Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 3308.1 1727 100.0
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2658.2 1742 80.0
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2652.1 1741 79.1
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2528.8 1782 75.1
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2447.5 1717 74.1
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2377.8 1724 71.2
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2361.3 1746 69.9
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2359.3 1740 71.3
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2351.2 1743 69.9
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2338.9 1706 70.9
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2334.7 1735 69.7
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2330.8 1743 69.2
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2317.7 1739 69.9
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2316.2 1711 69.7
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2315.4 1724 69.1
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2307.3 1735 69.3
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2301.9 1702 69.7
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2297.3 1724 68.6
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2289.2 1735 68.2
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2283.1 1737 69.1
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2282.3 1706 68.7
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2274.6 1736 67.4
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2272.7 1737 68.0
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2272.3 1744 69.1
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2263.4 1717 68.0
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2256.1 1704 67.8
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2242.2 1717 68.5
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2241.5 1721 67.4
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2237.2 1753 66.1
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2226.4 1717 68.5
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2225.7 1742 66.5
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2221.0 1741 66.5
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2218.0 1715 67.6
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2217.6 1713 67.3
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2215.3 1734 66.1
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2210.6 1753 65.7
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2202.9 1743 65.7
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2202.6 1742 66.5
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2202.2 1741 66.7
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2195.6 1790 65.6
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2194.5 1753 65.1
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2190.6 1734 66.0
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2186.0 1686 67.2
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2182.5 1700 66.5
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2176.4 1693 68.0
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2171.7 1730 65.5
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2168.7 1725 65.5
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2160.6 1747 65.0
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2139.4 1717 66.0
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2137.1 1757 65.3
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2135.5 1712 64.4
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2132.1 1709 65.4
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2122.8 1704 64.6
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2112.8 1737 62.5
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2112.0 1711 64.1
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2111.6 1706 64.1
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2110.1 1712 64.3
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2110.1 1726 64.3
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2101.6 1745 64.2
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2095.5 1640 67.2
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2089.3 1715 63.4
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2089.3 1708 63.5
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2088.5 1707 64.1
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2087.0 1716 63.7
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2086.2 1706 64.5
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2085.1 1717 62.8
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2080.8 1883 60.6
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2077.0 1682 64.5
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2063.9 2155 55.1
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2061.2 1709 63.0
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2060.8 1700 64.5
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2059.3 1710 63.3
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2054.6 1742 62.7
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2050.4 1697 63.8
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2049.2 1736 62.4
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2023.8 1728 62.7
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2022.3 1798 60.8
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 2013.0 1837 62.2
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1999.9 1415 69.9
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1994.9 1729 61.7
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1985.3 1713 60.7
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1929.8 1753 58.5
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1924.1 1714 58.8
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1921.7 1713 60.2
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1916.4 1666 62.0
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1856.3 1707 59.0
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1853.2 1295 68.4
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1844.7 1293 68.4
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1841.6 1759 56.7
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1811.6 1159 74.9
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1793.9 1461 63.3
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1742.6 1465 64.6
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1639.4 1608 54.0
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1625.1 1691 52.1
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1620.9 1695 53.7
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1614.7 1731 51.3
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1604.3 1738 54.3
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1534.6 1659 50.2
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1507.7 1045 70.0
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1479.9 936 76.3
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1429.5 1084 63.2
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1364.4 1131 65.0
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1327.8 1384 54.0
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1281.5 1112 62.9
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1253.4 1189 57.9
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1116.7 952 64.9
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 7.6e-309 1064.7 910 59.8
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.5e-277 960.7 742 64.0
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 4.6e-274 949.1 616 76.0
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.2e-242 844.7 681 58.9
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 3.0e-241 840.1 820 59.5
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 3.7e-239 833.2 1593 36.3
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 3.8e-236 823.2 600 66.8
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.2e-231 807.4 552 72.1
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 4.4e-200 703.4 848 41.9
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 3.4e-168 597.4 429 69.0
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 3.6e-141 507.7 376 67.8
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 1.4e-137 495.7 329 75.7
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 3.1e-137 494.6 658 52.4
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 5.0e-135 487.3 611 52.4
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.0e-120 438.7 686 39.4
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 4.5e-112 411.0 897 31.1
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 2.8e-109 401.7 328 65.9
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.0e-103 383.3 529 53.1
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 6.2e-101 374.0 241 73.0
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 6.8e-100 370.5 247 67.2
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 7.3e-94 350.5 428 43.7
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.8e-92 345.9 216 74.1
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 9.2e-81 307.0 204 72.5
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.3e-78 298.1 177 76.8
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 1.3e-71 276.6 383 48.8
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 6.0e-64 251.1 153 75.8
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 5.3e-60 238.0 175 64.6
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 2.0e-51 209.5 213 46.0
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 8.4e-50 204.1 115 85.2
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 9.3e-49 200.7 427 41.9
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 3.4e-43 182.2 99 90.9
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 4.3e-38 165.2 128 59.4
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 8.5e-34 151.0 169 49.7
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 1.2e-32 147.1 123 57.7
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 2.3e-31 142.9 114 57.9
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 6.7e-31 141.4 185 47.6
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.1e-28 134.0 302 43.0
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 6.5e-26 124.8 102 59.8
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 2.5e-25 122.9 73 82.2
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 5.5e-25 121.7 219 39.7
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.7e-24 119.4 63 93.7
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.4e-23 117.1 93 64.5
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 1.5e-22 113.6 88 60.2
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 7.4e-22 111.3 74 70.3
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 3.7e-21 109.0 75 76.0
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.1e-20 107.5 57 86.0
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 9.1e-20 104.4 207 37.2
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 2.0e-19 103.2 300 33.7
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 2.2e-18 99.8 57 87.7
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 2.9e-18 99.4 76 63.2
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.0e-15 90.9 122 39.3
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 6.7e-15 88.2 58 69.0
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 9.7e-14 84.3 94 48.9
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.7e-13 83.6 50 84.0
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 6.3e-13 81.6 55 63.6
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.1e-12 80.9 52 76.9
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 5.3e-12 78.6 302 35.1
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 1.0e-10 74.3 44 70.5
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.6e-08 67.0 97 40.2
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 4.7e-08 65.5 57 56.1
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 1.4e-07 63.9 41 63.4
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 1.8e-07 63.5 110 39.1
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-06 60.8 102 31.4
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 5.7e-06 58.5 36 77.8
Rhsim12G0022600 Rhododendron simsii HOM05D004072 ORTHO05D005933 9.8e-06 57.8 49 63.3


User provided reference genes

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