Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M02035 Erythranthe guttata HOM05D002102 ORTHO05D004119 5.7e-172 607.8 387 100.0
SGA_v2.0_scaffold423G51452 Striga asiatica HOM05D002102 ORTHO05D004119 1.4e-50 204.5 386 43.8
Oeu025642.1 Olea europaea HOM05D002102 ORTHO05D004119 1.7e-46 191.0 346 40.5
TAR629G0218 Trochodendron aralioides HOM05D002102 ORTHO05D004119 4.8e-46 189.5 396 38.9
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 1.2e-44 184.9 397 38.3
HanXRQChr02g0036451 Helianthus annuus HOM05D002102 ORTHO05D004119 5.9e-44 182.6 393 35.6
PGSC0003DMG400013657 Solanum tuberosum HOM05D002102 ORTHO05D004119 5.9e-44 182.6 392 38.0
Sopen02g026810 Solanum pennellii HOM05D002102 ORTHO05D004119 2.2e-43 180.6 393 38.9
Nitab4.5_0007687g0030 Nicotiana tabacum HOM05D002102 ORTHO05D004119 5.0e-43 179.5 397 38.0
Solyc02g082150.1 Solanum lycopersicum HOM05D002102 ORTHO05D004119 6.5e-43 179.1 393 38.7
CAN.G809.14 Capsicum annuum HOM05D002102 ORTHO05D004119 8.5e-43 178.7 378 38.1
Lsat_1_v5_gn_9_100101 Lactuca sativa HOM05D002102 ORTHO05D004119 1.1e-42 178.3 394 36.8
Cc09_g04630 Coffea canephora HOM05D002102 ORTHO05D004119 1.4e-42 177.9 401 36.9
PGSC0003DMG400011261 Solanum tuberosum HOM05D002102 ORTHO05D004119 1.9e-42 177.6 376 37.5
Hma1.2p1_0166F.1_g073520 Hydrangea macrophylla HOM05D002102 ORTHO05D004119 1.6e-41 174.5 386 40.4
Nitab4.5_0012748g0010 Nicotiana tabacum HOM05D002102 ORTHO05D004119 3.6e-41 173.3 361 37.7
Prupe.4G120700 Prunus persica HOM05D002102 ORTHO05D004119 3.6e-41 173.3 396 37.6
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 8.0e-41 172.2 391 43.2
QL11p010813 Quercus lobata HOM05D002102 ORTHO05D004119 1.0e-40 171.8 394 37.3
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 3.9e-40 169.9 408 35.0
Sopen10g001180 Solanum pennellii HOM05D002102 ORTHO05D004119 6.7e-40 169.1 383 36.3
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 1.1e-39 168.3 388 35.8
Peaxi162Scf00313g00049 Petunia axillaris HOM05D002102 ORTHO05D004119 1.5e-39 167.9 344 37.8
Aqoxy1G01356 Aquilegia oxysepala HOM05D002102 ORTHO05D004119 2.0e-39 167.5 394 34.8
Solyc10g005190.1 Solanum lycopersicum HOM05D002102 ORTHO05D004119 7.4e-39 165.6 382 35.1
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 9.7e-39 165.2 357 37.0
Eucgr.E04329 Eucalyptus grandis HOM05D002102 ORTHO05D004119 2.2e-38 164.1 356 37.9
Potri.001G074300 Populus trichocarpa HOM05D002102 ORTHO05D004119 2.2e-38 164.1 393 35.9
MBI02_g17885_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D004119 2.8e-38 163.7 401 35.9
COL.COLO4_03689 Corchorus olitorius HOM05D002102 ORTHO05D004119 3.7e-38 163.3 406 34.0
Sabra01G0052600 Salix brachista HOM05D002102 ORTHO05D004119 8.2e-38 162.2 393 35.1
Cfa001163 Carpinus fangiana HOM05D002102 ORTHO05D004119 1.4e-37 161.4 393 36.4
TWI63G0772 Tripterygium wilfordii HOM05D002102 ORTHO05D004119 3.1e-37 160.2 395 35.9
ECA246G4308 Erigeron canadensis HOM05D002102 ORTHO05D004119 7.0e-37 159.1 345 36.8
CiPaw.09G140500 Carya illinoinensis HOM05D002102 ORTHO05D004119 9.1e-37 158.7 392 35.2
