Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01972 Erythranthe guttata HOM05D003794 ORTHO05D004464 5.2e-101 370.9 171 100.0
MSTRG.7585 Avicennia marina HOM05D003794 ORTHO05D004464 1.6e-57 226.5 174 62.1
SalBow8G0239 Salvia bowleyana HOM05D003794 ORTHO05D004464 3.2e-50 202.2 174 56.9
SalBow8G3375 Salvia bowleyana HOM05D003794 ORTHO05D004464 3.2e-50 202.2 174 56.9
SalBow8G2459 Salvia bowleyana HOM05D003794 ORTHO05D004464 2.7e-49 199.1 167 55.7
SalBow8G4157 Salvia bowleyana HOM05D003794 ORTHO05D004464 7.8e-49 197.6 167 55.7
Oeu008720.1 Olea europaea HOM05D003794 ORTHO05D004464 7.3e-47 191.0 153 57.5
Migut.E01640 Erythranthe guttata HOM05D003794 ORTHO05D004464 3.6e-46 188.7 191 48.2
Migut.E00890 Erythranthe guttata HOM05D003794 ORTHO05D004464 2.4e-45 186.0 190 47.9
Cc09_g06260 Coffea canephora HOM05D003794 ORTHO05D004464 2.4e-42 176.0 172 50.0
Oeu050060.1 Olea europaea HOM05D003794 ORTHO05D004464 7.3e-39 164.5 165 49.1
Cc09_g06270 Coffea canephora HOM05D003794 ORTHO05D004464 1.6e-38 163.3 172 50.0
Cfa000722 Carpinus fangiana HOM05D003794 ORTHO05D004464 5.3e-37 158.3 177 44.1
MELO3C021763.2 Cucumis melo HOM05D003794 ORTHO05D004464 9.0e-37 157.5 175 49.1
Hma1.2p1_0040F.1_g025090 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 9.0e-37 157.5 176 47.7
Lj1A1144T44 Lonicera japonica HOM05D003794 ORTHO05D004464 1.5e-36 156.8 169 46.7
CsaV3_1G046440 Cucumis sativus L. HOM05D003794 ORTHO05D004464 2.6e-36 156.0 175 47.4
QL11p018066 Quercus lobata HOM05D003794 ORTHO05D004464 3.4e-36 155.6 177 45.2
Haze_06027 Corylus avellana HOM05D003794 ORTHO05D004464 5.8e-36 154.8 171 43.9
Haze_06028 Corylus avellana HOM05D003794 ORTHO05D004464 5.8e-36 154.8 171 43.9
ClCG01G009260 Citrullus lanatus HOM05D003794 ORTHO05D004464 7.6e-36 154.5 177 46.9
CsaV3_6G053030 Cucumis sativus L. HOM05D003794 ORTHO05D004464 9.9e-36 154.1 160 45.0
CSS0016108 Camellia sinensis var. sinensis HOM05D003794 ORTHO05D004464 3.8e-35 152.1 148 50.7
ClCG01G009270 Citrullus lanatus HOM05D003794 ORTHO05D004464 3.8e-35 152.1 176 47.7
Sed0014796 Sechium edule HOM05D003794 ORTHO05D004464 1.4e-34 150.2 160 48.1
CiPaw.09G078700 Carya illinoinensis HOM05D003794 ORTHO05D004464 1.9e-34 149.8 145 46.9
PGR042G1704 Punica granatum HOM05D003794 ORTHO05D004464 3.2e-34 149.1 170 44.1
Dinv05961 Davidia involucrata HOM05D003794 ORTHO05D004464 5.4e-34 148.3 184 44.6
FAN16G1323 Fragaria x ananassa HOM05D003794 ORTHO05D004464 5.4e-34 148.3 145 47.6
ClCG01G009280 Citrullus lanatus HOM05D003794 ORTHO05D004464 7.1e-34 147.9 173 43.4
FAN25G3487 Fragaria x ananassa HOM05D003794 ORTHO05D004464 1.2e-33 147.1 150 46.0
