49.5
Thhalv10011267m.g Eutrema salsugineum HOM05D000764 ORTHO05D002006 9.6e-17 90.1 91 46.2
Aa31LG10G1080 Aethionema arabicum HOM05D000764 ORTHO05D002006 1.2e-16 89.7 92 45.7
Lj1C544G1 Lonicera japonica HOM05D000764 ORTHO05D002006 1.2e-16 89.7 88 51.1
Lj1C547G1 Lonicera japonica HOM05D000764 ORTHO05D002006 1.2e-16 89.7 88 52.3
Atru.chr3.2354 Acer truncatum HOM05D000764 ORTHO05D002006 1.6e-16 89.4 94 48.9
FAN16G1610 Fragaria x ananassa HOM05D000764 ORTHO05D002006 1.6e-16 89.4 91 47.3
TAR636G3372 Trochodendron aralioides HOM05D000764 ORTHO05D002006 1.6e-16 89.4 88 48.9
Aqoxy1G00434 Aquilegia oxysepala HOM05D000764 ORTHO05D002006 2.1e-16 89.0 88 48.9
MELO3C014683.2 Cucumis melo HOM05D000764 ORTHO05D002006 2.1e-16 89.0 91 49.5
Ah.06g190560 Amaranthus hybridus HOM05D000764 ORTHO05D002006 2.8e-16 88.6 83 49.4
Glyma.05G157600 Glycine max HOM05D000764 ORTHO05D002006 2.8e-16 88.6 92 53.3
MELO3C014682.2 Cucumis melo HOM05D000764 ORTHO05D002006 3.6e-16 88.2 91 48.4
MELO3C031046.2 Cucumis melo HOM05D000764 ORTHO05D002006 3.6e-16 88.2 91 48.4
Gohir.A08G079900 Gossypium hirsutum HOM05D000764 ORTHO05D002006 3.6e-16 88.2 94 48.9
Nn2g15811 Nelumbo nucifera HOM05D000764 ORTHO05D002006 4.7e-16 87.8 91 44.0
Prupe.6G005900 Prunus persica HOM05D000764 ORTHO05D002006 4.7e-16 87.8 89 53.9
FAN21G0552 Fragaria x ananassa HOM05D000764 ORTHO05D002006 6.2e-16 87.4 91 47.3
Lj1A542T43 Lonicera japonica HOM05D000764 ORTHO05D002006 8.1e-16 87.0 88 51.1
Lj1A545G61 Lonicera japonica HOM05D000764 ORTHO05D011045 8.1e-16 87.0 88 51.1
CAN.G575.3 Capsicum annuum HOM05D000764 ORTHO05D002006 1.1e-15 86.7 92 55.4
RcHm_v2.0_Chr5g0083091 Rosa chinensis HOM05D000764 ORTHO05D002006 1.1e-15 86.7 91 48.4
CsaV3_4G023320 Cucumis sativus L. HOM05D000764 ORTHO05D002006 2.4e-15 85.5 91 46.2
Eucgr.J01807 Eucalyptus grandis HOM05D000764 ORTHO05D002006 3.1e-15 85.1 96 44.8
Eucgr.L00848 Eucalyptus grandis HOM05D000764 ORTHO05D002006 4.0e-15 84.7 98 44.9
Lsat_1_v5_gn_6_51980 Lactuca sativa HOM05D000764 ORTHO05D002006 4.0e-15 84.7 89 48.3
Eucgr.J01811 Eucalyptus grandis HOM05D000764 ORTHO05D002006 5.2e-15 84.3 96 43.8
Eucgr.J01813 Eucalyptus grandis HOM05D000764 ORTHO05D002006 5.2e-15 84.3 96 45.8
Eucgr.L01220 Eucalyptus grandis HOM05D000764 ORTHO05D002006 5.2e-15 84.3 96 45.8
Eucgr.J01816 Eucalyptus grandis HOM05D000764 ORTHO05D002006 8.9e-15 83.6 96 45.8
ATR0001G035 Amborella trichopoda HOM05D000764 ORTHO05D002006 2.6e-14 82.0 90 46.7
Eucgr.L00845 Eucalyptus grandis HOM05D000764 ORTHO05D002006 2.6e-14 82.0 96 44.8
Hma1.2p1_0843F.1_g227290 Hydrangea macrophylla HOM05D000764 ORTHO05D018913 4.4e-14 81.3 78 51.3
MBI04_g09730_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D002006 4.4e-14 81.3 89 47.2
Potri.001G006600 Populus trichocarpa HOM05D000764 ORTHO05D002006 4.4e-14 81.3 89 42.7
arahy.Tifrunner.gnm1.ann1.VB8JJE Arachis hypogaea HOM05D000764 ORTHO05D002006 1.3e-13 79.7 93 43.0
arahy.Tifrunner.gnm1.ann1.GHI7N6 Arachis hypogaea HOM05D000764 ORTHO05D002006 1.7e-13 79.3 93 43.0
Ca_17929_v3 Cicer arietinum L. HOM05D000764 ORTHO05D002006 2.2e-13 79.0 89 46.1
TPR.G24398 Trifolium pratense HOM05D000764 ORTHO05D002006 2.2e-13 79.0 89 46.1