Manes.16G059800 Manihot esculenta HOM05D002102 ORTHO05D004119 3.5e-36 156.8 410 34.1
TWI15G0700 Tripterygium wilfordii HOM05D002102 ORTHO05D004119 1.3e-35 154.8 400 34.8
Thecc.01G106700 Theobroma cacao HOM05D002102 ORTHO05D004119 1.7e-35 154.5 397 35.5
Lsat_1_v5_gn_2_59800 Lactuca sativa HOM05D002102 ORTHO05D004119 2.2e-35 154.1 384 36.2
Cpa.g.sc1291.1 Carica papaya HOM05D002102 ORTHO05D004119 5.0e-35 152.9 386 35.2
PGR042G1552 Punica granatum HOM05D002102 ORTHO05D004119 1.9e-34 151.0 350 35.4
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 4.2e-34 149.8 399 36.6
MELO3C002390.2 Cucumis melo HOM05D002102 ORTHO05D004119 1.2e-33 148.3 403 34.2
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.2e-33 148.3 399 36.6
FvH4_3g13340 Fragaria vesca HOM05D002102 ORTHO05D004119 1.6e-33 147.9 399 36.3
MD10G1224500 Malus domestica HOM05D002102 ORTHO05D004119 1.6e-33 147.9 391 35.5
ECA238G3437 Erigeron canadensis HOM05D002102 ORTHO05D004119 2.7e-33 147.1 196 51.5
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.7e-33 147.1 400 36.0
Gorai.003G045000 Gossypium raimondii HOM05D002102 ORTHO05D004119 3.6e-33 146.7 385 34.5
CANSAT35G1778 Cannabis sativa HOM05D002102 ORTHO05D004119 4.7e-33 146.4 400 37.8
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.0e-32 145.2 398 35.9
RcHm_v2.0_Chr5g0021811 Rosa chinensis HOM05D002102 ORTHO05D004119 1.0e-32 145.2 395 36.5
AL7G33650 Arabidopsis lyrata HOM05D002102 ORTHO05D004119 1.8e-32 144.4 414 38.9
CARHR227010 Cardamine hirsuta HOM05D002102 ORTHO05D004119 1.8e-32 144.4 409 36.7
THA.LOC104811927 Tarenaya hassleriana HOM05D002102 ORTHO05D004119 1.8e-32 144.4 404 32.7
Ciclev10015737m.g Citrus clementina HOM05D002102 ORTHO05D004119 3.0e-32 143.7 391 32.7
CsaV3_1G009970 Cucumis sativus L. HOM05D002102 ORTHO05D004119 5.2e-32 142.9 400 33.5
Gohir.A02G132600 Gossypium hirsutum HOM05D002102 ORTHO05D004119 5.2e-32 142.9 386 34.5
Potri.003G156700 Populus trichocarpa HOM05D002102 ORTHO05D004119 5.2e-32 142.9 392 32.7
Gohir.D03G044000 Gossypium hirsutum HOM05D002102 ORTHO05D004119 8.8e-32 142.1 386 33.9
AT4G20190 Arabidopsis thaliana HOM05D002102 ORTHO05D004119 1.2e-31 141.7 422 34.8
Sed0008960 Sechium edule HOM05D002102 ORTHO05D004119 2.6e-31 140.6 405 31.9
VMungo0251G3352 Vigna mungo HOM05D002102 ORTHO05D004119 2.6e-31 140.6 337 34.1
Carub.0007s2095 Capsella rubella HOM05D002102 ORTHO05D004119 4.4e-31 139.8 414 40.3
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 4.4e-31 139.8 363 37.5
Phvul.003G275300 Phaseolus vulgaris HOM05D002102 ORTHO05D004119 4.4e-31 139.8 337 33.8
HanXRQChr14g0439021 Helianthus annuus HOM05D002102 ORTHO05D004119 9.7e-31 138.7 196 49.0
PSO675G5300 Papaver somniferum HOM05D002102 ORTHO05D004119 9.7e-31 138.7 372 31.7
ClCG03G004080 Citrullus lanatus HOM05D002102 ORTHO05D004119 1.3e-30 138.3 397 33.0
Glyma.16G094200 Glycine max HOM05D002102 ORTHO05D004119 1.3e-30 138.3 299 36.8
Lalb_Chr20g0114391 Lupinus albus HOM05D002102 ORTHO05D004119 1.3e-30 138.3 350 34.0
