Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00426 Erythranthe guttata HOM05D005927 ORTHO05D006952 8.8e-66 253.4 126 100.0
SalBow3G2584 Salvia bowleyana HOM05D005927 ORTHO05D006952 5.2e-26 121.3 124 61.3
FAN12G2699 Fragaria x ananassa HOM05D005927 ORTHO05D006952 8.9e-26 120.6 114 59.6
MSTRG.14058 Avicennia marina HOM05D005927 ORTHO05D006952 1.5e-25 119.8 130 52.3
FvH4_4g13190 Fragaria vesca HOM05D005927 ORTHO05D006952 1.5e-25 119.8 114 58.8
FAN17G1175 Fragaria x ananassa HOM05D005927 ORTHO05D006952 2.9e-24 115.5 85 67.1
Gohir.D10G137100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 3.8e-24 115.2 108 55.6
Gorai.011G152200 Gossypium raimondii HOM05D005927 ORTHO05D006952 3.8e-24 115.2 108 55.6
FAN07G0035 Fragaria x ananassa HOM05D005927 ORTHO05D006952 4.9e-24 114.8 114 57.0
Lj4g0008619 Lotus japonicus HOM05D005927 ORTHO05D006952 6.4e-24 114.4 100 56.0
COL.COLO4_05438 Corchorus olitorius HOM05D005927 ORTHO05D006952 4.2e-23 111.7 85 64.7
Gohir.A10G129100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 5.4e-23 111.3 108 53.7
MD04G1018100 Malus domestica HOM05D005927 ORTHO05D006952 7.1e-23 110.9 114 55.3
VMungo0251G3792 Vigna mungo HOM05D005927 ORTHO05D006952 9.3e-23 110.5 105 54.3
Solyc09g092235.1 Solanum lycopersicum HOM05D005927 ORTHO05D006952 2.1e-22 109.4 121 51.2
Thecc.04G193700 Theobroma cacao HOM05D005927 ORTHO05D006952 2.1e-22 109.4 114 52.6
SGA_v2.0_scaffold7G04055 Striga asiatica HOM05D005927 ORTHO05D006952 2.7e-22 109.0 87 62.1
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 3.5e-22 108.6 103 52.4
Medtr8g083150 Medicago truncatula HOM05D005927 ORTHO05D006952 3.5e-22 108.6 112 51.8
Phvul.003G051400 Phaseolus vulgaris HOM05D005927 ORTHO05D006952 3.5e-22 108.6 108 51.9
RcHm_v2.0_Chr4g0413341 Rosa chinensis HOM05D005927 ORTHO05D006952 6.0e-22 107.8 114 56.1
Psat7g076040 Pisum sativum HOM05D005927 ORTHO05D006952 1.0e-21 107.1 110 52.7
TPR.G11873 Trifolium pratense HOM05D005927 ORTHO05D006952 1.0e-21 107.1 116 50.9
Cpa.g.sc157.40 Carica papaya HOM05D005927 ORTHO05D006952 2.3e-21 105.9 90 63.3
Sopen09g035160 Solanum pennellii HOM05D005927 ORTHO05D006952 3.0e-21 105.5 114 51.8
TWI09G0897 Tripterygium wilfordii HOM05D005927 ORTHO05D006952 3.9e-21 105.1 107 53.3
Glyma.05G151400 Glycine max HOM05D005927 ORTHO05D006952 8.7e-21 104.0 106 52.8
Hma1.2p1_1201F.1_g266720 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 8.7e-21 104.0 112 56.2
arahy.Tifrunner.gnm1.ann1.6R0Q3T Arachis hypogaea HOM05D005927 ORTHO05D006952 1.5e-20 103.2 99 54.5
Glyma.08G108200 Glycine max HOM05D005927 ORTHO05D006952 1.9e-20 102.8 102 53.9
CSS0021083 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 7.3e-20 100.9 83 63.9
arahy.Tifrunner.gnm1.ann1.N45PRE Arachis hypogaea HOM05D005927 ORTHO05D006952 9.6e-20 100.5 126 45.2
Oeu056432.1 Olea europaea HOM05D005927 ORTHO05D006952 9.6e-20 100.5 118 50.8
CiPaw.01G115600 Carya illinoinensis HOM05D005927 ORTHO05D006952 1.6e-19 99.8 108 50.9
Manes.05G201886 Manihot esculenta HOM05D005927 ORTHO05D006952 6.2e-19 97.8 90 55.6
Prupe.1G167100 Prunus persica HOM05D005927 ORTHO05D006952 6.2e-19 97.8 113 51.3
Rhsim09G0061200 Rhododendron simsii HOM05D005927 ORTHO05D006952 8.1e-19 97.4 115 53.9
