Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01861 Erythranthe guttata HOM05D002431 ORTHO05D002543 8.6e-67 257.3 176 100.0
TAR627G0788 Trochodendron aralioides HOM05D002431 ORTHO05D002543 7.1e-29 131.3 234 39.3
SGA_v2.0_scaffold223G42825 Striga asiatica HOM05D002431 ORTHO05D002543 2.1e-20 103.2 126 55.6
Phvul.002G177800 Phaseolus vulgaris HOM05D002431 ORTHO05D002543 1.0e-19 100.9 234 35.9
Actinidia32345 Actinidia chinensis HOM05D002431 ORTHO05D002543 2.5e-18 96.3 233 42.1
Actinidia39591 Actinidia chinensis HOM05D002431 ORTHO05D002543 4.3e-18 95.5 233 33.9
Sed0007665 Sechium edule HOM05D002431 ORTHO05D002543 2.8e-17 92.8 229 33.6
ClCG01G024900 Citrullus lanatus HOM05D002431 ORTHO05D002543 1.1e-16 90.9 258 34.9
Migut.M00879 Erythranthe guttata HOM05D002431 ORTHO05D002543 1.4e-16 90.5 142 45.8
CSS0004223 Camellia sinensis var. sinensis HOM05D002431 ORTHO05D002543 2.4e-16 89.7 234 36.8
CSS0023204 Camellia sinensis var. sinensis HOM05D002431 ORTHO05D002543 2.4e-16 89.7 234 36.8
Duzib160G0180 Durio zibethinus HOM05D002431 ORTHO05D002543 2.6e-15 86.3 127 47.2
arahy.Tifrunner.gnm1.ann1.X1RNA0 Arachis hypogaea HOM05D002431 ORTHO05D002543 5.8e-15 85.1 234 36.3
Dinv32212 Davidia involucrata HOM05D002431 ORTHO05D002543 9.9e-15 84.3 61 75.4
FAN21G3882 Fragaria x ananassa HOM05D002431 ORTHO05D002543 1.3e-14 84.0 235 32.3
SalBow8G1983 Salvia bowleyana HOM05D002431 ORTHO05D002543 1.7e-14 83.6 129 49.6
Lalb_Chr13g0294021 Lupinus albus HOM05D002431 ORTHO05D002543 3.8e-14 82.4 231 40.3
MSTRG.7514 Avicennia marina HOM05D002431 ORTHO05D002543 8.4e-14 81.3 236 43.2
Cc09_g08760 Coffea canephora HOM05D002431 ORTHO05D002543 1.1e-13 80.9 234 35.0
MSTRG.16265 Avicennia marina HOM05D002431 ORTHO05D002543 1.4e-13 80.5 234 44.4
Actinidia03347 Actinidia chinensis HOM05D002431 ORTHO05D002543 2.4e-13 79.7 234 40.6
Glyma.08G102500 Glycine max HOM05D005632 ORTHO05D006870 3.2e-13 79.3 191 34.0
TWI73G0305 Tripterygium wilfordii HOM05D002431 ORTHO05D002543 5.4e-13 78.6 243 31.3
Lj4g0009016 Lotus japonicus HOM05D005632 ORTHO05D006870 7.1e-13 78.2 195 32.8
Lalb_Chr07g0187481 Lupinus albus HOM05D002431 ORTHO05D002543 7.1e-13 78.2 232 40.5
Migut.E00242 Erythranthe guttata HOM05D005632 ORTHO05D006870 1.2e-12 77.4 198 34.8
Manes.15G125100 Manihot esculenta HOM05D002431 ORTHO05D002543 1.6e-12 77.0 234 32.1
Atru.chr10.1072 Acer truncatum HOM05D002431 ORTHO05D002543 2.1e-12 76.6 128 48.4
arahy.Tifrunner.gnm1.ann1.XA2RWL Arachis hypogaea HOM05D002431 ORTHO05D002543 2.1e-12 76.6 119 43.7
DCAR_030330 Daucus carota HOM05D002431 ORTHO05D002543 6.0e-12 75.1 109 49.5
Zm00001eb070390 Zea mays HOM05D002431 ORTHO05D002543 1.0e-11 74.3 119 42.9
Oeu031315.1 Olea europaea HOM05D002431 ORTHO05D002543 1.8e-11 73.6 127 51.2
Hund17751 Selenicereus undatus HOM05D002431 ORTHO05D002543 1.8e-11 73.6 135 41.5