Actinidia34699 Actinidia chinensis HOM05D002102 ORTHO05D004119 1.7e-30 137.9 349 33.5
Thhalv10027261m.g Eutrema salsugineum HOM05D002102 ORTHO05D004119 4.8e-30 136.3 411 34.8
Aa31LG6G2610 Aethionema arabicum HOM05D002102 ORTHO05D004119 6.3e-30 136.0 403 33.0
BcaB03g11661 Brassica carinata HOM05D002102 ORTHO05D004119 1.1e-29 135.2 412 35.0
A08p14680 Brassica napus HOM05D002102 ORTHO05D004119 1.1e-29 135.2 405 33.8
BraA08t33455Z Brassica rapa HOM05D002102 ORTHO05D004119 1.1e-29 135.2 405 33.8
PSO541G6086 Papaver somniferum HOM05D002102 ORTHO05D004119 1.8e-29 134.4 367 32.2
Haze_05189 Corylus avellana HOM05D002102 ORTHO05D004119 2.4e-29 134.0 197 43.7
Haze_05200 Corylus avellana HOM05D002102 ORTHO05D004119 2.4e-29 134.0 197 43.7
THA.LOC104813354 Tarenaya hassleriana HOM05D002102 ORTHO05D004119 4.1e-29 133.3 409 34.7
BcaC01g00659 Brassica carinata HOM05D002102 ORTHO05D004119 1.2e-28 131.7 405 33.8
A01p11930 Brassica napus HOM05D002102 ORTHO05D004119 1.2e-28 131.7 410 36.8
BraA01t01135Z Brassica rapa HOM05D002102 ORTHO05D004119 1.2e-28 131.7 410 36.8
Sp7g18610 Schrenkiella parvula HOM05D002102 ORTHO05D004119 1.2e-28 131.7 404 38.6
C03p82830 Brassica napus HOM05D002102 ORTHO05D004119 1.6e-28 131.3 405 33.3
BolC3t20564H Brassica oleracea HOM05D002102 ORTHO05D004119 1.6e-28 131.3 405 33.3
BcaC09g51330 Brassica carinata HOM05D002102 ORTHO05D004119 4.5e-28 129.8 418 38.3
BolC1t01381H Brassica oleracea HOM05D002102 ORTHO05D004119 4.5e-28 129.8 418 38.3
BcaNung03712 Brassica carinata HOM05D002102 ORTHO05D004119 1.3e-27 128.3 410 34.9
TPR.G19830 Trifolium pratense HOM05D002102 ORTHO05D004119 1.3e-27 128.3 386 32.6
C01p14170 Brassica napus HOM05D002102 ORTHO05D004119 1.7e-27 127.9 418 38.3
Sc17g0004360 Simmondsia chinensis HOM05D002102 ORTHO05D004119 2.2e-27 127.5 390 30.8
BcaNung03713 Brassica carinata HOM05D002102 ORTHO05D004119 6.5e-27 125.9 409 33.5
Lj4g0021437 Lotus japonicus HOM05D002102 ORTHO05D004119 6.5e-27 125.9 340 32.9
Cfa001162 Carpinus fangiana HOM05D002102 ORTHO05D004119 1.5e-26 124.8 194 42.8
Medtr8g070690 Medicago truncatula HOM05D002102 ORTHO05D004119 2.5e-26 124.0 392 31.6
CARHR129060 Cardamine hirsuta HOM05D002102 ORTHO05D004119 3.2e-26 123.6 202 42.1
Psat0s2609g0080 Pisum sativum HOM05D002102 ORTHO05D004119 7.2e-26 122.5 340 32.1
Glyma.15G155100 Glycine max HOM05D002102 ORTHO05D004119 2.7e-25 120.6 383 32.9
BcaB06g28826 Brassica carinata HOM05D002102 ORTHO05D004119 4.7e-25 119.8 208 41.3
BcaC02g07749 Brassica carinata HOM05D002102 ORTHO05D004119 4.7e-25 119.8 208 41.3
Glyma.09G047700 Glycine max HOM05D002102 ORTHO05D004119 4.7e-25 119.8 385 32.2
Thhalv10008294m.g Eutrema salsugineum HOM05D002102 ORTHO05D004119 1.4e-24 118.2 212 41.5
BolC4t27882H Brassica oleracea HOM05D002102 ORTHO05D004119 1.8e-24 117.9 208 40.9
Ca_02410_v3 Cicer arietinum L. HOM05D002102 ORTHO05D004119 1.8e-24 117.9 390 31.0
Aa31LG6G12270 Aethionema arabicum HOM05D002102 ORTHO05D004119 2.3e-24 117.5 208 39.4
C04p64060 Brassica napus HOM05D002102 ORTHO05D004119 2.3e-24 117.5 208 40.9