Sabra17G0053700 Salix brachista HOM05D005927 ORTHO05D006952 1.1e-18 97.1 84 60.7
CSS0027848 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.8e-18 96.3 85 60.0
CSS0047969 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.8e-18 96.3 85 61.2
CsaV3_3G015740 Cucumis sativus L. HOM05D005927 ORTHO05D006952 1.8e-18 96.3 90 56.7
MELO3C006773.2 Cucumis melo HOM05D005927 ORTHO05D006952 2.4e-18 95.9 120 48.3
Ciclev10006252m.g Citrus clementina HOM05D005927 ORTHO05D006952 4.0e-18 95.1 108 55.6
PGSC0003DMG400026439 Solanum tuberosum HOM05D005927 ORTHO05D006952 4.0e-18 95.1 67 65.7
Lsat_1_v5_gn_2_47681 Lactuca sativa HOM05D005927 ORTHO05D006952 6.9e-18 94.4 107 46.7
QL06p026881 Quercus lobata HOM05D005927 ORTHO05D006952 6.9e-18 94.4 110 48.2
Sed0010469 Sechium edule HOM05D005927 ORTHO05D006952 6.9e-18 94.4 123 46.3
arahy.Tifrunner.gnm1.ann1.DI9ALX Arachis hypogaea HOM05D005927 ORTHO05D006952 1.2e-17 93.6 115 47.0
CSS0025530 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.2e-17 93.6 119 48.7
CSS0030768 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.2e-17 93.6 85 58.8
Eucgr.H02655 Eucalyptus grandis HOM05D005927 ORTHO05D006952 2.0e-17 92.8 109 47.7
Aqoxy2G03917 Aquilegia oxysepala HOM05D005927 ORTHO05D006952 3.4e-17 92.0 131 42.7
Potri.017G059800 Populus trichocarpa HOM05D005927 ORTHO05D006952 3.4e-17 92.0 108 47.2
CSS0029764 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 4.4e-17 91.7 85 57.6
CANSAT78G2028 Cannabis sativa HOM05D005927 ORTHO05D006952 5.8e-17 91.3 125 44.8
Potri.001G321300 Populus trichocarpa HOM05D005927 ORTHO05D006952 1.3e-16 90.1 113 49.6
CSS0031533 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 6.4e-16 87.8 68 61.8
Lalb_Chr25g0289221 Lupinus albus HOM05D005927 ORTHO05D006952 8.4e-16 87.4 115 45.2
Nitab4.5_0019370g0010 Nicotiana tabacum HOM05D005927 ORTHO05D006952 1.9e-15 86.3 64 68.8
PGR083G0422 Punica granatum HOM05D005927 ORTHO05D006952 1.9e-15 86.3 115 45.2
PGR083G1024 Punica granatum HOM05D005927 ORTHO05D006952 1.9e-15 86.3 115 45.2
THA.LOC104804793 Tarenaya hassleriana HOM05D005927 ORTHO05D006952 1.9e-15 86.3 119 42.9
Cfa008638 Carpinus fangiana HOM05D005927 ORTHO05D006952 7.1e-15 84.3 85 52.9
Hma1.2p1_2624F.1_g325620 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 7.1e-15 84.3 112 45.5
Sp7g11810 Schrenkiella parvula HOM05D005927 ORTHO05D006952 1.2e-14 83.6 123 41.5
Nn1g08158 Nelumbo nucifera HOM05D005927 ORTHO05D006952 1.6e-14 83.2 116 45.7
Ah.13g077890 Amaranthus hybridus HOM05D005927 ORTHO05D006952 2.1e-14 82.8 89 51.7
Hma1.2p1_0349F.1_g131980 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 2.1e-14 82.8 112 45.5
Nn1g08157 Nelumbo nucifera HOM05D005927 ORTHO05D006952 3.5e-14 82.0 108 47.2
Cfa010561 Carpinus fangiana HOM05D003411 ORTHO05D003914 6.0e-14 81.3 81 53.1
ECA238G2825 Erigeron canadensis HOM05D005927 ORTHO05D006952 6.0e-14 81.3 106 43.4
Hma1.2p1_0349F.1_g132010 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 7.9e-14 80.9 110 45.5
Hma1.2p1_2624F.1_g325626 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 7.9e-14 80.9 110 45.5
PGR083G0017 Punica granatum HOM05D005927 ORTHO05D006952 7.9e-14 80.9 115 43.5
A03p43360 Brassica napus HOM05D005927 ORTHO05D006952 1.3e-13 80.1 74 54.1