Sed0017866 Sechium edule HOM05D003794 ORTHO05D004464 2.7e-33 146.0 174 44.3
Gohir.D06G145100 Gossypium hirsutum HOM05D003794 ORTHO05D004464 3.5e-33 145.6 168 43.5
Gorai.010G168800 Gossypium raimondii HOM05D003794 ORTHO05D004464 3.5e-33 145.6 168 43.5
BcaB07g32782 Brassica carinata HOM05D003794 ORTHO05D004464 6.0e-33 144.8 151 46.4
ClCG01G009250 Citrullus lanatus HOM05D003794 ORTHO05D004464 7.8e-33 144.4 176 44.3
Gohir.A06G140900 Gossypium hirsutum HOM05D003794 ORTHO05D004464 7.8e-33 144.4 168 41.7
Sed0013970 Sechium edule HOM05D003794 ORTHO05D004464 1.0e-32 144.1 175 44.6
CsaV3_1G046430 Cucumis sativus L. HOM05D003794 ORTHO05D004464 1.3e-32 143.7 177 46.9
A09p35040 Brassica napus HOM05D003794 ORTHO05D004464 2.3e-32 142.9 148 45.3
BraA09t39035Z Brassica rapa HOM05D003794 ORTHO05D004464 2.3e-32 142.9 148 45.9
RcHm_v2.0_Chr5g0019901 Rosa chinensis HOM05D003794 ORTHO05D004464 2.3e-32 142.9 149 47.0
BcaC05g24807 Brassica carinata HOM05D003794 ORTHO05D004464 3.0e-32 142.5 150 46.0
C05p08300 Brassica napus HOM05D003794 ORTHO05D004464 3.0e-32 142.5 150 46.0
BolC5t29580H Brassica oleracea HOM05D003794 ORTHO05D004464 3.0e-32 142.5 150 46.0
Potri.015G120200 Populus trichocarpa HOM05D003794 ORTHO05D004464 3.9e-32 142.1 176 38.6
BcaC05g24803 Brassica carinata HOM05D003794 ORTHO05D004464 5.1e-32 141.7 150 45.3
Prupe.4G110400 Prunus persica HOM05D003794 ORTHO05D004464 5.1e-32 141.7 164 43.3
CANSAT35G2022 Cannabis sativa HOM05D003794 ORTHO05D004464 6.6e-32 141.4 151 45.0
COL.COLO4_30982 Corchorus olitorius HOM05D003794 ORTHO05D004464 8.7e-32 141.0 182 39.6
MELO3C021767.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.5e-31 140.2 178 42.7
PSO675G7591 Papaver somniferum HOM05D003794 ORTHO05D004464 1.5e-31 140.2 172 43.0
Thecc.06G141300 Theobroma cacao HOM05D003794 ORTHO05D004464 1.5e-31 140.2 170 42.4
Cpa.g.sc135.30 Carica papaya HOM05D003794 ORTHO05D004464 1.9e-31 139.8 186 43.0
Sabra15G0137100 Salix brachista HOM05D003794 ORTHO05D004464 1.9e-31 139.8 180 40.6
AL1G20850 Arabidopsis lyrata HOM05D003794 ORTHO05D004464 2.5e-31 139.4 179 39.7
A06p06810 Brassica napus HOM05D003794 ORTHO05D004464 2.5e-31 139.4 178 41.0
BraA06t23895Z Brassica rapa HOM05D003794 ORTHO05D004464 2.5e-31 139.4 178 41.0
Actinidia37906 Actinidia chinensis HOM05D003794 ORTHO05D004464 3.3e-31 139.0 149 47.7
AT1G10155 Arabidopsis thaliana HOM05D003794 ORTHO05D004464 4.3e-31 138.7 150 44.0
Ciclev10016974m.g Citrus clementina HOM05D003794 ORTHO05D004464 4.3e-31 138.7 175 43.4
MELO3C007006.2 Cucumis melo HOM05D003794 ORTHO05D004464 4.3e-31 138.7 150 41.3