Ca_22533_v3 Cicer arietinum L. HOM05D002102 ORTHO05D004119 2.3e-24 117.5 201 43.8
Lalb_Chr18g0051891 Lupinus albus HOM05D002102 ORTHO05D004119 3.0e-24 117.1 395 30.4
Aa31LG10G6430 Aethionema arabicum HOM05D002102 ORTHO05D004119 6.8e-24 115.9 204 38.2
AT1G30850 Arabidopsis thaliana HOM05D002102 ORTHO05D004119 6.8e-24 115.9 211 41.7
Carub.0001s2919 Capsella rubella HOM05D002102 ORTHO05D004119 8.8e-24 115.5 211 42.2
Sp1g26750 Schrenkiella parvula HOM05D002102 ORTHO05D004119 8.8e-24 115.5 212 41.0
A04p26640 Brassica napus HOM05D002102 ORTHO05D004119 1.2e-23 115.2 208 40.9
VMungo1309G0754 Vigna mungo HOM05D002102 ORTHO05D004119 1.2e-23 115.2 382 29.8
BraA04t18169Z Brassica rapa HOM05D002102 ORTHO05D004119 1.5e-23 114.8 208 40.9
BcaB02g09499 Brassica carinata HOM05D002102 ORTHO05D004119 2.6e-23 114.0 210 40.0
Thhalv10017016m.g Eutrema salsugineum HOM05D002102 ORTHO05D004119 2.6e-23 114.0 203 39.4
HPP92_015983 Vanilla planifolia HOM05D002102 ORTHO05D004119 3.4e-23 113.6 291 35.1
BraA09t39060Z Brassica rapa HOM05D002102 ORTHO05D004119 4.4e-23 113.2 210 40.5
A09p35310 Brassica napus HOM05D002102 ORTHO05D004119 7.5e-23 112.5 210 40.5
AL1G45140 Arabidopsis lyrata HOM05D002102 ORTHO05D004119 2.2e-22 110.9 211 40.3
BcaB06g28821 Brassica carinata HOM05D002102 ORTHO05D004119 2.2e-22 110.9 209 38.3
BcaC05g27123 Brassica carinata HOM05D002102 ORTHO05D004119 2.2e-22 110.9 210 40.0
C05p30080 Brassica napus HOM05D002102 ORTHO05D004119 2.2e-22 110.9 210 40.0
BolC5t31744H Brassica oleracea HOM05D002102 ORTHO05D004119 2.2e-22 110.9 210 40.0
CARHR178240 Cardamine hirsuta HOM05D002102 ORTHO05D004119 2.8e-22 110.5 223 38.1
Medtr2g437600 Medicago truncatula HOM05D002102 ORTHO05D004119 2.8e-22 110.5 396 30.3
Sp4g17210 Schrenkiella parvula HOM05D002102 ORTHO05D004119 2.8e-22 110.5 209 38.3
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 3.7e-22 110.2 411 30.9
DCAR_004361 Daucus carota HOM05D002102 ORTHO05D004119 3.7e-22 110.2 196 40.3
THA.LOC104798573 Tarenaya hassleriana HOM05D002102 ORTHO05D004119 3.7e-22 110.2 198 41.4
Phvul.009G245100 Phaseolus vulgaris HOM05D002102 ORTHO05D004119 8.3e-22 109.0 199 38.7
AL4G30920 Arabidopsis lyrata HOM05D002102 ORTHO05D004119 1.4e-21 108.2 202 39.1
AL8G14890 Arabidopsis lyrata HOM05D002102 ORTHO05D004119 1.4e-21 108.2 222 37.4
AT5G44660 Arabidopsis thaliana HOM05D002102 ORTHO05D004119 1.8e-21 107.8 222 37.4
BcaB07g32751 Brassica carinata HOM05D002102 ORTHO05D004119 3.1e-21 107.1 207 38.2
Lalb_Chr05g0229071 Lupinus albus HOM05D002102 ORTHO05D004119 3.1e-21 107.1 199 40.2
Psat1g152040 Pisum sativum HOM05D002102 ORTHO05D004119 3.1e-21 107.1 388 30.7
TPR.G28833 Trifolium pratense HOM05D002102 ORTHO05D004119 3.1e-21 107.1 416 30.5
Carub.0004s1659 Capsella rubella HOM05D002102 ORTHO05D004119 5.4e-21 106.3 200 40.5
Carub.0008s0360 Capsella rubella HOM05D002102 ORTHO05D004119 9.1e-21 105.5 222 36.9
BcaC02g11574 Brassica carinata HOM05D002102 ORTHO05D004119 1.6e-20 104.8 207 38.6
C04p13880 Brassica napus HOM05D002102 ORTHO05D004119 1.6e-20 104.8 207 38.6
