Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 5.2e-71 271.6 208 100.0
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 6.9e-23 111.7 149 69.1
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 8.4e-21 104.8 114 75.4
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 1.4e-20 104.0 124 70.2
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 2.1e-19 100.1 125 80.0
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 4.6e-19 99.0 124 68.5
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 1.3e-18 97.4 107 78.5
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 1.7e-18 97.1 73 54.8
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 6.6e-18 95.1 130 66.2
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 1.9e-17 93.6 135 64.4
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 1.9e-17 93.6 106 77.4
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 1.6e-16 90.5 137 65.0
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 2.1e-16 90.1 137 65.0
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 3.6e-16 89.4 76 59.2
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 6.2e-16 88.6 71 57.7
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 8.1e-16 88.2 100 46.0
ATR0752G075 Amborella trichopoda HOM05D008051 ORTHO05D009905 1.1e-15 87.8 109 72.5
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 1.4e-15 87.4 61 65.6
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 2.4e-15 86.7 78 52.6
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 3.1e-15 86.3 155 59.4
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 5.3e-15 85.5 113 70.8
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 5.3e-15 85.5 70 58.6
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 6.9e-15 85.1 62 59.7
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 6.9e-15 85.1 76 52.6
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 9.0e-15 84.7 145 58.6
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 1.2e-14 84.3 100 42.0
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 1.5e-14 84.0 109 43.1
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 2.6e-14 83.2 74 52.7
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 2.6e-14 83.2 82 47.6
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 4.5e-14 82.4 124 67.7
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 4.5e-14 82.4 133 63.2
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 5.8e-14 82.0 127 66.9
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 7.6e-14 81.6 122 68.9
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 7.6e-14 81.6 114 44.7
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 7.6e-14 81.6 114 42.1
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 9.9e-14 81.3 155 58.1
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 1.7e-13 80.5 90 46.7
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 1.7e-13 80.5 70 52.9
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 3.8e-13 79.3 89 47.2
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 3.8e-13 79.3 89 46.1
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 6.4e-13 78.6 153 58.2
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 1.1e-12 77.8 90 47.8
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 1.1e-12 77.8 78 50.0
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 1.4e-12 77.4 155 57.4
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 1.4e-12 77.4 84 51.2
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 1.9e-12 77.0 86 47.7
THA.LOC104798770 Tarenaya hassleriana HOM05D012777 ORTHO05D009905 3.2e-12 76.3 121 57.0
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 4.2e-12 75.9 81 49.4
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 7.9e-11 71.6 74 51.4
Manes.15G067600 Manihot esculenta HOM05D008051 ORTHO05D009905 1.3e-10 70.9 48 56.2
Lalb_Chr15g0081481 Lupinus albus HOM05D008051 ORTHO05D009905 1.8e-10 70.5 71 50.7
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 5.1e-10 68.9 132 62.1
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 1.1e-09 67.8 47 59.6
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 1.9e-09 67.0 48 60.4
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 4.3e-09 65.9 99 42.4
Cpa.g.sc12.259 Carica papaya HOM05D008051 ORTHO05D009905 5.6e-09 65.5 69 53.6
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 5.6e-09 65.5 97 36.1
Sabra11G0072200 Salix brachista HOM05D008051 ORTHO05D009905 7.4e-09 65.1 72 44.4
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 1.3e-08 64.3 104 38.5
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 1.3e-08 64.3 104 38.5
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 1.3e-08 64.3 99 41.4
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 2.1e-08 63.5 102 38.2
Nn1g07253 Nelumbo nucifera HOM05D008051 ORTHO05D009905 3.7e-08 62.8 80 41.2
TPR.G1175 Trifolium pratense HOM05D008051 ORTHO05D009905 3.7e-08 62.8 73 46.6
Medtr5g093340 Medicago truncatula HOM05D008051 ORTHO05D009905 6.2e-08 62.0 71 43.7
Glyma.14G021900 Glycine max HOM05D008051 ORTHO05D009905 8.1e-08 61.6 104 40.4
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 1.1e-07 61.2 100 38.0
TPR.G24073 Trifolium pratense HOM05D008051 ORTHO05D009905 1.4e-07 60.8 100 37.0
Lalb_Chr17g0348611 Lupinus albus HOM05D008051 ORTHO05D009905 1.8e-07 60.5 46 63.0
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 1.8e-07 60.5 98 37.8
Phvul.008G269500 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 4.0e-07 59.3 49 53.1
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 5.3e-07 58.9 59 45.8
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 5.3e-07 58.9 98 39.8
Medtr5g093370 Medicago truncatula HOM05D008051 ORTHO05D009905 2.0e-06 57.0 101 35.6


User provided reference genes

Program Settings