Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 9.0e-190 666.8 338 100.0
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.0e-180 636.7 338 94.1
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 2.2e-180 635.6 338 93.5
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.9e-179 632.5 339 93.8
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 3.2e-179 631.7 338 93.2
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 7.1e-179 630.6 338 93.2
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.7e-178 628.6 339 93.2
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.0e-177 626.7 338 92.9
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.0e-177 626.7 339 93.2
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 2.3e-177 625.5 335 92.8
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.1e-177 624.4 339 92.0
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 8.7e-177 623.6 331 94.0
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 1.5e-176 622.9 342 91.5
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 1.9e-176 622.5 338 91.7
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.9e-176 622.5 339 93.2
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.9e-176 622.5 334 92.2
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.3e-176 621.7 339 91.2
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 4.3e-176 621.3 339 91.4
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 5.7e-176 620.9 338 90.5
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 5.7e-176 620.9 336 91.4
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 5.7e-176 620.9 380 84.7
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 7.4e-176 620.5 338 90.5
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 7.4e-176 620.5 337 92.0
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 9.6e-176 620.2 334 91.3
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 1.3e-175 619.8 339 91.7
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.3e-175 619.8 339 91.7
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 1.3e-175 619.8 338 90.8
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 2.8e-175 618.6 338 90.8
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 2.8e-175 618.6 339 91.4
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 4.8e-175 617.8 336 91.1
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 8.2e-175 617.1 336 91.1
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 1.1e-174 616.7 336 90.8
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 1.4e-174 616.3 338 90.8
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 1.8e-174 615.9 339 90.3
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 2.4e-174 615.5 338 90.2
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 5.3e-174 614.4 338 89.9
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 6.9e-174 614.0 338 90.5
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 9.0e-174 613.6 338 89.9
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 9.0e-174 613.6 338 89.6
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 1.2e-173 613.2 336 90.5
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 2.0e-173 612.5 338 90.2
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 2.6e-173 612.1 338 90.5
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 3.4e-173 611.7 338 89.3
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 3.4e-173 611.7 338 89.3
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 3.4e-173 611.7 338 89.3
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 4.5e-173 611.3 338 89.6
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.0e-172 610.1 338 88.8
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.3e-172 609.8 334 90.7
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.7e-172 609.4 336 89.9
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.2e-172 609.0 338 88.5
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 2.2e-172 609.0 332 91.0
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 3.8e-172 608.2 338 89.6
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.8e-172 608.2 338 88.5
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 3.8e-172 608.2 336 89.3
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 5.0e-172 607.8 335 89.6
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 2.5e-171 605.5 339 89.4
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.5e-171 605.5 339 89.4
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 3.2e-171 605.1 339 89.7
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 3.2e-171 605.1 338 89.3
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 3.2e-171 605.1 337 89.0
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 3.2e-171 605.1 332 89.8
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 4.2e-171 604.7 338 88.2
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 4.2e-171 604.7 340 89.7
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 7.2e-171 604.0 339 89.1
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 7.2e-171 604.0 338 89.3
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 7.2e-171 604.0 332 89.5
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 9.3e-171 603.6 333 88.9
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 1.2e-170 603.2 331 89.7
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 1.2e-170 603.2 338 88.2
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.7e-170 602.1 339 88.8
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 4.6e-170 601.3 342 89.2
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 7.9e-170 600.5 338 87.6
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.0e-169 600.1 340 88.2
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 2.3e-169 599.0 335 88.1
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.0e-169 598.6 339 88.2
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 6.7e-169 597.4 334 89.2
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 6.7e-169 597.4 321 92.2
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 1.1e-168 596.7 334 88.0
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 1.1e-168 596.7 338 87.6
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.9e-168 595.9 338 85.8
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 2.5e-168 595.5 352 85.8
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 1.8e-166 589.3 309 94.8
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 6.9e-166 587.4 309 94.2
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 6.9e-166 587.4 339 87.0
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 9.0e-166 587.0 329 89.4
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 2.0e-165 585.9 333 85.9
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.3e-164 583.2 338 84.6
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 3.8e-164 581.6 324 90.4
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 2.5e-163 578.9 338 87.6
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 9.4e-163 577.0 335 84.2
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.6e-162 575.1 339 87.0
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 6.1e-162 574.3 336 83.9
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 7.9e-162 573.9 320 89.4
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 1.0e-161 573.5 336 83.9
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.0e-161 573.5 333 84.4
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 1.0e-161 573.5 336 83.9
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 1.4e-161 573.2 336 83.9
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 2.3e-161 572.4 333 84.1
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 3.0e-161 572.0 337 83.4
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 3.0e-161 572.0 333 84.4
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 3.0e-161 572.0 339 83.8
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 3.9e-161 571.6 319 89.3
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 3.9e-161 571.6 336 83.9
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 6.7e-161 570.9 338 82.8
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 6.7e-161 570.9 333 84.1
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 8.8e-161 570.5 336 83.6
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 8.8e-161 570.5 336 83.3
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 8.8e-161 570.5 333 83.8
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.5e-160 569.7 336 83.6
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 1.7e-159 566.2 327 83.8
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 2.8e-159 565.5 336 82.7
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 3.7e-159 565.1 319 86.5
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 4.8e-159 564.7 337 82.2
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 4.8e-159 564.7 336 83.0
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 1.1e-158 563.5 351 80.1
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 1.8e-158 562.8 332 82.5
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 3.8e-156 555.1 341 80.4
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 8.5e-156 553.9 338 83.4
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 9.4e-155 550.4 376 77.4
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 6.1e-154 547.7 332 78.9
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 7.9e-154 547.4 332 78.9
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 4.8e-151 538.1 314 83.8
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 1.1e-150 537.0 337 77.7
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 1.8e-150 536.2 417 69.8
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.1e-147 526.9 332 76.5
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.9e-147 526.2 334 76.0
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 1.4e-142 510.0 363 72.7
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 3.5e-141 505.4 338 79.3
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 2.9e-140 502.3 291 84.9
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 3.2e-139 498.8 262 94.3
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 4.2e-139 498.4 271 90.8
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 5.5e-139 498.0 262 94.7
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 5.5e-139 498.0 262 94.7
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 4.1e-134 481.9 320 73.1
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 1.5e-131 473.4 338 73.7
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.2e-130 470.3 338 73.1
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 8.0e-122 441.0 339 67.0
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 4.9e-119 431.8 238 88.2
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 7.8e-117 424.5 249 82.3
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 8.0e-114 414.5 251 82.9
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.8e-113 413.3 315 62.5
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 6.6e-108 394.8 243 78.2
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.1e-107 394.0 216 89.4
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 1.9e-102 376.7 317 57.4
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 3.9e-100 369.0 330 57.9
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 3.2e-54 216.5 130 82.3
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.4e-44 184.5 163 62.0
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 8.8e-36 155.2 180 54.4
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 6.5e-31 139.0 79 84.8
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.8e-28 131.0 74 83.8
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 1.3e-26 124.8 73 82.2
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 4.8e-26 122.9 73 84.9
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.1e-21 107.5 109 57.8
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 2.0e-16 90.9 51 84.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 2.3e-12 77.4 99 45.5
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 8.9e-12 75.5 42 81.0
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 1.7e-10 71.2 57 64.9
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 1.4e-09 68.2 60 61.7
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 1.4e-09 68.2 60 61.7
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 2.4e-09 67.4 100 44.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.9e-06 57.8 125 35.2


User provided reference genes

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