Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 0.0e+00 1417.9 717 100.0
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 0.0e+00 1117.4 716 79.2
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 0.0e+00 1083.2 719 76.5
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.7e-310 1068.9 722 76.0
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.9e-306 1055.4 721 75.5
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.4e-304 1049.3 698 77.5
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.8e-304 1048.9 716 75.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 8.9e-304 1046.6 722 74.5
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 6.3e-302 1040.4 722 74.4
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 8.6e-299 1030.0 711 75.0
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 8.3e-294 1013.4 725 71.9
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-293 1013.1 708 73.4
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 3.5e-292 1008.1 717 71.7
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 2.3e-291 1005.4 701 72.8
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.1e-290 1003.0 704 74.6
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 5.6e-290 1000.7 712 73.6
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 1.1e-288 996.5 717 70.3
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 3.1e-288 995.0 719 70.7
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 3.4e-287 991.5 720 72.1
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 7.5e-287 990.3 710 72.4
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.7e-286 989.2 725 71.4
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 3.7e-286 988.0 711 71.9
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 9.2e-285 983.4 749 69.0
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 4.6e-284 981.1 716 70.1
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.7e-283 979.2 721 70.9
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 3.0e-283 978.4 718 70.1
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 3.9e-283 978.0 703 71.1
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.9e-282 975.7 712 71.1
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 1.9e-282 975.7 734 69.6
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.2e-281 973.0 720 71.1
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 1.4e-280 969.5 714 69.0
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 1.2e-279 966.5 709 70.2
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.4e-279 964.5 718 70.5
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 5.8e-279 964.1 710 69.7
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 6.4e-278 960.7 707 69.7
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.4e-277 959.5 708 71.5
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.9e-277 959.1 715 69.8
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 4.1e-277 958.0 716 70.9
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 4.1e-277 958.0 782 65.3
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 9.2e-277 956.8 703 71.4
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.2e-276 956.4 709 69.7
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.6e-276 956.1 708 69.5
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.1e-276 955.7 707 70.2
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.7e-276 955.3 709 69.4
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.7e-275 952.6 706 70.0
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.1e-274 949.9 705 69.4
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 5.6e-274 947.6 716 68.7
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.1e-272 943.3 698 70.2
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.3e-270 936.4 703 69.7
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 6.4e-270 934.1 704 69.5
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.1e-269 933.3 683 71.4
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.4e-269 932.2 717 67.9
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.7e-268 928.7 706 68.1
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 7.8e-268 927.2 718 67.0
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.0e-267 926.8 717 67.5
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.0e-267 926.8 717 67.5
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 5.1e-267 924.5 698 69.3
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 6.6e-267 924.1 714 67.4
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.9e-266 922.5 703 66.3
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 6.2e-265 917.5 702 67.2
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.8e-264 916.0 714 67.1
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 2.4e-264 915.6 713 66.1
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.2e-263 913.3 719 67.5
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 2.0e-263 912.5 702 67.4
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 2.6e-263 912.1 726 66.7
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.3e-262 909.8 707 67.3
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 3.2e-261 905.2 724 66.3
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 1.6e-260 902.9 709 66.6
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 3.5e-260 901.7 701 67.3
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 4.6e-260 901.4 709 66.4
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.0e-259 900.2 701 68.2
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.7e-259 899.4 723 65.8
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 2.3e-259 899.0 715 66.3
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.3e-259 899.0 724 64.5
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 5.1e-259 897.9 703 66.7
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.9e-258 896.0 702 66.1
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 2.5e-258 895.6 722 64.7
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 3.3e-258 895.2 703 67.0
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.3e-257 893.3 713 65.4
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 2.8e-257 892.1 707 66.9
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.8e-257 892.1 703 66.4
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 3.6e-257 891.7 724 64.9
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 4.8e-257 891.3 636 70.9
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 6.2e-257 891.0 704 65.2
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 6.9e-256 887.5 718 64.6
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 3.4e-255 885.2 727 64.6
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 4.5e-255 884.8 718 63.4
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 4.5e-255 884.8 716 64.9
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 5.8e-255 884.4 727 64.5
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 9.9e-255 883.6 726 64.3
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 2.4e-253 879.0 682 66.7
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 9.3e-253 877.1 725 64.3
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 3.9e-251 871.7 710 64.9
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 8.7e-251 870.5 720 64.9
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 1.1e-250 870.2 712 64.0
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 2.5e-250 869.0 709 63.9
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 5.6e-250 867.8 688 65.4
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 4.8e-249 864.8 679 68.3
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 2.0e-247 859.4 642 69.8
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 4.5e-247 858.2 723 64.0
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 2.4e-245 852.4 711 62.4
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 3.2e-245 852.0 689 64.9
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 9.3e-245 850.5 716 63.7
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.8e-243 846.3 656 68.4
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 3.4e-239 832.0 738 61.2
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.9e-238 828.9 699 62.7
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 6.7e-235 817.8 715 59.9
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.0e-231 806.2 701 59.9
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.7e-230 803.1 719 59.8
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 2.5e-229 799.3 710 59.4
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 8.8e-227 790.8 640 67.0
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 5.7e-226 788.1 727 60.8
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.8e-224 783.1 731 60.6
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.4e-219 766.9 700 60.1
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 3.1e-216 755.7 546 71.4
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 3.1e-216 755.7 708 57.8
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 3.4e-215 752.3 653 64.3
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 5.3e-208 728.4 722 56.1
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.0e-206 724.2 716 54.3
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.0e-206 721.8 559 69.6
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 9.4e-205 717.6 725 56.3
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 6.7e-203 711.4 616 63.6
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.3e-201 707.2 605 64.3
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 2.9e-198 696.0 702 56.0
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.8e-195 684.9 559 66.9
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 5.7e-194 681.8 573 63.0
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.7e-185 653.7 712 51.7
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 7.8e-183 644.8 656 54.9
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.6e-180 637.1 495 66.9
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.6e-159 567.4 708 46.2
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.6e-140 504.2 897 38.0
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.6e-140 503.1 350 72.9
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.8e-140 502.7 582 50.7
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 1.4e-115 421.4 434 56.0
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.1e-111 407.5 271 77.1
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.4e-106 390.2 255 77.6
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 9.4e-88 328.9 505 41.0
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 7.5e-85 319.3 367 48.8
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 4.5e-82 310.1 323 54.2
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 2.1e-55 221.5 544 34.0
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 3.4e-53 214.2 289 47.1
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.6e-49 199.5 185 57.8
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.8e-46 191.8 127 72.4
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.2e-39 169.1 137 66.4
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 4.7e-39 167.2 143 61.5
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 6.8e-38 163.3 322 37.6
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 1.3e-33 149.1 363 33.9
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 1.6e-31 142.1 128 58.6
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 3.6e-31 141.0 159 49.7
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.5e-29 135.6 122 59.8
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 3.5e-26 124.4 177 45.2
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.5e-24 119.0 320 32.5
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 6.4e-20 103.6 121 51.2
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.4e-14 85.9 85 50.6
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 3.8e-12 77.8 88 45.5
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 4.9e-12 77.4 45 75.6
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-11 75.9 57 56.1
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-11 75.9 57 56.1
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.9e-11 75.5 48 75.0
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 1.9e-11 75.5 58 65.5
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.2e-10 72.8 66 51.5
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 6.7e-09 67.0 37 83.8


User provided reference genes

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