Ca_17951_v3 Cicer arietinum L. HOM05D000764 ORTHO05D002006 2.9e-13 78.6 90 45.6
HanXRQChr02g0056931 Helianthus annuus HOM05D000764 ORTHO05D002006 2.9e-13 78.6 89 43.8
EL10Ac4g10364 Beta vulgaris HOM05D000764 ORTHO05D002006 3.8e-13 78.2 88 47.7
Sc09g0000160 Simmondsia chinensis HOM05D000764 ORTHO05D002006 4.9e-13 77.8 98 38.8
SEGI_14567 Sequoiadendron giganteum HOM05D000764 ORTHO05D002006 6.4e-13 77.4 89 42.7
SEGI_28669 Sequoiadendron giganteum HOM05D000764 ORTHO05D002006 6.4e-13 77.4 89 42.7
CSS0005240 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D002006 1.1e-12 76.6 76 51.3
Sed0011933 Sechium edule HOM05D000764 ORTHO05D002006 1.9e-12 75.9 91 41.8
Psat7g071560 Pisum sativum HOM05D000764 ORTHO05D002006 2.4e-12 75.5 89 48.3
arahy.Tifrunner.gnm1.ann1.M2JIZN Arachis hypogaea HOM05D000764 ORTHO05D002006 3.2e-12 75.1 95 43.2
AUR62019181 Chenopodium quinoa HOM05D000764 ORTHO05D002006 3.2e-12 75.1 80 46.2
Psat7g073760 Pisum sativum HOM05D000764 ORTHO05D002006 3.2e-12 75.1 89 47.2
Rhsim13G0231200 Rhododendron simsii HOM05D000764 ORTHO05D002006 3.2e-12 75.1 62 54.8
Medtr8g085680 Medicago truncatula HOM05D000764 ORTHO05D002006 4.2e-12 74.7 89 38.2
Glyma.08G113600 Glycine max HOM05D000764 ORTHO05D002006 1.2e-11 73.2 93 48.4
HPP92_000824 Vanilla planifolia HOM05D000764 ORTHO05D002006 1.2e-11 73.2 89 42.7
Lalb_Chr07g0186621 Lupinus albus HOM05D000764 ORTHO05D002006 1.6e-11 72.8 89 46.1
Lj4g0009943 Lotus japonicus HOM05D000764 ORTHO05D002006 2.7e-11 72.0 92 46.7
PSO339G4083 Papaver somniferum HOM05D000764 ORTHO05D002006 2.7e-11 72.0 96 43.8
PSO384G0444 Papaver somniferum HOM05D000764 ORTHO05D002006 2.7e-11 72.0 96 43.8
SHI31278 Sapria himalayana HOM05D000764 ORTHO05D018913 3.5e-11 71.6 89 43.8
CDE05G2276 Ceratophyllum demersum HOM05D000764 ORTHO05D002006 1.7e-10 69.3 91 40.7
Lj4g0001273 Lotus japonicus HOM05D000764 ORTHO05D002006 2.3e-10 68.9 72 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2374 Anthoceros agrestis HOM05D000764 ORTHO05D002006 3.0e-10 68.6 92 46.7
SMO348G0037 Selaginella moellendorffii HOM05D000764 ORTHO05D002006 3.0e-10 68.6 89 41.6
Medtr8g086050 Medicago truncatula HOM05D000764 ORTHO05D002006 8.7e-10 67.0 90 40.0
Lalb_Chr13g0295011 Lupinus albus HOM05D000764 ORTHO05D002006 2.5e-09 65.5 90 43.3
Pp3c5_15640 Physcomitrium patens HOM05D000764 ORTHO05D002006 2.5e-09 65.5 91 40.7
Lalb_Chr13g0295111 Lupinus albus HOM05D000764 ORTHO05D002006 2.1e-08 62.4 92 41.3
Zm00001eb061470 Zea mays HOM05D000764 ORTHO05D002006 2.8e-08 62.0 89 36.0
TPR.G24370 Trifolium pratense HOM05D000764 ORTHO05D002006 3.6e-08 61.6 78 43.6
SMO348G0020 Selaginella moellendorffii HOM05D000764 ORTHO05D002006 4.8e-08 61.2 83 39.8
arahy.Tifrunner.gnm1.ann1.TJI57B Arachis hypogaea HOM05D000764 ORTHO05D002006 1.8e-07 59.3 73 42.5
MD11G1009200 Malus domestica HOM05D000764 ORTHO05D018913 5.3e-07 57.8 46 54.3
Os03g0805500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D018913 1.2e-06 56.6 42 54.8
Mapoly0053s0036 Marchantia polymorpha HOM05D000764 ORTHO05D002006 2.0e-06 55.8 87 37.9
Pp3c16_8680 Physcomitrium patens HOM05D000764 ORTHO05D002006 3.4e-06 55.1 91 37.4


User provided reference genes

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