TWI38G0727 Tripterygium wilfordii HOM05D003794 ORTHO05D004464 4.3e-31 138.7 156 42.9
ClCG01G025820 Citrullus lanatus HOM05D003794 ORTHO05D004464 5.6e-31 138.3 160 40.0
FvH4_3g12160 Fragaria vesca HOM05D003794 ORTHO05D004464 5.6e-31 138.3 150 44.7
Sp1g27020 Schrenkiella parvula HOM05D003794 ORTHO05D004464 5.6e-31 138.3 177 40.7
Atru.chr10.446 Acer truncatum HOM05D003794 ORTHO05D004464 9.6e-31 137.5 157 45.2
Thhalv10008847m.g Eutrema salsugineum HOM05D003794 ORTHO05D004464 9.6e-31 137.5 150 43.3
Thhalv10009870m.g Eutrema salsugineum HOM05D003794 ORTHO05D004464 9.6e-31 137.5 150 45.3
MBI18_g03837_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D004464 9.6e-31 137.5 169 43.2
BcaC05g27150 Brassica carinata HOM05D003794 ORTHO05D004464 1.3e-30 137.1 176 38.6
C05p30370 Brassica napus HOM05D003794 ORTHO05D004464 1.3e-30 137.1 176 38.6
CAN.G519.1 Capsicum annuum HOM05D003794 ORTHO05D004464 1.3e-30 137.1 170 42.4
MD05G1254300 Malus domestica HOM05D003794 ORTHO05D004464 1.3e-30 137.1 178 39.9
Sed0015410 Sechium edule HOM05D003794 ORTHO05D004464 1.3e-30 137.1 167 42.5
Aa31LG2G15150 Aethionema arabicum HOM05D003794 ORTHO05D004464 1.6e-30 136.7 144 47.2
Sed0012046 Sechium edule HOM05D003794 ORTHO05D004464 1.6e-30 136.7 148 45.3
GSVIVG01012087001 Vitis vinifera HOM05D003794 ORTHO05D004464 1.6e-30 136.7 176 40.9
CAN.G519.2 Capsicum annuum HOM05D003794 ORTHO05D004464 2.1e-30 136.3 165 43.0
Carub.0001s0957 Capsella rubella HOM05D003794 ORTHO05D004464 2.8e-30 136.0 150 42.7
Carub.0001s2960 Capsella rubella HOM05D003794 ORTHO05D004464 2.8e-30 136.0 180 38.3
Peaxi162Scf00367g00015 Petunia axillaris HOM05D003794 ORTHO05D004464 2.8e-30 136.0 164 42.7
GSVIVG01012092001 Vitis vinifera HOM05D003794 ORTHO05D004464 2.8e-30 136.0 174 40.8
PSO675G9055 Papaver somniferum HOM05D003794 ORTHO05D004464 3.6e-30 135.6 147 44.9
RcHm_v2.0_Chr5g0019921 Rosa chinensis HOM05D003794 ORTHO05D004464 3.6e-30 135.6 149 44.3
Sp1g08790 Schrenkiella parvula HOM05D003794 ORTHO05D004464 3.6e-30 135.6 150 43.3
Sed0022492 Sechium edule HOM05D003794 ORTHO05D004464 3.6e-30 135.6 149 40.3
Nitab4.5_0000767g0010 Nicotiana tabacum HOM05D003794 ORTHO05D004464 8.1e-30 134.4 172 42.4
Aa31LG9G16050 Aethionema arabicum HOM05D003794 ORTHO05D004464 1.1e-29 134.0 151 42.4
Duzib235G0411 Durio zibethinus HOM05D003794 ORTHO05D004464 1.4e-29 133.7 175 39.4
Potri.012G120340 Populus trichocarpa HOM05D003794 ORTHO05D004464 2.4e-29 132.9 167 37.7
Aqoxy4G00780 Aquilegia oxysepala HOM05D003794 ORTHO05D004464 3.1e-29 132.5 178 40.4
CsaV3_1G046610 Cucumis sativus L. HOM05D003794 ORTHO05D004464 3.1e-29 132.5 179 43.6