Prupe.4G085800 Prunus persica HOM05D002431 ORTHO05D002543 2.3e-11 73.2 230 31.7
QL05p055058 Quercus lobata HOM05D002431 ORTHO05D002543 2.3e-11 73.2 234 32.1
unitig_92.g28168 Utricularia gibba HOM05D002431 ORTHO05D002543 2.3e-11 73.2 248 38.7
AUR62002679 Chenopodium quinoa HOM05D002431 ORTHO05D002543 3.0e-11 72.8 120 46.7
Cc11_g03240 Coffea canephora HOM05D002431 ORTHO05D002543 3.9e-11 72.4 108 45.4
Glyma.05G145700 Glycine max HOM05D005632 ORTHO05D006870 3.9e-11 72.4 189 33.3
Sabra16G0236400 Salix brachista HOM05D002431 ORTHO05D002543 3.9e-11 72.4 50 74.0
EL10Ac8g19626 Beta vulgaris HOM05D002431 ORTHO05D002543 8.7e-11 71.2 121 40.5
VMungo0251G3265 Vigna mungo HOM05D005632 ORTHO05D006870 1.1e-10 70.9 190 32.6
Nitab4.5_0000315g0020 Nicotiana tabacum HOM05D002431 ORTHO05D002543 1.5e-10 70.5 229 41.9
GSVIVG01021550001 Vitis vinifera HOM05D002431 ORTHO05D002543 1.5e-10 70.5 232 36.2
Glyma.08G231800 Glycine max HOM05D002431 ORTHO05D002543 1.9e-10 70.1 244 36.9
CDE05G1253 Ceratophyllum demersum HOM05D002431 ORTHO05D002543 3.3e-10 69.3 229 30.1
Ciclev10004714m.g Citrus clementina HOM05D002431 ORTHO05D002543 5.6e-10 68.6 229 43.2
Nitab4.5_0005655g0020 Nicotiana tabacum HOM05D002431 ORTHO05D002543 5.6e-10 68.6 231 37.7
Peaxi162Scf00128g00929 Petunia axillaris HOM05D005632 ORTHO05D006870 5.6e-10 68.6 204 31.4
Duzib235G1098 Durio zibethinus HOM05D002431 ORTHO05D002543 7.4e-10 68.2 234 29.9
MD10G1258000 Malus domestica HOM05D002431 ORTHO05D002543 7.4e-10 68.2 227 30.8
Ca_18160_v3 Cicer arietinum L. HOM05D002431 ORTHO05D002543 9.6e-10 67.8 235 30.6
COL.COLO4_31008 Corchorus olitorius HOM05D002431 ORTHO05D002543 9.6e-10 67.8 233 36.1
Sp1g26180 Schrenkiella parvula HOM05D002431 ORTHO05D002543 9.6e-10 67.8 209 34.4
unitig_37.g12086 Utricularia gibba HOM05D002431 ORTHO05D002543 9.6e-10 67.8 235 40.0
Atru.chr11.1045 Acer truncatum HOM05D002431 ORTHO05D002543 1.6e-09 67.0 229 37.6
AUR62005576 Chenopodium quinoa HOM05D005632 ORTHO05D006870 1.6e-09 67.0 198 30.8
MELO3C007106.2 Cucumis melo HOM05D002431 ORTHO05D002543 1.6e-09 67.0 233 30.0
Hma1.2p1_0586F.1_g183850 Hydrangea macrophylla HOM05D002431 ORTHO05D002543 1.6e-09 67.0 234 31.2
Potri.001G358600 Populus trichocarpa HOM05D002431 ORTHO05D002543 1.6e-09 67.0 244 31.6
Prupe.1G342800 Prunus persica HOM05D002431 ORTHO05D002543 2.1e-09 66.6 223 36.3
VMungo0251G2807 Vigna mungo HOM05D002431 ORTHO05D002543 2.1e-09 66.6 234 32.5
VMungo0251G0662 Vigna mungo HOM05D002431 ORTHO05D002543 2.8e-09 66.2 230 37.0
GSVIVG01010242001 Vitis vinifera HOM05D002431 ORTHO05D002543 2.8e-09 66.2 109 51.4
Glyma.08G090800 Glycine max HOM05D002431 ORTHO05D002543 3.7e-09 65.9 230 36.1
Glyma.08G099900 Glycine max HOM05D002431 ORTHO05D002543 3.7e-09 65.9 234 37.2
QL03p041928 Quercus lobata HOM05D002431 ORTHO05D002543 3.7e-09 65.9 109 40.4
QL03p054693 Quercus lobata HOM05D005632 ORTHO05D006870 4.8e-09 65.5 207 28.0
