Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 1.5e-33 145.6 72 100.0
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 6.5e-21 103.6 70 72.9
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 8.7e-18 93.2 72 65.3
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 2.5e-17 91.7 74 62.2
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 5.7e-17 90.5 74 60.8
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 7.4e-17 90.1 73 61.6
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 9.7e-17 89.7 74 60.8
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 2.2e-16 88.6 67 65.7
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 2.8e-16 88.2 72 61.1
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 3.7e-16 87.8 72 59.7
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 3.7e-16 87.8 74 62.2
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 4.8e-16 87.4 72 59.7
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 1.8e-15 85.5 73 60.3
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 1.8e-15 85.5 70 58.6
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 2.4e-15 85.1 72 56.9
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 2.4e-15 85.1 72 56.9
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 3.1e-15 84.7 72 59.7
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 4.1e-15 84.3 73 58.9
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 4.1e-15 84.3 73 58.9
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 5.3e-15 84.0 73 58.9
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 5.3e-15 84.0 73 58.9
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 6.9e-15 83.6 73 58.9
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 6.9e-15 83.6 72 58.3
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 6.9e-15 83.6 73 57.5
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 6.9e-15 83.6 72 62.5
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 6.9e-15 83.6 71 57.7
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 6.9e-15 83.6 77 57.1
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 9.0e-15 83.2 73 58.9
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 1.2e-14 82.8 72 56.9
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 2.0e-14 82.0 72 58.3
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 2.6e-14 81.6 72 54.2
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 2.6e-14 81.6 54 74.1
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 4.5e-14 80.9 76 56.6
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 5.9e-14 80.5 72 54.2
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 5.9e-14 80.5 76 53.9
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 7.7e-14 80.1 77 57.1
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 7.7e-14 80.1 77 55.8
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 7.7e-14 80.1 72 58.3
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 1.7e-13 79.0 67 59.7
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 2.2e-13 78.6 73 53.4
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 2.2e-13 78.6 73 57.5
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 2.9e-13 78.2 74 54.1
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 2.9e-13 78.2 72 51.4
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 2.9e-13 78.2 72 58.3
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 3.8e-13 77.8 72 55.6
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 3.8e-13 77.8 72 54.2
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 3.8e-13 77.8 61 59.0
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 3.8e-13 77.8 72 58.3
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 3.8e-13 77.8 69 55.1
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 5.0e-13 77.4 77 54.5
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 5.0e-13 77.4 50 68.0
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 6.5e-13 77.0 74 51.4
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 8.5e-13 76.6 54 66.7
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 8.5e-13 76.6 59 59.3
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 1.4e-12 75.9 49 71.4
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 1.4e-12 75.9 72 55.6
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 1.4e-12 75.9 76 55.3
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 2.5e-12 75.1 64 57.8
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 2.5e-12 75.1 59 59.3
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 4.2e-12 74.3 72 55.6
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 7.2e-12 73.6 60 60.0
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 9.4e-12 73.2 60 58.3
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 9.4e-12 73.2 72 51.4
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.2e-11 72.8 52 63.5
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 1.6e-11 72.4 70 50.0
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 4.6e-11 70.9 60 56.7
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 7.9e-11 70.1 62 54.8
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 8.8e-10 66.6 49 63.3
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.5e-09 65.9 75 48.0
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 1.5e-09 65.9 58 58.6
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 1.5e-09 65.9 49 69.4
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 2.5e-09 65.1 66 48.5
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 3.3e-09 64.7 47 61.7
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 3.3e-09 64.7 47 61.7
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 3.3e-09 64.7 63 55.6
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 3.3e-09 64.7 70 47.1
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 4.3e-09 64.3 46 63.0
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 4.1e-07 57.8 40 60.0
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 4.1e-07 57.8 67 41.8
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 6.9e-07 57.0 44 59.1
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 1.2e-06 56.2 63 49.2
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 1.5e-06 55.8 51 58.8
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 1.5e-06 55.8 51 58.8
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 2.6e-06 55.1 51 58.8


User provided reference genes

Program Settings