MD10G1234400 Malus domestica HOM05D003794 ORTHO05D004464 3.1e-29 132.5 178 41.0
CsaV3_1G046600 Cucumis sativus L. HOM05D003794 ORTHO05D004464 4.0e-29 132.1 173 41.6
AL1G49280 Arabidopsis lyrata HOM05D003794 ORTHO05D004464 6.9e-29 131.3 186 37.1
Duzib160G0344 Durio zibethinus HOM05D003794 ORTHO05D004464 9.0e-29 131.0 179 39.1
MELO3C021768.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.5e-28 130.2 156 43.6
PGSC0003DMG400010357 Solanum tuberosum HOM05D003794 ORTHO05D004464 1.5e-28 130.2 167 42.5
THA.LOC104814363 Tarenaya hassleriana HOM05D003794 ORTHO05D004464 1.5e-28 130.2 172 37.8
Thecc.06G140300 Theobroma cacao HOM05D003794 ORTHO05D004464 1.5e-28 130.2 173 39.9
ClCG01G009290 Citrullus lanatus HOM05D003794 ORTHO05D004464 2.6e-28 129.4 154 46.1
Nitab4.5_0006444g0020 Nicotiana tabacum HOM05D003794 ORTHO05D004464 3.4e-28 129.0 172 41.9
Actinidia33654 Actinidia chinensis HOM05D003794 ORTHO05D004464 5.8e-28 128.3 152 44.7
RcHm_v2.0_Chr5g0019931 Rosa chinensis HOM05D003794 ORTHO05D004464 5.8e-28 128.3 148 43.2
SalBow7G3321 Salvia bowleyana HOM05D003794 ORTHO05D004464 5.8e-28 128.3 150 44.0
BolC5t31776H Brassica oleracea HOM05D003794 ORTHO05D004464 9.9e-28 127.5 169 38.5
GSVIVG01012089001 Vitis vinifera HOM05D003794 ORTHO05D004464 9.9e-28 127.5 153 41.8
Solyc02g069065.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 1.3e-27 127.1 168 39.9
arahy.Tifrunner.gnm1.ann1.D9MA0I Arachis hypogaea HOM05D003794 ORTHO05D004464 3.8e-27 125.6 162 40.1
Glyma.06G221100 Glycine max HOM05D003794 ORTHO05D004464 3.8e-27 125.6 163 46.6
Solyc02g069055.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 3.8e-27 125.6 169 39.1
Sopen02g018150 Solanum pennellii HOM05D003794 ORTHO05D004464 3.8e-27 125.6 167 40.7
Manes.16G059600 Manihot esculenta HOM05D003794 ORTHO05D004464 6.4e-27 124.8 172 37.2
Sopen02g010020 Solanum pennellii HOM05D003794 ORTHO05D004464 6.4e-27 124.8 165 42.4
Cpa.g.sc135.26 Carica papaya HOM05D003794 ORTHO05D004464 1.1e-26 124.0 196 41.3
Solyc02g069057.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 1.1e-26 124.0 167 38.3
Lj6g0000845 Lotus japonicus HOM05D003794 ORTHO05D004464 1.4e-26 123.6 167 40.7
Medtr0026s0010 Medicago truncatula HOM05D003794 ORTHO05D004464 1.4e-26 123.6 167 40.1
Phvul.009G205500 Phaseolus vulgaris HOM05D003794 ORTHO05D004464 1.9e-26 123.2 166 44.6
Aqoxy4G00782 Aquilegia oxysepala HOM05D003794 ORTHO05D004464 3.2e-26 122.5 147 44.2
Sopen02g018160 Solanum pennellii HOM05D003794 ORTHO05D004464 4.2e-26 122.1 170 39.4
CAN.G39.22 Capsicum annuum HOM05D003794 ORTHO05D004464 1.2e-25 120.6 167 40.1
Solyc02g031740.3 Solanum lycopersicum HOM05D003794 ORTHO05D004464 1.2e-25 120.6 165 40.6