Glyma.05G143500 Glycine max HOM05D002431 ORTHO05D002543 6.2e-09 65.1 234 35.0
PSO675G2568 Papaver somniferum HOM05D002431 ORTHO05D002543 8.1e-09 64.7 234 38.0
Ciclev10014853m.g Citrus clementina HOM05D002431 ORTHO05D002543 1.1e-08 64.3 121 44.6
CsaV3_6G052050 Cucumis sativus L. HOM05D002431 ORTHO05D002543 1.1e-08 64.3 233 29.6
Dinv28152 Davidia involucrata HOM05D002431 ORTHO05D002543 1.4e-08 63.9 109 41.3
Eucgr.D00265 Eucalyptus grandis HOM05D002431 ORTHO05D002543 1.4e-08 63.9 234 29.9
Lalb_Chr13g0294161 Lupinus albus HOM05D005632 ORTHO05D006870 1.4e-08 63.9 124 36.3
Phvul.002G186400 Phaseolus vulgaris HOM05D002431 ORTHO05D002543 1.4e-08 63.9 230 37.4
PGR083G0955 Punica granatum HOM05D002431 ORTHO05D002543 1.4e-08 63.9 137 39.4
FAN16G3322 Fragaria x ananassa HOM05D002431 ORTHO05D002543 1.8e-08 63.5 235 29.8
Gohir.A05G146300 Gossypium hirsutum HOM05D002431 ORTHO05D002543 1.8e-08 63.5 234 29.5
MBI18_g11217_MAGBIO Magnolia biondii HOM05D002431 ORTHO05D002543 1.8e-08 63.5 229 34.1
Nn3g18710 Nelumbo nucifera HOM05D002431 ORTHO05D002543 1.8e-08 63.5 229 41.5
Peaxi162Scf00465g00066 Petunia axillaris HOM05D002431 ORTHO05D002543 1.8e-08 63.5 233 40.8
TPR.G9577 Trifolium pratense HOM05D002431 ORTHO05D002543 1.8e-08 63.5 235 30.6
FAN12G2770 Fragaria x ananassa HOM05D008916 ORTHO05D002543 2.4e-08 63.2 196 36.7
Oeu006354.3 Olea europaea HOM05D002431 ORTHO05D002543 2.4e-08 63.2 198 42.4
vmacro03430 Vaccinium macrocarpon HOM05D002431 ORTHO05D002543 2.4e-08 63.2 130 42.3
FAN07G1606 Fragaria x ananassa HOM05D002431 ORTHO05D002543 3.1e-08 62.8 254 33.5
CSS0041267 Camellia sinensis var. sinensis HOM05D002431 ORTHO05D002543 4.0e-08 62.4 228 32.0
CiPaw.05G114600 Carya illinoinensis HOM05D005632 ORTHO05D006870 4.0e-08 62.4 195 30.3
FvH4_3g05020 Fragaria vesca HOM05D002431 ORTHO05D002543 4.0e-08 62.4 234 30.3
FAN11G3406 Fragaria x ananassa HOM05D002431 ORTHO05D002543 4.0e-08 62.4 234 30.3
Lj4g0021792 Lotus japonicus HOM05D002431 ORTHO05D002543 5.3e-08 62.0 245 31.4
Rhsim13G0118000 Rhododendron simsii HOM05D002431 ORTHO05D002543 5.3e-08 62.0 116 44.8
Thecc.06G144200 Theobroma cacao HOM05D002431 ORTHO05D002543 5.3e-08 62.0 127 40.9
FAN25G0203 Fragaria x ananassa HOM05D002431 ORTHO05D002543 6.9e-08 61.6 235 29.4
Gohir.D05G148600 Gossypium hirsutum HOM05D002431 ORTHO05D002543 6.9e-08 61.6 234 29.1
Gorai.009G152800 Gossypium raimondii HOM05D002431 ORTHO05D002543 6.9e-08 61.6 234 29.1
Medtr8g079482 Medicago truncatula HOM05D002431 ORTHO05D002543 6.9e-08 61.6 234 30.3
Pp3c9_7900 Physcomitrium patens HOM05D000276 ORTHO05D006204 6.9e-08 61.6 110 40.0
Potri.010G098000 Populus trichocarpa HOM05D002431 ORTHO05D002543 6.9e-08 61.6 228 36.8
Sed0000189 Sechium edule HOM05D002431 ORTHO05D002543 6.9e-08 61.6 229 29.3
MSTRG.522 Avicennia marina HOM05D005632 ORTHO05D006870 9.0e-08 61.2 195 29.7