Ciclev10006262m.g Citrus clementina HOM05D005927 ORTHO05D006952 2.3e-13 79.3 118 44.9
CSS0000209 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 3.9e-13 78.6 108 44.4
AL7G42420 Arabidopsis lyrata HOM05D005927 ORTHO05D006952 6.6e-13 77.8 123 39.8
C04p41800 Brassica napus HOM05D005927 ORTHO05D006952 8.7e-13 77.4 123 39.8
DCAR_026663 Daucus carota HOM05D005927 ORTHO05D006952 8.7e-13 77.4 61 63.9
BcaC02g09370 Brassica carinata HOM05D005927 ORTHO05D006952 1.1e-12 77.0 123 39.8
BolC4t25761H Brassica oleracea HOM05D005927 ORTHO05D006952 1.1e-12 77.0 123 39.8
CSS0010844 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.1e-12 77.0 114 44.7
CARHR220010 Cardamine hirsuta HOM05D005927 ORTHO05D006952 1.1e-12 77.0 114 39.5
AT4G14010 Arabidopsis thaliana HOM05D005927 ORTHO05D006952 1.5e-12 76.6 124 41.1
CSS0015614 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.5e-12 76.6 114 44.7
EL10Ac3g07444 Beta vulgaris HOM05D005927 ORTHO05D006952 1.9e-12 76.3 85 48.2
A04p08120 Brassica napus HOM05D005927 ORTHO05D006952 3.3e-12 75.5 123 38.2
BraA04t16501Z Brassica rapa HOM05D005927 ORTHO05D006952 3.3e-12 75.5 123 38.2
BcaB03g14615 Brassica carinata HOM05D005927 ORTHO05D006952 7.4e-12 74.3 69 53.6
BraA03t13474Z Brassica rapa HOM05D005927 ORTHO05D006952 1.3e-11 73.6 66 54.5
Carub.0007s2841 Capsella rubella HOM05D005927 ORTHO05D006952 1.3e-11 73.6 118 38.1
AUR62020874 Chenopodium quinoa HOM05D005927 ORTHO05D006952 1.3e-11 73.6 80 48.8
Potri.001G321500 Populus trichocarpa HOM05D005927 ORTHO05D006952 2.1e-11 72.8 124 36.3
AUR62018545 Chenopodium quinoa HOM05D005927 ORTHO05D006952 2.8e-11 72.4 73 49.3
Aa31LG8G10360 Aethionema arabicum HOM05D005927 ORTHO05D006952 3.6e-11 72.0 124 39.5
Sed0016502 Sechium edule HOM05D005927 ORTHO05D006952 3.6e-11 72.0 112 43.8
BcaB02g08639 Brassica carinata HOM05D005927 ORTHO05D006952 4.8e-11 71.6 123 37.4
DCAR_001205 Daucus carota HOM05D001053 ORTHO05D008021 8.1e-11 70.9 59 61.0
COL.COLO4_05437 Corchorus olitorius HOM05D005927 ORTHO05D006952 1.4e-10 70.1 112 45.5
unitig_21.g20554 Utricularia gibba HOM05D005927 ORTHO05D006952 1.4e-10 70.1 113 41.6
Thhalv10026595m.g Eutrema salsugineum HOM05D005927 ORTHO05D006952 3.1e-10 68.9 117 35.9
Thecc.04G193600 Theobroma cacao HOM05D005927 ORTHO05D006952 4.0e-10 68.6 117 41.9
Atru.chr4.1553 Acer truncatum HOM05D005927 ORTHO05D006952 5.3e-10 68.2 120 36.7
Duzib151G0391 Durio zibethinus HOM05D005927 ORTHO05D006952 5.3e-10 68.2 80 48.8
CSS0046414 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 6.9e-10 67.8 82 47.6
Sp3g21500 Schrenkiella parvula HOM05D005927 ORTHO05D006952 9.0e-10 67.4 76 51.3
CiPaw.02G063500 Carya illinoinensis HOM05D005927 ORTHO05D006952 2.0e-09 66.2 111 41.4
CiPaw.02G064100 Carya illinoinensis HOM05D005927 ORTHO05D006952 2.0e-09 66.2 108 40.7
Potri.017G059900 Populus trichocarpa HOM05D005927 ORTHO05D006952 2.0e-09 66.2 111 38.7
CiPaw.01G115500 Carya illinoinensis HOM05D005927 ORTHO05D006952 5.8e-09 64.7 118 39.8
Manes.05G202960 Manihot esculenta HOM05D005927 ORTHO05D006952 5.8e-09 64.7 65 47.7
Haze_11664 Corylus avellana HOM05D005927 ORTHO05D006952 9.9e-09 63.9 67 49.3
BraA05t23036Z Brassica rapa HOM05D000668 ORTHO05D000516 1.1e-07 60.5 85 48.2