Manes.16G059700 Manihot esculenta HOM05D003794 ORTHO05D004464 2.7e-25 119.4 170 37.6
Lalb_Chr11g0072291 Lupinus albus HOM05D003794 ORTHO05D004464 6.0e-25 118.2 167 41.3
arahy.Tifrunner.gnm1.ann1.I4JYF5 Arachis hypogaea HOM05D003794 ORTHO05D004464 7.9e-25 117.9 139 42.4
Gohir.A09G025201 Gossypium hirsutum HOM05D003794 ORTHO05D004464 1.3e-24 117.1 147 39.5
Solyc02g069053.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 1.3e-24 117.1 167 37.1
VMungo1309G0946 Vigna mungo HOM05D003794 ORTHO05D004464 5.1e-24 115.2 161 41.6
Potri.012G120280 Populus trichocarpa HOM05D003794 ORTHO05D004464 8.7e-24 114.4 153 33.3
Gorai.006G028700 Gossypium raimondii HOM05D003794 ORTHO05D004464 1.1e-23 114.0 148 38.5
Potri.015G118900 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.5e-23 113.6 153 37.9
TPR.G9537 Trifolium pratense HOM05D003794 ORTHO05D004464 3.3e-23 112.5 169 40.8
Potri.012G120160 Populus trichocarpa HOM05D003794 ORTHO05D004464 4.3e-23 112.1 153 34.0
Phvul.009G205600 Phaseolus vulgaris HOM05D003794 ORTHO05D004464 7.4e-23 111.3 162 39.5
Sabra15G0137000 Salix brachista HOM05D003794 ORTHO05D004464 1.6e-22 110.2 144 37.5
Dinv05549 Davidia involucrata HOM05D003794 ORTHO05D004464 3.7e-22 109.0 163 39.9
Gohir.D09G024500 Gossypium hirsutum HOM05D003794 ORTHO05D004464 4.8e-22 108.6 151 37.7
MBI18_g20612_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D004464 4.8e-22 108.6 169 37.3
Solyc02g069060.4 Solanum lycopersicum HOM05D003794 ORTHO05D004464 6.2e-22 108.2 150 42.0
Potri.015G120100 Populus trichocarpa HOM05D003794 ORTHO05D004464 8.1e-22 107.8 154 34.4
Gohir.D03G117566 Gossypium hirsutum HOM05D003794 ORTHO05D004464 1.8e-21 106.7 144 38.2
Hma1.2p1_2069F.1_g313120 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 4.0e-21 105.5 122 41.8
ATR0763G193 Amborella trichopoda HOM05D003794 ORTHO05D004464 5.3e-21 105.1 179 38.5
AT1G31200 Arabidopsis thaliana HOM05D003794 ORTHO05D004464 1.5e-20 103.6 129 41.1
CARHR030680 Cardamine hirsuta HOM05D003794 ORTHO05D004464 2.0e-20 103.2 129 41.1
HPP92_005937 Vanilla planifolia HOM05D003794 ORTHO05D004464 2.6e-20 102.8 175 38.9
Sabra12G0088800 Salix brachista HOM05D003794 ORTHO05D004464 1.7e-19 100.1 157 34.4
Hma1.2p1_0502F.1_g167680 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 2.2e-19 99.8 122 40.2
THA.LOC104798619 Tarenaya hassleriana HOM05D003794 ORTHO05D004464 2.2e-19 99.8 126 42.9
Sabra12G0088700 Salix brachista HOM05D003794 ORTHO05D004464 2.9e-19 99.4 177 32.2
Nitab4.5_0003773g0100 Nicotiana tabacum HOM05D003794 ORTHO05D004464 4.9e-19 98.6 116 45.7
