Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 0.0e+00 1838.2 952 100.0
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 0.0e+00 1354.0 963 72.9
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 0.0e+00 1225.7 966 66.9
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 0.0e+00 1128.2 951 64.4
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1099.3 951 61.5
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 3.8e-302 1041.6 969 58.0
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.2e-300 1036.6 980 55.8
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 7.4e-298 1027.3 969 56.1
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 1.3e-297 1026.5 966 56.1
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 7.6e-295 1017.3 988 55.9
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 7.1e-293 1010.7 969 56.3
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 6.7e-291 1004.2 978 54.9
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 9.7e-290 1000.3 979 55.9
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 2.9e-286 988.8 969 55.2
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 8.5e-286 987.3 973 55.6
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 3.2e-285 985.3 971 54.5
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 3.6e-284 981.9 957 56.2
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 1.4e-283 979.9 961 54.7
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 5.7e-282 974.5 962 54.9
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 6.9e-280 967.6 893 58.7
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 2.0e-279 966.1 932 54.8
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 2.2e-278 962.6 972 53.8
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 3.2e-277 958.7 975 54.4
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 1.6e-276 956.4 967 53.7
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 2.3e-275 952.6 977 53.7
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 1.4e-272 943.3 970 52.4
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 7.0e-272 941.0 975 53.4
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 3.5e-271 938.7 968 52.2
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 7.7e-271 937.6 964 52.3
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 7.7e-271 937.6 781 63.0
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 2.2e-270 936.0 973 51.8
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 3.8e-270 935.3 973 51.5
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 5.7e-266 921.4 975 52.1
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 6.3e-265 917.9 961 52.4
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 2.6e-263 912.5 952 51.5
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 3.5e-263 912.1 973 51.8
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 7.2e-261 904.4 957 51.0
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 1.6e-260 903.3 895 53.5
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 1.6e-260 903.3 980 49.7
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 4.0e-259 898.7 978 50.5
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.5e-258 896.7 975 51.1
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 2.0e-258 896.3 918 53.9
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 4.4e-258 895.2 975 51.2
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 6.3e-257 891.3 1012 49.2
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 1.2e-252 877.1 983 50.3
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 1.8e-251 873.2 837 55.8
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 3.0e-251 872.5 978 49.0
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.5e-250 870.2 962 48.2
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 1.3e-249 867.1 965 48.3
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 3.5e-247 859.0 974 48.4
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 1.7e-246 856.7 961 48.2
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 5.0e-246 855.1 972 47.6
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 5.5e-245 851.7 952 49.1
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 3.2e-240 835.9 922 50.7
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 5.0e-238 828.6 958 47.1
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 8.6e-238 827.8 963 46.5
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 4.3e-237 825.5 970 46.2
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 6.8e-235 818.1 964 46.0
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 8.9e-235 817.8 967 47.4
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 2.6e-234 816.2 979 45.3
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 3.7e-233 812.4 978 45.2
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 3.7e-233 812.4 964 46.7
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 6.4e-233 811.6 953 49.0
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 3.0e-230 802.7 865 50.6
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 3.9e-230 802.4 935 49.1
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 1.9e-229 800.0 955 46.1
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 2.5e-229 799.7 968 44.8
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 4.7e-228 795.4 964 44.7
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 6.2e-228 795.0 967 44.9
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 4.0e-227 792.3 965 44.8
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 4.0e-227 792.3 966 44.9
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 6.8e-227 791.6 967 45.4
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 2.0e-226 790.0 928 46.0
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 1.3e-225 787.3 972 45.1
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 2.2e-225 786.6 918 47.6
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 3.2e-224 782.7 972 44.9
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 9.2e-224 781.2 933 45.3
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 2.7e-223 779.6 972 44.7
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 7.8e-223 778.1 974 44.7
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 1.3e-222 777.3 988 43.4
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 6.8e-219 765.0 905 46.2
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 1.2e-218 764.2 910 46.5
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 9.9e-218 761.1 991 43.6
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 3.2e-216 756.1 1012 44.6
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 9.2e-216 754.6 966 43.4
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 2.1e-215 753.4 1018 44.0
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 3.5e-215 752.7 961 43.9
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 4.0e-211 739.2 971 42.1
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 7.1e-208 728.4 931 44.4
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 8.1e-196 688.3 915 42.8
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 1.4e-187 661.0 989 39.2
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 3.8e-185 652.9 952 43.8
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 6.5e-185 652.1 673 52.2
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 2.1e-183 647.1 641 53.8
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 6.7e-182 642.1 842 42.6
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 6.9e-179 632.1 818 43.3
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 6.3e-172 609.0 676 50.1
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 1.6e-167 594.3 1013 37.2
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 6.7e-158 562.4 906 39.3
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 1.6e-138 498.0 927 33.3
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 5.6e-128 463.0 646 41.3
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 1.2e-66 259.2 1008 24.2
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 2.1e-66 258.5 559 32.7
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.1e-56 226.1 332 41.6
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 6.9e-54 216.9 264 43.2
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 2.0e-53 215.3 678 26.7
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 1.3e-39 169.5 133 65.4
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 4.8e-39 167.5 139 57.6
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 1.8e-38 165.6 639 23.8
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 1.0e-25 123.2 638 24.5
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 1.2e-18 99.8 135 40.7
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 1.4e-17 96.3 726 22.6
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 8.3e-15 87.0 114 40.4
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 6.1e-10 70.9 70 54.3
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 3.7e-07 61.6 116 34.5


User provided reference genes

Program Settings