Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 0.0e+00 1172.5 564 100.0
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 0.0e+00 1097.4 561 92.9
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 0.0e+00 1091.3 561 91.8
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 0.0e+00 1088.9 561 91.8
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 0.0e+00 1077.0 561 90.7
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.3e-310 1068.9 561 90.6
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 2.9e-310 1067.8 561 90.4
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 3.8e-310 1067.4 561 89.8
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 7.2e-309 1063.1 561 90.2
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 9.4e-309 1062.8 557 89.9
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.2e-308 1062.4 557 89.9
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 2.1e-308 1061.6 561 89.7
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 6.1e-308 1060.1 556 89.7
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.0e-307 1059.3 561 89.1
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 1.0e-307 1059.3 562 89.0
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.4e-307 1058.9 561 89.8
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 2.3e-307 1058.1 561 88.9
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 6.7e-307 1056.6 561 89.5
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.1e-306 1055.8 562 89.0
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.1e-306 1055.8 562 89.0
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 1.1e-306 1055.8 561 89.3
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 4.4e-306 1053.9 561 89.3
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 561 89.5
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 3.7e-305 1050.8 561 89.1
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 6.3e-305 1050.0 561 89.7
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 8.2e-305 1049.7 564 89.2
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 1.1e-304 1049.3 556 89.2
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 4.1e-304 1047.3 561 88.6
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 2.6e-303 1044.6 561 89.1
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 561 87.7
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.0e-302 1042.7 561 88.6
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 561 87.9
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 6.5e-302 1040.0 561 88.1
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 2.5e-301 1038.1 561 86.6
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 7.2e-301 1036.6 561 86.6
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.4e-301 1036.2 552 87.9
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 1.6e-300 1035.4 561 87.3
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 2.7e-300 1034.6 561 87.3
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 2.7e-300 1034.6 561 87.9
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 3.6e-300 1034.2 561 88.1
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 4.7e-300 1033.9 561 86.6
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 8.0e-300 1033.1 561 87.2
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 556 88.1
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.8e-299 1031.9 561 86.8
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 561 86.6
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 561 87.2
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 8.8e-299 1029.6 561 86.8
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 561 87.2
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 3.3e-298 1027.7 561 87.9
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 561 86.6
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 561 86.6
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 5.7e-298 1026.9 561 87.5
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 9.7e-298 1026.2 561 87.5
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 561 86.6
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.7e-297 1025.4 556 87.2
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.7e-297 1024.2 561 86.3
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 3.1e-296 1021.1 561 86.8
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 4.1e-296 1020.8 561 85.2
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 5.3e-296 1020.4 562 86.7
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 9.1e-296 1019.6 554 88.1
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 9.1e-296 1019.6 553 86.4
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 1.6e-295 1018.8 556 86.7
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 1.6e-295 1018.8 556 86.7
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.7e-294 1015.4 561 84.8
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.7e-294 1015.4 562 86.3
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 2.9e-294 1014.6 552 85.9
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 3.8e-294 1014.2 562 85.9
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 5.0e-294 1013.8 554 87.2
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 562 84.5
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.9e-293 1011.9 557 86.7
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 7.2e-293 1010.0 556 85.1
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 9.4e-293 1009.6 562 85.8
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 563 85.6
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 6.1e-292 1006.9 563 85.6
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 8.0e-292 1006.5 561 84.0
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 8.8e-291 1003.0 570 83.0
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 8.8e-291 1003.0 552 85.0
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.5e-290 1002.3 556 86.3
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 4.4e-290 1000.7 550 85.6
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 2.8e-289 998.0 562 84.5
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 8.3e-289 996.5 562 84.3
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 3.1e-288 994.6 551 84.6
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 4.1e-288 994.2 562 84.5
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 9.1e-288 993.0 562 84.3
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 9.1e-288 993.0 562 84.3
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 9.1e-288 993.0 562 84.3
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 4.5e-287 990.7 562 84.2
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.9e-287 990.3 549 85.4
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 7.7e-287 989.9 565 83.2
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.3e-286 989.2 562 83.6
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.9e-286 988.0 549 85.2
