Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 0.0e+00 1755.3 891 100.0
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 0.0e+00 1183.7 891 67.2
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 0.0e+00 1176.4 925 66.9
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 0.0e+00 1164.1 927 66.2
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 9.6e-308 1060.1 925 59.6
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 8.2e-291 1003.8 921 57.4
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 8.2e-283 977.2 922 57.8
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 6.9e-282 974.2 913 56.6
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 7.7e-281 970.7 898 55.5
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 3.8e-280 968.4 935 54.0
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 2.8e-275 952.2 897 55.1
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.1e-274 950.3 901 54.5
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.8e-274 949.5 912 54.3
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 4.1e-274 948.3 924 56.1
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 7.7e-273 944.1 907 54.4
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 4.2e-271 938.3 916 53.2
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 1.2e-270 936.8 925 54.7
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 1.6e-270 936.4 923 54.7
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.6e-270 936.4 919 54.2
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 6.1e-270 934.5 909 55.7
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 3.0e-269 932.2 905 53.6
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 2.8e-267 925.6 924 55.3
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 1.1e-266 923.7 928 54.8
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 4.1e-266 921.8 919 53.6
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 5.3e-266 921.4 930 52.7
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 5.9e-265 917.9 922 53.3
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 5.0e-264 914.8 913 54.0
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.1e-263 913.7 912 53.4
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 4.2e-263 911.8 887 54.6
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 8.8e-261 904.0 919 53.1
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 4.4e-260 901.7 924 55.0
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 1.1e-258 897.1 937 52.5
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 4.1e-258 895.2 919 51.5
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 4.5e-257 891.7 904 53.9
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.7e-256 889.8 804 56.5
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 2.9e-256 889.0 934 52.8
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 2.9e-256 889.0 916 54.7
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 5.0e-256 888.3 922 51.5
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 6.5e-256 887.9 919 51.6
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.5e-255 886.7 913 52.7
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 3.2e-255 885.6 933 51.6
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 3.6e-254 882.1 936 51.6
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 1.8e-253 879.8 932 52.7
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 3.0e-253 879.0 919 52.0
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 5.7e-252 874.8 926 52.9
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 9.8e-252 874.0 930 51.6
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 1.7e-251 873.2 952 51.4
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 4.8e-251 871.7 933 52.1
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 6.3e-251 871.3 901 51.9
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 6.3e-251 871.3 914 51.4
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 8.3e-251 870.9 902 52.2
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.8e-250 869.8 908 51.8
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 7.0e-250 867.8 917 51.4
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 3.5e-249 865.5 904 51.8
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 4.5e-249 865.1 902 52.0
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 4.5e-249 865.1 936 51.0
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 6.6e-248 861.3 922 51.2
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 4.7e-246 855.1 892 52.6
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 2.0e-244 849.7 925 50.4
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 7.5e-244 847.8 987 48.3
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 1.1e-239 833.9 943 47.9
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.8e-237 826.6 945 48.3
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 2.3e-237 826.2 881 52.7
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 3.1e-237 825.9 901 50.1
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 2.9e-235 819.3 921 49.9
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 2.9e-235 819.3 921 49.9
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 6.0e-233 811.6 714 58.3
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 1.4e-229 800.4 902 48.4
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 2.0e-228 796.6 897 49.4
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.3e-227 793.9 898 49.2
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 5.4e-226 788.5 904 48.5
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 9.2e-226 787.7 936 48.3
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 3.1e-221 772.7 867 50.7
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 4.0e-221 772.3 906 48.1
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 8.9e-221 771.2 672 58.3
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 5.8e-220 768.5 893 48.6
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 3.7e-219 765.8 1055 43.7
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 2.4e-218 763.1 904 47.2
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 2.7e-217 759.6 884 47.7
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 5.1e-216 755.4 891 47.7
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 8.6e-216 754.6 913 48.4
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 9.9e-212 741.1 1159 40.0
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 1.9e-207 726.9 903 45.6
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 4.3e-207 725.7 935 45.8
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 2.8e-206 723.0 700 54.4
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 1.4e-205 720.7 684 54.7
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 5.3e-205 718.8 714 52.2
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 9.9e-204 714.5 671 54.5
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 8.4e-203 711.4 898 44.7
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.4e-197 694.1 900 43.1
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 1.4e-189 667.5 495 66.7
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 2.0e-188 663.7 643 56.1
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.9e-183 647.1 543 60.8
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 9.0e-181 638.3 900 42.9
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.1e-178 631.3 652 52.3
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.4e-178 630.9 844 44.4
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.4e-172 609.8 894 44.0
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.3e-165 585.9 444 65.3
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.2e-164 584.7 475 60.6
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 4.5e-156 556.2 920 38.5
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 5.5e-146 522.7 411 63.7
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 3.0e-144 516.9 954 34.1
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 8.8e-136 488.8 909 36.5
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 7.0e-125 452.6 519 46.6
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 4.3e-114 416.8 473 49.3
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.5e-111 408.3 924 32.0
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.9e-102 377.5 483 44.5
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 5.4e-101 373.2 473 43.1
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 1.3e-99 368.6 394 51.0
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 5.1e-99 366.7 342 54.4
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 2.6e-95 354.4 316 56.0
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 8.4e-94 349.4 222 73.0
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 8.4e-94 349.4 222 73.0
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-93 349.0 254 66.1
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 1.9e-90 338.2 896 29.0
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 4.4e-87 327.0 502 41.4
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 7.9e-84 316.2 300 55.0
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 3.9e-83 313.9 487 40.7
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-79 302.4 280 58.2
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 4.5e-79 300.4 321 51.1
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 5.6e-74 283.5 474 39.0
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 4.8e-73 280.4 528 32.8
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.2e-69 267.3 423 40.4
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 9.3e-69 266.2 398 39.7
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-65 255.8 439 37.6
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.2e-63 249.2 474 36.9
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.0e-62 243.8 241 55.6
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-60 238.4 600 29.7
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 2.7e-60 238.0 500 32.0
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 5.7e-58 230.3 233 51.5
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.2e-53 214.2 220 47.3
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 4.6e-52 210.7 365 36.2
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 1.0e-51 209.5 475 30.5
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 6.3e-49 200.3 319 39.2
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 6.3e-41 173.7 137 53.3
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.4e-37 159.8 155 54.2
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.4e-37 159.8 155 54.2
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.7e-36 158.3 164 46.3
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.1e-36 157.1 106 69.8
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.7e-34 150.6 258 38.4
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 2.0e-26 125.6 175 40.6
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 1.4e-24 119.4 742 20.9
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 3.1e-24 118.2 206 35.4
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 2.5e-21 108.6 189 39.7
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 5.5e-21 107.5 78 73.1
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 9.5e-21 106.7 169 40.8
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 2.7e-20 105.1 169 40.2
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-19 103.2 145 40.0
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 6.8e-19 100.5 89 46.1
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.4e-16 92.8 76 60.5
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 1.0e-14 86.7 79 46.8
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.7e-14 85.9 75 50.7
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 3.4e-10 71.6 207 32.4
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 7.5e-10 70.5 135 37.8
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.7e-09 68.2 45 66.7
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 1.1e-08 66.6 132 31.8
C06p19910 Brassica napus HOM05D016195 ORTHO05D033444 2.3e-06 58.9 51 47.1


User provided reference genes

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