Sabra12G0091800 Salix brachista HOM05D003794 ORTHO05D004464 2.5e-18 96.3 173 31.2
MD10G1234200 Malus domestica HOM05D003794 ORTHO05D004464 7.1e-18 94.7 122 40.2
Potri.015G120000 Populus trichocarpa HOM05D003794 ORTHO05D004464 7.1e-18 94.7 151 34.4
Potri.015G118800 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.6e-17 93.6 153 34.6
Sabra06G0010100 Salix brachista HOM05D003794 ORTHO05D004464 1.0e-16 90.9 136 33.8
Psat1g023680 Pisum sativum HOM05D003794 ORTHO05D004464 3.9e-16 89.0 115 42.6
Dinv13778 Davidia involucrata HOM05D003794 ORTHO05D004464 4.8e-14 82.0 129 37.2
Potri.015G118850 Populus trichocarpa HOM05D003794 ORTHO05D004464 6.2e-14 81.6 102 40.2
MBI15_g34447_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D000638 3.1e-13 79.3 123 39.0
QL11p018056 Quercus lobata HOM05D003794 ORTHO05D004464 2.0e-12 76.6 155 29.0
TAR627G0658 Trochodendron aralioides HOM05D003794 ORTHO05D004464 2.0e-12 76.6 168 33.3
Potri.015G119100 Populus trichocarpa HOM05D003794 ORTHO05D004464 2.6e-12 76.3 123 36.6
ATR0763G032 Amborella trichopoda HOM05D003794 ORTHO05D004464 1.7e-11 73.6 151 31.1
Dinv41335 Davidia involucrata HOM05D003794 ORTHO05D004464 5.0e-11 72.0 86 44.2
PGSC0003DMG400010359 Solanum tuberosum HOM05D003794 ORTHO05D004464 5.0e-11 72.0 91 41.8
Actinidia22389 Actinidia chinensis HOM05D003794 ORTHO05D004464 9.3e-10 67.8 169 31.4
Ciclev10016835m.g Citrus clementina HOM05D003794 ORTHO05D004464 1.2e-09 67.4 173 28.9
SMO234G0084 Selaginella moellendorffii HOM05D000950 ORTHO05D000146 2.1e-09 66.6 148 27.7
MBI11_g00237_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D004464 4.6e-09 65.5 146 32.9
MELO3C001310.2 Cucumis melo HOM05D003794 ORTHO05D004464 7.9e-09 64.7 74 47.3
MELO3C027674.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.3e-08 63.9 54 55.6
MBI11_g00239_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D004464 1.8e-08 63.5 170 27.6
arahy.Tifrunner.gnm1.ann1.G758HF Arachis hypogaea HOM05D044891 ORTHO05D038927 3.9e-08 62.4 166 27.7
Potri.012G120400 Populus trichocarpa HOM05D000248 ORTHO05D000146 3.9e-08 62.4 145 31.0
PSO675G0473 Papaver somniferum HOM05D000248 ORTHO05D000146 7.4e-07 58.2 147 28.6
unitig_0.g1283 Utricularia gibba HOM05D000950 ORTHO05D000774 9.7e-07 57.8 163 26.4
MELO3C027491.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.3e-06 57.4 68 45.6
PSO541G4482 Papaver somniferum HOM05D000248 ORTHO05D000146 1.6e-06 57.0 152 27.6
Lj2A352T44 Lonicera japonica HOM05D000248 ORTHO05D000146 4.8e-06 55.5 65 40.0
Prupe.8G030200 Prunus persica HOM05D000248 ORTHO05D000146 8.2e-06 54.7 157 30.6


User provided reference genes

Program Settings