Manes.17G074250 Manihot esculenta HOM05D002431 ORTHO05D002543 9.0e-08 61.2 124 41.1
RcHm_v2.0_Chr4g0446081 Rosa chinensis HOM05D002431 ORTHO05D002543 9.0e-08 61.2 225 41.3
Thhalv10007414m.g Eutrema salsugineum HOM05D002431 ORTHO05D002543 1.2e-07 60.8 225 32.4
MD05G1279300 Malus domestica HOM05D002431 ORTHO05D002543 1.2e-07 60.8 137 35.8
RcHm_v2.0_Chr5g0014951 Rosa chinensis HOM05D002431 ORTHO05D002543 1.2e-07 60.8 249 27.7
CANSAT35G0357 Cannabis sativa HOM05D002431 ORTHO05D002543 1.5e-07 60.5 235 33.6
Cfa000896 Carpinus fangiana HOM05D002431 ORTHO05D002543 1.5e-07 60.5 124 38.7
CDE05G0828 Ceratophyllum demersum HOM05D002431 ORTHO05D002543 1.5e-07 60.5 229 28.8
Duzib192G0720 Durio zibethinus HOM05D002431 ORTHO05D002543 1.5e-07 60.5 127 41.7
Oeu038678.1 Olea europaea HOM05D002431 ORTHO05D002543 1.5e-07 60.5 43 65.1
Lj2A322T64 Lonicera japonica HOM05D002431 ORTHO05D002543 2.0e-07 60.1 247 27.5
PSO541G1681 Papaver somniferum HOM05D002431 ORTHO05D002543 2.0e-07 60.1 127 39.4
DCAR_003886 Daucus carota HOM05D002431 ORTHO05D002543 2.6e-07 59.7 55 56.4
Sed0013249 Sechium edule HOM05D002431 ORTHO05D002543 2.6e-07 59.7 224 31.2
TAR382G0001 Trochodendron aralioides HOM05D002431 ORTHO05D002543 2.6e-07 59.7 229 41.5
A08p24520 Brassica napus HOM05D002431 ORTHO05D002543 3.4e-07 59.3 222 31.1
Potri.008G144300 Populus trichocarpa HOM05D002431 ORTHO05D002543 3.4e-07 59.3 123 37.4
TWI09G0860 Tripterygium wilfordii HOM05D002431 ORTHO05D002543 3.4e-07 59.3 127 37.0
MSTRG.10914 Avicennia marina HOM05D000276 ORTHO05D006204 4.5e-07 58.9 70 50.0
BcaC01g00183 Brassica carinata HOM05D002431 ORTHO05D002543 4.5e-07 58.9 222 31.5
C03p76670 Brassica napus HOM05D002431 ORTHO05D002543 4.5e-07 58.9 222 31.5
BolC3t19923H Brassica oleracea HOM05D002431 ORTHO05D002543 4.5e-07 58.9 222 31.5
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 4.5e-07 58.9 152 33.6
AT1G30320 Arabidopsis thaliana HOM05D002431 ORTHO05D002543 5.8e-07 58.5 221 30.8
BraA08t34408Z Brassica rapa HOM05D002431 ORTHO05D002543 5.8e-07 58.5 222 31.1
Oeu042062.1 Olea europaea HOM05D005632 ORTHO05D006870 5.8e-07 58.5 151 33.1
Peaxi162Scf00045g02428 Petunia axillaris HOM05D002431 ORTHO05D002543 5.8e-07 58.5 118 44.9
Psat7g078600 Pisum sativum HOM05D002431 ORTHO05D002543 5.8e-07 58.5 229 34.9
TAR624G0068 Trochodendron aralioides HOM05D000276 ORTHO05D006204 5.8e-07 58.5 96 38.5
Eucgr.J01777 Eucalyptus grandis HOM05D002431 ORTHO05D002543 7.6e-07 58.2 226 35.8
Atru.chr1.4144 Acer truncatum HOM05D000276 ORTHO05D006204 9.9e-07 57.8 70 47.1
CAN.G282.81 Capsicum annuum HOM05D002431 ORTHO05D002543 9.9e-07 57.8 109 39.4
AUR62030132 Chenopodium quinoa HOM05D002431 ORTHO05D002543 9.9e-07 57.8 120 40.8
THA.LOC104812681 Tarenaya hassleriana HOM05D002431 ORTHO05D002543 9.9e-07 57.8 230 32.2
THA.LOC104820668 Tarenaya hassleriana HOM05D002431 ORTHO05D002543 9.9e-07 57.8 233 33.9