BcaC05g30117 Brassica carinata HOM05D000668 ORTHO05D000516 1.4e-07 60.1 85 48.2
C05p61740 Brassica napus HOM05D000668 ORTHO05D000516 1.4e-07 60.1 85 48.2
BolC5t34832H Brassica oleracea HOM05D000668 ORTHO05D000516 1.4e-07 60.1 85 48.2
BraA05t19071Z Brassica rapa HOM05D000668 ORTHO05D000516 1.4e-07 60.1 85 48.2
Carub.0003s0478 Capsella rubella HOM05D000668 ORTHO05D000516 1.4e-07 60.1 86 47.7
Prupe.1G167200 Prunus persica HOM05D005927 ORTHO05D006952 1.4e-07 60.1 115 38.3
Duzib268G0459 Durio zibethinus HOM05D005927 ORTHO05D006952 1.9e-07 59.7 114 40.4
BolC3t16435H Brassica oleracea HOM05D000668 ORTHO05D000516 2.4e-07 59.3 85 47.1
BcaC09g47828 Brassica carinata HOM05D000668 ORTHO05D000516 3.2e-07 58.9 85 47.1
Thhalv10021783m.g Eutrema salsugineum HOM05D000668 ORTHO05D000516 4.2e-07 58.5 85 47.1
A03p34150 Brassica napus HOM05D000668 ORTHO05D000516 5.5e-07 58.2 117 39.3
BraA03t12589Z Brassica rapa HOM05D000668 ORTHO05D000516 5.5e-07 58.2 117 39.3
BraSC132t45502Z Brassica rapa HOM05D000668 ORTHO05D000516 5.5e-07 58.2 118 38.1
Sp3g04320 Schrenkiella parvula HOM05D000668 ORTHO05D000516 5.5e-07 58.2 85 45.9
AT3G05490 Arabidopsis thaliana HOM05D000668 ORTHO05D000516 7.1e-07 57.8 80 47.5
BcaB04g19263 Brassica carinata HOM05D000668 ORTHO05D000516 7.1e-07 57.8 85 45.9
BNapus_Darmor_BZH_scaffold_114p00060 Brassica napus HOM05D000668 ORTHO05D000516 7.1e-07 57.8 118 38.1
C03p41540 Brassica napus HOM05D000668 ORTHO05D000516 7.1e-07 57.8 85 45.9
CARHR079880 Cardamine hirsuta HOM05D000668 ORTHO05D000516 7.1e-07 57.8 85 47.1
Gohir.D09G200900 Gossypium hirsutum HOM05D005927 ORTHO05D006952 7.1e-07 57.8 106 35.8
BcaB04g19264 Brassica carinata HOM05D000668 ORTHO05D000516 9.3e-07 57.4 85 45.9
BcaC05g30163 Brassica carinata HOM05D000668 ORTHO05D000516 9.3e-07 57.4 85 45.9
AL6G39280 Arabidopsis lyrata HOM05D000668 ORTHO05D000516 1.2e-06 57.0 87 44.8
Gohir.A06G210700 Gossypium hirsutum HOM05D000668 ORTHO05D000516 2.1e-06 56.2 117 38.5
Peaxi162Scf00549g00436 Petunia axillaris HOM05D005927 ORTHO05D006952 2.1e-06 56.2 70 51.4
AT4G15800 Arabidopsis thaliana HOM05D000668 ORTHO05D000516 2.7e-06 55.8 108 38.0
Gorai.006G224600 Gossypium raimondii HOM05D005927 ORTHO05D006952 2.7e-06 55.8 106 34.9
PSO210G4451 Papaver somniferum HOM05D000668 ORTHO05D000516 2.7e-06 55.8 117 36.8
Peaxi162Scf00286g01046 Petunia axillaris HOM05D005927 ORTHO05D006952 3.5e-06 55.5 70 50.0
Peaxi162Scf00286g01045 Petunia axillaris HOM05D005927 ORTHO05D006952 4.6e-06 55.1 70 50.0
CAN.G665.20 Capsicum annuum HOM05D000668 ORTHO05D000516 6.0e-06 54.7 87 44.8
Duzib133G0092 Durio zibethinus HOM05D000668 ORTHO05D000516 6.0e-06 54.7 123 35.0
Sc16g0008620 Simmondsia chinensis HOM05D000668 ORTHO05D000516 6.0e-06 54.7 82 42.7
Aa31LG5G15910 Aethionema arabicum HOM05D000668 ORTHO05D000516 7.9e-06 54.3 85 44.7
PSO210G3991 Papaver somniferum HOM05D000668 ORTHO05D000516 7.9e-06 54.3 115 37.4
Solyc01g099520.3 Solanum lycopersicum HOM05D000668 ORTHO05D000516 7.9e-06 54.3 87 44.8
Sopen01g043030 Solanum pennellii HOM05D000668 ORTHO05D000516 7.9e-06 54.3 87 44.8
THA.LOC104802797 Tarenaya hassleriana HOM05D000668 ORTHO05D000516 7.9e-06 54.3 85 44.7


User provided reference genes

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