Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 0.0e+00 1620.1 865 100.0
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 1.4e-162 577.8 1029 43.0
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 4.2e-159 566.2 988 44.0
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 3.4e-100 370.5 1095 32.4
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.2e-99 367.9 1074 33.1
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.2e-99 367.9 1084 32.4
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 9.3e-98 362.5 1021 33.5
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 1.3e-94 352.1 1093 32.3
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 2.4e-93 347.8 1055 31.8
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 5.8e-92 343.2 1087 32.3
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 2.4e-90 337.8 1089 32.0
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 3.5e-89 334.0 1088 32.3
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.3e-88 332.0 1026 31.4
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 7.6e-84 316.2 1088 30.3
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 3.8e-83 313.9 1033 32.0
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 7.9e-81 306.2 1025 31.1
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 1.0e-80 305.8 1027 30.8
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 6.7e-80 303.1 1095 30.5
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 2.5e-79 301.2 979 31.6
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 7.4e-79 299.7 1101 30.7
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 1.6e-78 298.5 1099 29.3
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 2.1e-78 298.1 1040 30.9
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 2.8e-78 297.7 1100 29.5
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 1.1e-77 295.8 1095 29.4
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 4.1e-77 293.9 987 30.9
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 9.0e-77 292.7 1031 30.1
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 1.2e-76 292.4 1016 29.7
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 1.5e-76 292.0 1052 30.8
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 3.4e-76 290.8 1091 28.8
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 4.5e-76 290.4 1005 31.3
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 7.6e-76 289.7 1003 32.2
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.0e-75 287.0 1098 29.5
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 6.5e-75 286.6 1100 29.4
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 4.2e-74 283.9 905 31.5
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 5.5e-74 283.5 1021 30.7
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 9.3e-74 282.7 1056 31.0
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.1e-73 281.6 1100 29.3
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 3.5e-73 280.8 1080 29.4
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 3.0e-72 277.7 973 30.4
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 1.3e-70 272.3 1008 29.7
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 2.2e-70 271.6 1053 30.4
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 6.3e-70 270.0 1065 29.5
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.8e-69 268.5 1094 30.1
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 3.1e-69 267.7 913 32.4
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 5.3e-69 266.9 1089 30.0
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 9.0e-69 266.2 1026 29.2
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.7e-67 261.9 1095 29.7
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 1.4e-66 258.8 1065 28.8
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 5.5e-66 256.9 777 32.8
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 7.2e-66 256.5 909 31.2
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 9.4e-66 256.1 989 31.0
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 9.4e-66 256.1 1095 28.2
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 7.9e-65 253.1 1084 28.9
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 8.2e-62 243.0 1017 29.7
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 1.1e-61 242.7 972 28.7
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 2.9e-59 234.6 944 30.0
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 9.4e-58 229.6 937 29.5
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 3.6e-57 227.6 1080 27.2
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 6.3e-54 216.9 1094 27.1
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 2.4e-53 214.9 1111 27.1
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 3.1e-53 214.5 1020 27.8
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 7.0e-53 213.4 1058 27.7
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 1.0e-51 209.5 1089 28.9
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 1.7e-51 208.8 1102 27.1
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 2.2e-51 208.4 1044 28.5
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 1.1e-50 206.1 891 27.5
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.9e-50 205.3 1027 28.3
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 2.5e-50 204.9 1055 26.9
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.5e-50 203.8 1016 28.2
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 7.2e-50 203.4 894 27.5
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 9.4e-50 203.0 894 27.4
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 1.6e-49 202.2 891 28.1
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 1.0e-48 199.5 923 27.0
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 1.4e-48 199.1 891 27.9
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 1.4e-48 199.1 1054 27.0
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 1.8e-48 198.7 1053 26.6
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 3.0e-48 198.0 1052 26.8
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 6.7e-48 196.8 889 27.0
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 8.8e-48 196.4 909 27.0
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 8.8e-48 196.4 914 27.5
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 2.6e-47 194.9 840 28.5
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 4.4e-47 194.1 610 32.1