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 3.8e-286 987.6 562 83.6
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 8.5e-286 986.5 562 82.7
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 2.5e-285 984.9 562 83.6
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.5e-285 984.9 563 83.7
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 3.2e-285 984.6 562 83.5
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 3.2e-285 984.6 562 83.5
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 4.2e-285 984.2 562 83.5
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 5.5e-285 983.8 565 83.4
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 1.6e-284 982.2 562 83.3
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 2.1e-284 981.9 562 82.9
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 3.6e-284 981.1 563 83.5
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 6.1e-284 980.3 562 82.9
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 8.0e-284 979.9 563 83.3
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 1.4e-283 979.2 563 83.1
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.8e-283 978.8 534 85.4
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 2.3e-283 978.4 562 82.9
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 4.0e-283 977.6 562 83.1
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 4.0e-283 977.6 561 83.1
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 6.8e-283 976.9 562 82.9
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 5.7e-282 973.8 562 82.9
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 2.4e-280 968.4 562 82.0
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.4e-280 968.4 564 81.0
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 7.8e-279 963.4 558 82.3
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.0e-278 963.0 564 80.1
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.5e-277 959.1 562 80.8
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.0e-275 953.0 564 80.0
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.0e-274 948.7 564 80.1
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 9.8e-274 946.4 564 79.3
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.2e-273 945.3 563 81.7
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 4.1e-272 941.0 564 78.9
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 3.3e-269 931.4 556 78.8
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.3e-269 931.4 565 78.4
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 3.6e-268 927.9 554 79.2
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 1.5e-266 922.5 524 83.8
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.5e-266 922.5 554 78.3
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.9e-264 915.6 553 78.7
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.6e-263 912.5 563 78.5
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 3.3e-261 904.8 564 75.7
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 8.9e-259 896.7 564 74.8
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.2e-258 896.3 555 74.8
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.2e-255 886.3 564 74.5
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 1.9e-253 879.0 557 78.8
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 2.5e-253 878.6 551 75.9
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.3e-249 866.3 564 73.2
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 2.2e-249 865.5 565 74.3
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.3e-246 856.3 553 75.0
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.2e-242 843.2 564 71.1
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.1e-239 832.4 469 82.5
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 3.8e-225 785.0 424 88.9
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 4.2e-216 755.0 561 67.4
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.6e-215 753.1 561 67.6
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.7e-213 744.6 425 82.6
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.8e-190 667.5 373 82.6
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.1e-179 632.5 541 55.8
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.9e-169 599.4 417 71.5
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 6.5e-169 598.2 324 83.0
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 6.8e-166 588.2 488 55.5
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.8e-164 582.8 529 52.0
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 4.0e-158 562.4 290 87.9
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.7e-148 530.4 418 59.1
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.7e-140 502.7 564 50.9
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 6.4e-140 501.9 552 51.3
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 7.8e-130 468.4 463 55.5
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 2.3e-129 466.8 304 72.7
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 6.1e-90 335.9 549 39.9
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 7.2e-83 312.4 491 36.7
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.4e-81 308.1 211 71.6
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 2.8e-63 247.3 195 62.6
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 3.1e-62 243.8 195 61.5
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.7e-60 238.0 166 66.3
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.1e-51 208.8 119 83.2
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 8.0e-50 202.6 133 76.7
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 7.5e-48 196.1 128 77.3
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 2.8e-47 194.1 127 70.9
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 2.7e-45 187.6 166 63.3
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 1.0e-44 185.7 166 63.3
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.7e-44 184.9 166 63.3
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.9e-43 181.4 166 62.7
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.6e-37 161.8 319 31.7
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.3e-31 142.1 532 25.6
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 3.7e-31 140.6 213 41.8
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.9e-30 138.3 87 71.3
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.7e-29 134.4 90 71.1
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 8.6e-28 129.4 85 67.1
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 2.8e-26 124.4 76 71.1
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 4.0e-25 120.6 184 43.5
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.0e-20 105.9 166 43.4
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.2e-18 99.0 103 49.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 6.6e-12 76.6 46 67.4


User provided reference genes

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