BolC4t22976H Brassica oleracea HOM05D002102 ORTHO05D004119 1.6e-20 104.8 207 38.6
CARHR030340 Cardamine hirsuta HOM05D002102 ORTHO05D004119 1.6e-20 104.8 215 40.0
AT2G34910 Arabidopsis thaliana HOM05D002102 ORTHO05D004119 2.0e-20 104.4 202 38.6
A05p10770 Brassica napus HOM05D002102 ORTHO05D004119 2.0e-20 104.4 207 38.2
BraA05t20021Z Brassica rapa HOM05D002102 ORTHO05D004119 2.0e-20 104.4 207 38.2
Lj6g0016862 Lotus japonicus HOM05D002102 ORTHO05D004119 2.0e-20 104.4 390 30.0
Thhalv10000939m.g Eutrema salsugineum HOM05D002102 ORTHO05D004119 3.5e-20 103.6 219 37.0
THA.LOC104814329 Tarenaya hassleriana HOM05D002102 ORTHO05D004119 3.5e-20 103.6 202 37.6
EL10Ac4g09794 Beta vulgaris HOM05D002102 ORTHO05D004119 7.7e-20 102.4 323 29.4
Sp2g09470 Schrenkiella parvula HOM05D002102 ORTHO05D004119 2.9e-19 100.5 219 36.1
AUR62007001 Chenopodium quinoa HOM05D002102 ORTHO05D004119 3.8e-19 100.1 316 33.2
TPR.G749 Trifolium pratense HOM05D002102 ORTHO05D004119 7.2e-18 95.9 205 39.5
ATR0602G086 Amborella trichopoda HOM05D002102 ORTHO05D004119 2.1e-17 94.4 179 41.3
BcaC06g31599 Brassica carinata HOM05D002102 ORTHO05D004119 2.8e-17 94.0 223 34.1
C07p27550 Brassica napus HOM05D002102 ORTHO05D004119 1.4e-16 91.7 224 34.8
BolC7t43286H Brassica oleracea HOM05D002102 ORTHO05D004119 1.4e-16 91.7 224 34.8
A06p47020 Brassica napus HOM05D002102 ORTHO05D004119 1.8e-16 91.3 224 34.8
arahy.Tifrunner.gnm1.ann1.K04KZH Arachis hypogaea HOM05D002102 ORTHO05D004119 2.3e-16 90.9 196 36.2
BcaC06g34526 Brassica carinata HOM05D002102 ORTHO05D004119 2.3e-16 90.9 224 33.9
BraA06t27575Z Brassica rapa HOM05D002102 ORTHO05D004119 2.3e-16 90.9 224 33.9
arahy.Tifrunner.gnm1.ann1.G5LJZZ Arachis hypogaea HOM05D002102 ORTHO05D004119 1.5e-15 88.2 193 34.7
BraA02t07888Z Brassica rapa HOM05D002102 ORTHO05D004119 3.7e-14 83.6 224 34.8
Os06g0574000 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D004119 1.1e-13 82.0 202 31.7
A02p28520 Brassica napus HOM05D002102 ORTHO05D004119 1.4e-13 81.6 224 34.4
BolC2t10555H Brassica oleracea HOM05D002102 ORTHO05D004119 5.4e-13 79.7 223 34.1
BcaC03g16685 Brassica carinata HOM05D002102 ORTHO05D004119 9.2e-13 79.0 224 33.9
BcaB07g30507 Brassica carinata HOM05D002102 ORTHO05D004119 1.6e-12 78.2 224 33.9
Zm00001eb385230 Zea mays HOM05D002102 ORTHO05D004119 5.9e-12 76.3 212 34.0
Cfa001161 Carpinus fangiana HOM05D002102 ORTHO05D004119 2.5e-10 70.9 102 48.0
A07p09590 Brassica napus HOM05D002102 ORTHO05D004119 7.3e-10 69.3 203 34.0
C07p14770 Brassica napus HOM05D002102 ORTHO05D004119 7.3e-10 69.3 202 34.2
BraA07t28753Z Brassica rapa HOM05D002102 ORTHO05D004119 7.3e-10 69.3 203 34.0
AUR62000648 Chenopodium quinoa HOM05D002102 ORTHO05D004119 7.3e-10 69.3 102 44.1
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 7.3e-10 69.3 159 34.6
BolC7t41979H Brassica oleracea HOM05D002102 ORTHO05D004119 9.5e-10 68.9 202 34.2
TPR.G11093 Trifolium pratense HOM05D002102 ORTHO05D004119 1.6e-09 68.2 154 39.6
BcaB03g13811 Brassica carinata HOM05D002102 ORTHO05D004119 2.8e-09 67.4 204 31.4


User provided reference genes

Program Settings