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 2.2e-46 191.8 760 30.0
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 1.4e-45 189.1 408 38.2
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 3.1e-45 188.0 915 26.7
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 4.1e-45 187.6 1027 26.5
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 5.9e-44 183.7 1021 27.0
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.0e-43 183.0 900 27.3
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 1.5e-42 179.1 891 27.3
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.9e-42 178.7 890 27.5
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 3.2e-42 177.9 1063 26.6
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 7.2e-42 176.8 898 27.2
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 9.4e-42 176.4 906 26.9
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 6.8e-40 170.2 1113 25.2
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 1.5e-39 169.1 922 26.0
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 2.7e-36 158.3 914 25.8
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 1.2e-31 142.9 845 26.2
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 2.4e-29 135.2 180 43.3
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 4.1e-29 134.4 843 25.3
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 4.1e-29 134.4 365 34.8
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 4.1e-29 134.4 948 25.1
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 9.2e-29 133.3 403 33.5
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 2.0e-28 132.1 914 23.9
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 5.9e-28 130.6 871 24.7
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 1.2e-25 122.9 187 41.2
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 3.6e-25 121.3 1212 23.0
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 2.9e-22 111.7 1009 23.9
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 6.4e-22 110.5 386 31.9
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 4.1e-21 107.8 956 24.2
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 2.5e-18 98.6 404 28.2
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 2.8e-17 95.1 946 23.4
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 3.1e-16 91.7 802 24.4
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 5.8e-15 87.4 125 40.8
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.4e-13 82.8 853 23.8
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.9e-13 82.4 822 23.4
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 3.5e-12 78.2 192 30.2
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 6.0e-12 77.4 826 23.4
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 1.3e-11 76.3 826 21.7
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.7e-11 75.9 817 22.2
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 3.9e-11 74.7 867 21.7
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 8.6e-11 73.6 884 22.3
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 8.6e-11 73.6 797 24.7
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 1.5e-10 72.8 845 23.0
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.9e-10 72.4 241 29.0
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 2.5e-10 72.0 780 22.8
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 4.3e-10 71.2 797 24.5
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 7.3e-10 70.5 780 23.2
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 1.6e-09 69.3 789 23.6
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 2.8e-09 68.6 838 22.2
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 2.8e-09 68.6 795 22.9
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 8.1e-09 67.0 805 22.5
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 8.1e-09 67.0 753 21.4
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 1.8e-08 65.9 882 21.9
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 3.1e-08 65.1 225 28.0
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 3.1e-08 65.1 775 20.8
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 4.0e-08 64.7 862 22.3
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 5.2e-08 64.3 867 22.3
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 5.2e-08 64.3 838 21.8
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 5.2e-08 64.3 836 22.0
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 6.8e-08 63.9 759 22.0
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 1.5e-07 62.8 277 27.8
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.0e-07 62.4 776 22.0
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.0e-07 62.4 233 28.3
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 2.6e-07 62.0 841 22.4
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 2.6e-07 62.0 831 23.3
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 3.4e-07 61.6 823 22.1
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.4e-07 61.2 128 37.5
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 4.4e-07 61.2 134 35.8
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 7.5e-07 60.5 825 22.1
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 9.8e-07 60.1 270 28.9
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 1.3e-06 59.7 857 22.3
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 1.3e-06 59.7 224 29.5
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 1.3e-06 59.7 62 46.8
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 1.7e-06 59.3 856 22.0
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 1.7e-06 59.3 558 23.1
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 1.7e-06 59.3 218 27.1
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 1.7e-06 59.3 194 26.8
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 2.2e-06 58.9 752 23.9
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 2.9e-06 58.5 203 29.1
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 3.7e-06 58.2 815 21.7
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 4.9e-06 57.8 194 26.3
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 6.4e-06 57.4 286 26.9
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 8.3e-06 57.0 283 24.0
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 8.3e-06 57.0 207 26.6


User provided reference genes

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