Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 2.6e-91 339.0 203 100.0
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 4.9e-50 201.8 203 58.1
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 1.6e-48 196.8 195 58.5
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 3.5e-48 195.7 195 59.0
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 1.3e-47 193.7 189 59.8
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 4.9e-42 175.3 195 53.8
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 1.3e-39 167.2 197 54.8
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.3e-37 160.6 195 52.8
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 3.7e-37 159.1 177 52.0
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 1.4e-36 157.1 193 50.8
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 1.8e-36 156.8 195 51.8
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 9.0e-36 154.5 200 57.0
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 1.2e-35 154.1 200 57.0
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 2.6e-35 152.9 200 56.5
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 7.6e-35 151.4 177 48.0
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 2.2e-34 149.8 198 46.0
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 2.7e-32 142.9 184 45.7
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.8e-31 140.2 193 56.5
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.9e-30 136.7 158 49.4
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 1.9e-30 136.7 177 46.9
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 1.9e-30 136.7 169 47.3
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 9.6e-30 134.4 175 45.7
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 1.3e-29 134.0 158 48.1
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 1.6e-29 133.7 179 44.7
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 2.8e-29 132.9 175 45.1
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 3.7e-29 132.5 158 48.1
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 4.8e-29 132.1 195 42.6
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 1.1e-28 131.0 200 51.0
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 1.8e-28 130.2 190 49.5
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 3.1e-28 129.4 155 47.7
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 5.3e-28 128.6 178 55.1
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 6.9e-28 128.3 201 52.2
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 9.0e-28 127.9 177 39.5
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 9.0e-28 127.9 177 46.3
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.0e-27 126.7 150 48.7
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.6e-27 126.3 189 39.7
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 2.6e-27 126.3 168 45.8
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 5.9e-27 125.2 226 38.9
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 7.6e-27 124.8 177 43.5
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.0e-26 124.4 178 47.2
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 1.3e-26 124.0 144 49.3
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 1.7e-26 123.6 176 41.5
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 1.7e-26 123.6 158 41.8
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 2.2e-26 123.2 176 42.6
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 2.2e-26 123.2 205 38.0
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 6.5e-26 121.7 155 43.9
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 1.4e-25 120.6 193 43.5
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 1.4e-25 120.6 178 42.1
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 4.2e-25 119.0 202 41.6
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 5.5e-25 118.6 156 60.9
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 9.3e-25 117.9 155 43.9
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.6e-24 117.1 155 46.5
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 2.1e-24 116.7 194 43.3
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 2.7e-24 116.3 178 48.3
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 2.7e-24 116.3 195 40.0
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 3.5e-24 115.9 182 50.0
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 4.6e-24 115.5 193 40.9
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 7.9e-24 114.8 195 47.2
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 7.9e-24 114.8 177 41.8
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 7.9e-24 114.8 155 56.1
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.8e-23 113.6 193 39.9
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 1.8e-23 113.6 182 41.8
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 2.3e-23 113.2 161 50.3
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 3.0e-23 112.8 169 40.8
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 3.9e-23 112.5 155 43.9
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 5.1e-23 112.1 196 41.8
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 8.7e-23 111.3 196 41.3
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 8.7e-23 111.3 196 41.3
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 1.9e-22 110.2 173 39.3
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 2.5e-22 109.8 198 40.9
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 3.3e-22 109.4 173 49.1
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 4.3e-22 109.0 196 39.8
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 4.3e-22 109.0 196 39.8
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 5.7e-22 108.6 186 39.2
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 1.3e-21 107.5 183 42.1
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.3e-21 107.5 183 42.1
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.3e-21 107.5 183 41.0
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 1.3e-21 107.5 194 39.2
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 1.6e-21 107.1 153 55.6
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.6e-21 107.1 153 55.6
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 2.2e-21 106.7 155 45.2
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 2.2e-21 106.7 177 40.7
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 2.2e-21 106.7 192 46.9
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 3.7e-21 105.9 195 35.9
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 3.7e-21 105.9 171 52.0
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 4.8e-21 105.5 155 49.0
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 6.3e-21 105.1 183 41.0
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 6.3e-21 105.1 155 45.8
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 8.2e-21 104.8 191 44.5
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 8.2e-21 104.8 194 41.8
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.1e-20 104.4 164 39.0
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 1.1e-20 104.4 108 58.3
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 4.1e-20 102.4 122 57.4
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 9.0e-20 101.3 195 43.1
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.2e-19 100.9 195 42.6
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.2e-19 100.9 177 36.7
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 1.2e-19 100.9 163 48.5
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 5.9e-19 98.6 198 47.0
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 7.7e-19 98.2 181 49.2
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 1.0e-18 97.8 226 34.1
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 2.2e-18 96.7 204 35.3
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 2.9e-18 96.3 199 41.7
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.4e-17 94.0 158 38.6
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.4e-17 94.0 158 38.6
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 3.2e-17 92.8 158 50.0
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 5.5e-17 92.0 158 38.6
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 9.4e-17 91.3 118 48.3
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.0e-15 87.8 182 45.1
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 3.0e-15 86.3 197 41.1
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 5.1e-15 85.5 225 33.8
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 5.1e-15 85.5 176 37.5
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 1.3e-13 80.9 196 39.3
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 1.7e-13 80.5 178 44.9
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 8.2e-13 78.2 160 28.1
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 4.1e-12 75.9 178 41.0
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 4.1e-12 75.9 175 44.6
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 4.1e-12 75.9 158 46.8
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 5.3e-12 75.5 202 42.6
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 9.1e-12 74.7 195 43.6
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 5.9e-11 72.0 155 41.3
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 5.9e-11 72.0 156 37.8
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 7.7e-11 71.6 94 47.9
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 1.7e-10 70.5 86 47.7
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 6.5e-10 68.6 191 42.4
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 8.5e-10 68.2 115 44.3
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.1e-09 67.8 181 33.7
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.1e-09 67.8 181 33.7
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 2.5e-09 66.6 103 56.3
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 3.2e-09 66.2 106 39.6
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 1.2e-08 64.3 103 64.1
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.2e-08 64.3 195 40.5
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.1e-08 63.5 55 63.6
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 3.6e-08 62.8 103 55.3
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 7.9e-08 61.6 57 59.6
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.8e-07 60.5 57 56.1
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 4.4e-06 55.8 125 48.0
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 5.7e-06 55.5 59 49.2


User provided reference genes

Program Settings