Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2738.8 1386 100.0
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2478.7 1394 89.5
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2376.3 1410 84.7
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2369.3 1394 86.0
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2349.3 1395 85.1
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2336.6 1392 84.5
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2325.4 1394 83.1
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2323.5 1394 83.1
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2298.1 1392 83.0
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2293.5 1405 82.2
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2288.8 1405 81.6
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2286.1 1395 81.9
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2285.0 1395 82.0
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2275.0 1395 82.2
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2268.8 1393 80.5
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2267.7 1397 81.9
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2265.7 1393 81.6
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2258.8 1388 81.0
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2258.8 1393 81.6
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2258.4 1391 81.7
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2257.3 1392 81.6
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2255.7 1392 80.8
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2250.3 1395 81.1
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2250.3 1394 81.3
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2249.6 1395 81.2
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2247.6 1394 80.1
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2244.2 1394 81.6
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2243.4 1392 79.8
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2242.2 1392 80.7
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2240.7 1392 80.9
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2239.5 1395 80.2
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2237.6 1395 80.9
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2237.2 1395 80.9
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2236.1 1392 80.8
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2234.1 1396 81.3
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2228.4 1394 80.6
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2227.6 1394 81.1
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2225.3 1395 79.7
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2219.5 1395 80.6
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2218.7 1392 80.3
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2213.7 1405 79.2
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2204.5 1430 78.7
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2202.6 1400 79.4
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2198.3 1395 79.1
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2192.2 1437 76.9
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2191.4 1395 78.5
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2191.4 1395 78.9
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2189.1 1486 75.1
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2189.1 1395 79.1
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2187.1 1395 78.5
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2184.5 1397 78.5
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2182.9 1391 77.9
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2182.9 1389 78.0
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2179.4 1391 77.9
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2177.5 1351 80.9
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 2175.2 1372 81.9
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2173.7 1408 78.7
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2163.3 1392 77.9
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2154.0 1381 79.1
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2140.5 1403 77.1
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2139.8 1394 77.8
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2137.5 1404 76.6
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2137.1 1418 77.7
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2135.1 1403 76.6
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2133.6 1401 76.8
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2130.5 1391 77.3
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2128.6 1489 73.3
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2124.4 1418 75.5
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2121.7 1403 76.3
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2121.3 1403 76.5
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2120.9 1404 76.4
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2117.0 1404 76.3
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2115.9 1403 76.1
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2105.9 1414 75.9
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2100.9 1365 76.8
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2092.0 1226 84.7
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2082.4 1257 82.7
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 2065.4 1335 78.7
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2064.7 1703 65.4
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 2004.9 1306 78.1
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1980.7 1352 73.8
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1974.1 1343 73.9
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1968.4 1334 75.1
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1922.5 1396 71.1
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1903.3 1377 69.6
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1901.7 1171 79.8
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1870.1 1384 68.6
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1859.0 1391 67.1
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1752.6 1532 61.4
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1528.8 934 82.2
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1446.4 1149 64.1
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1415.2 1373 52.9
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1404.4 981 74.8
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1385.5 822 83.3
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1356.7 1364 51.5
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1340.5 1351 50.6
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1340.5 1345 50.3
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1222.6 716 85.3
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1184.5 883 67.4
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1166.8 795 76.4
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1155.2 765 76.2
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1154.8 817 72.7
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 1.2e-288 997.3 598 82.6
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 4.1e-281 972.2 778 60.0
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.0e-247 861.3 604 73.2
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 3.6e-229 799.7 480 84.0
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 1.0e-199 701.8 512 68.9
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.5e-195 688.0 515 66.4
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 6.7e-183 646.0 1480 29.6
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 3.5e-155 553.9 521 59.9
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.4e-150 537.3 366 72.7
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.3e-137 494.2 533 51.0
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.4e-111 409.1 536 47.4
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 3.0e-98 364.8 275 66.5
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 1.1e-89 336.3 221 73.3
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 8.2e-88 330.1 192 80.7
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.7e-77 295.8 416 44.2
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.6e-62 246.1 300 47.7
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 7.7e-62 243.8 147 81.0
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 7.2e-52 210.7 139 74.1
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.6e-45 187.6 128 67.2
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 6.8e-42 177.6 116 77.6
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 9.5e-36 157.1 114 69.3
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 4.4e-33 148.3 94 77.7
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 2.9e-32 145.6 89 71.9
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.1e-31 143.7 157 46.5
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.4e-31 142.5 136 63.2
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 1.3e-29 136.7 84 75.0
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 6.6e-29 134.4 83 80.7
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 8.0e-27 127.5 153 54.9
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 8.0e-27 127.5 89 73.0
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 1.1e-26 127.1 113 61.1
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 1.5e-25 123.2 112 56.2
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 5.8e-25 121.3 239 38.1
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 5.4e-23 114.8 162 41.4
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 1.7e-21 109.8 99 55.6
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.3e-21 109.4 177 42.4
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.1e-21 108.2 85 65.9
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 7.3e-20 104.4 111 48.6
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 4.4e-17 95.1 65 76.9
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 9.9e-17 94.0 54 87.0
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.4e-15 90.1 50 90.0
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 3.5e-14 85.5 89 47.2
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 3.3e-12 79.0 65 67.7
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 6.2e-11 74.7 42 88.1
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 1.2e-09 70.5 106 39.6
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 3.8e-08 65.5 56 55.4
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 3.8e-08 65.5 56 55.4
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 4.9e-08 65.1 62 59.7
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 8.4e-08 64.3 44 72.7
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 8.4e-08 64.3 44 72.7
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 8.4e-08 64.3 44 72.7
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 8.4e-08 64.3 44 72.7
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 5.4e-07 61.6 54 55.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 9.3e-07 60.8 43 69.8


User provided reference genes

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