Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 6.0e-95 350.9 187 100.0
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 9.0e-83 310.5 206 82.0
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 2.0e-82 309.3 186 86.6
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 2.0e-82 309.3 182 87.4
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 2.6e-82 308.9 187 88.2
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.0e-81 307.0 177 88.1
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 1.7e-81 306.2 193 84.5
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 2.2e-81 305.8 186 88.7
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 2.2e-81 305.8 176 88.6
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.2e-81 305.8 181 87.3
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 3.8e-81 305.1 186 85.5
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 8.5e-81 303.9 180 87.2
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.1e-80 303.5 183 84.7
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 1.1e-80 303.5 186 83.9
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 2.5e-80 302.4 173 89.6
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 3.2e-80 302.0 181 84.5
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 3.2e-80 302.0 178 87.1
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 3.2e-80 302.0 186 83.9
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 5.5e-80 301.2 177 87.6
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 9.4e-80 300.4 186 84.4
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 1.2e-79 300.1 181 85.1
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.6e-79 299.7 179 84.4
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.6e-79 299.7 186 82.8
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 3.6e-79 298.5 185 83.2
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 3.6e-79 298.5 183 84.2
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 3.6e-79 298.5 184 82.6
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 4.6e-79 298.1 183 83.6
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 6.1e-79 297.7 181 85.1
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 6.1e-79 297.7 183 84.2
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 7.9e-79 297.4 183 83.1
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.4e-78 296.6 186 83.3
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.4e-78 296.6 175 86.9
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.3e-78 295.8 178 84.3
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 2.3e-78 295.8 177 84.7
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.3e-78 295.8 179 83.8
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 2.3e-78 295.8 179 83.8
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 3.0e-78 295.4 179 85.5
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 3.9e-78 295.0 183 83.1
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 5.1e-78 294.7 176 84.7
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.1e-77 293.5 172 87.2
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 1.5e-77 293.1 181 82.9
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.5e-77 293.1 178 84.8
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.5e-77 293.1 178 84.8
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 2.0e-77 292.7 179 82.1
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-77 292.7 181 84.0
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 2.5e-77 292.4 182 83.0
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 2.5e-77 292.4 178 84.8
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 3.3e-77 292.0 183 82.0
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 3.3e-77 292.0 177 84.2
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 3.3e-77 292.0 189 81.5
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.3e-77 291.6 172 87.2
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 5.7e-77 291.2 183 82.5
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 7.4e-77 290.8 191 80.1
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 7.4e-77 290.8 182 83.0
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 9.7e-77 290.4 180 83.9
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 9.7e-77 290.4 179 83.2
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.2e-76 289.3 186 80.6
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 2.2e-76 289.3 183 79.8
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 2.8e-76 288.9 180 83.3
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 4.8e-76 288.1 181 81.8
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.8e-76 288.1 186 80.6
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.8e-76 288.1 186 80.6
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 4.8e-76 288.1 173 84.4
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 4.8e-76 288.1 183 80.9
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 4.8e-76 288.1 183 79.8
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 6.3e-76 287.7 182 81.3
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 6.3e-76 287.7 187 80.7
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 8.2e-76 287.3 175 85.1
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 8.2e-76 287.3 183 82.0
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 8.2e-76 287.3 188 79.8
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.1e-75 287.0 181 80.7
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.8e-75 286.2 184 79.3
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.4e-75 285.8 194 76.8
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 3.1e-75 285.4 174 82.8
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 3.1e-75 285.4 181 80.7
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 4.1e-75 285.0 188 79.8
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 4.1e-75 285.0 182 80.2
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 5.3e-75 284.6 192 78.1
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 6.9e-75 284.3 176 81.8
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.2e-74 283.5 188 80.9
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.5e-74 283.1 176 81.2
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 1.5e-74 283.1 184 77.2
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.5e-74 283.1 192 78.1
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 2.0e-74 282.7 183 80.3
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 2.0e-74 282.7 182 79.7
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.6e-74 282.3 182 79.7
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 3.4e-74 282.0 181 79.0
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 4.5e-74 281.6 171 83.0
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 4.5e-74 281.6 171 83.0
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 4.5e-74 281.6 180 81.7
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 5.9e-74 281.2 182 78.6
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.0e-73 280.4 221 70.6
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 2.2e-73 279.3 182 79.7
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 5.0e-73 278.1 178 80.3
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 6.5e-73 277.7 171 81.3
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 8.5e-73 277.3 171 81.3
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 8.5e-73 277.3 171 81.3
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 8.5e-73 277.3 191 77.0
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.1e-72 276.9 173 80.9
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.1e-72 276.9 173 80.9
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.1e-72 276.9 173 80.9
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.1e-72 276.9 173 80.9
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 1.9e-72 276.2 171 81.3
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.2e-72 275.4 176 77.8
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 3.2e-72 275.4 160 90.0
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 9.4e-72 273.9 224 68.3
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.6e-71 273.1 155 91.0
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.4e-70 270.0 233 65.7
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 9.7e-69 263.8 177 78.0
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 2.8e-68 262.3 232 65.5
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 4.1e-67 258.5 181 76.8
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 6.5e-65 251.1 159 80.5
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 3.2e-64 248.8 231 59.7
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 5.5e-64 248.1 175 70.9
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 4.7e-63 245.0 184 70.1
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 8.0e-63 244.2 183 72.1
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 5.2e-62 241.5 137 88.3
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 3.3e-61 238.8 131 92.4
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 5.7e-61 238.0 175 69.7
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.8e-60 235.7 181 71.3
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.7e-60 235.3 131 90.8
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 1.4e-59 233.4 136 89.7
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 4.1e-59 231.9 137 86.1
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 2.1e-55 219.5 175 63.4
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 8.0e-55 217.6 176 60.8
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 2.0e-53 213.0 130 83.8
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.7e-53 211.5 123 87.0
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.9e-49 199.1 198 61.1
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 6.5e-49 198.0 135 74.8
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.5e-48 196.8 110 90.0
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.2e-47 193.7 133 75.2
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.2e-47 193.7 124 78.2
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.3e-46 189.5 122 81.1
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.6e-42 176.8 109 82.6
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.7e-42 174.5 102 83.3
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.3e-41 172.9 117 77.8
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.6e-39 166.8 101 82.2
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-36 156.8 93 82.8
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 2.7e-34 149.4 171 45.0
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.3e-33 146.4 98 80.6
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.5e-32 142.9 82 86.6
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 3.3e-32 142.5 102 71.6
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 2.8e-31 139.4 167 43.1
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 8.0e-31 137.9 85 84.7
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.8e-30 136.7 85 84.7
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.0e-30 135.6 102 71.6
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 2.6e-29 132.9 172 41.3
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 9.8e-29 131.0 185 37.3
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.9e-28 129.4 104 68.3
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 3.5e-26 122.5 75 80.0
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 6.0e-26 121.7 88 65.9
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 5.0e-25 118.6 101 65.3
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 7.5e-21 104.8 64 81.2
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.6e-17 91.3 56 80.4
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.8e-14 83.6 47 87.2
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.6e-13 79.7 111 48.6
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.6e-13 78.2 111 47.7
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.6e-13 78.2 111 47.7
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.9e-12 76.3 111 46.8
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.7e-12 75.9 111 46.8
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 3.9e-09 65.9 115 40.9
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 1.5e-08 63.9 60 60.0
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.3e-08 62.8 36 83.3


User provided reference genes

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