FAN12G3126 Fragaria x ananassa HOM05D002431 ORTHO05D002543 1.3e-06 57.4 134 42.5
Lsat_1_v5_gn_7_27321 Lactuca sativa HOM05D002431 ORTHO05D002543 1.3e-06 57.4 232 31.9
Cfa003463 Carpinus fangiana HOM05D000276 ORTHO05D006204 1.7e-06 57.0 70 45.7
CiPaw.05G163000 Carya illinoinensis HOM05D002431 ORTHO05D002543 1.7e-06 57.0 109 38.5
ClCG07G014300 Citrullus lanatus HOM05D000276 ORTHO05D006204 1.7e-06 57.0 70 47.1
ClCG11G000810 Citrullus lanatus HOM05D002431 ORTHO05D002543 1.7e-06 57.0 212 34.0
Cc04_g00750 Coffea canephora HOM05D000276 ORTHO05D006204 1.7e-06 57.0 70 45.7
QL05p001260 Quercus lobata HOM05D000276 ORTHO05D006204 1.7e-06 57.0 70 47.1
AL1G44260 Arabidopsis lyrata HOM05D002431 ORTHO05D002543 2.2e-06 56.6 225 31.1
BraA09t39141Z Brassica rapa HOM05D002431 ORTHO05D002543 2.2e-06 56.6 226 30.5
Thecc.02G295500 Theobroma cacao HOM05D002431 ORTHO05D002543 2.2e-06 56.6 229 41.9
Ah.14g086280 Amaranthus hybridus HOM05D002205 ORTHO05D004847 2.9e-06 56.2 231 29.0
CiPaw.01G211700 Carya illinoinensis HOM05D000276 ORTHO05D006204 2.9e-06 56.2 70 45.7
Sed0014194 Sechium edule HOM05D002431 ORTHO05D002543 2.9e-06 56.2 137 32.8
SEGI_36040 Sequoiadendron giganteum HOM05D000276 ORTHO05D006204 2.9e-06 56.2 70 47.1
Thecc.06G129800 Theobroma cacao HOM05D000276 ORTHO05D006204 2.9e-06 56.2 70 45.7
TPR.G34762 Trifolium pratense HOM05D002431 ORTHO05D002543 2.9e-06 56.2 229 35.4
MSTRG.13321 Avicennia marina HOM05D005632 ORTHO05D006870 3.8e-06 55.8 204 27.9
Cpa.g.sc17.51 Carica papaya HOM05D002431 ORTHO05D002543 3.8e-06 55.8 196 30.1
Gohir.A10G044000 Gossypium hirsutum HOM05D002431 ORTHO05D002543 3.8e-06 55.8 234 31.6
Lalb_Chr17g0343241 Lupinus albus HOM05D000276 ORTHO05D006204 3.8e-06 55.8 70 44.3
Sabra01G0129700 Salix brachista HOM05D000276 ORTHO05D006204 3.8e-06 55.8 70 42.9
Hund18639 Selenicereus undatus HOM05D000276 ORTHO05D006204 3.8e-06 55.8 97 38.1
Sc17g0004790 Simmondsia chinensis HOM05D002431 ORTHO05D002543 3.8e-06 55.8 136 34.6
DCAR_007871 Daucus carota HOM05D002431 ORTHO05D002543 4.9e-06 55.5 207 39.6
MD16G1008100 Malus domestica HOM05D002431 ORTHO05D002543 4.9e-06 55.5 223 43.5
Manes.10G068300 Manihot esculenta HOM05D002431 ORTHO05D002543 4.9e-06 55.5 227 40.5
Psat7g086280 Pisum sativum HOM05D002431 ORTHO05D002543 4.9e-06 55.5 231 27.3
COL.COLO4_30861 Corchorus olitorius HOM05D000276 ORTHO05D006204 6.4e-06 55.1 70 44.3
Gohir.D10G045200 Gossypium hirsutum HOM05D002431 ORTHO05D002543 6.4e-06 55.1 235 34.5
Gorai.011G048100 Gossypium raimondii HOM05D002431 ORTHO05D002543 6.4e-06 55.1 235 34.5
Nn4g26635 Nelumbo nucifera HOM05D002431 ORTHO05D002543 6.4e-06 55.1 124 39.5
COL.COLO4_16621 Corchorus olitorius HOM05D002431 ORTHO05D002543 8.4e-06 54.7 124 44.4
Haze_05685 Corylus avellana HOM05D002431 ORTHO05D002543 8.4e-06 54.7 124 37.1
Lj1C1169T6 Lonicera japonica HOM05D002431 ORTHO05D002543 8.4e-06 54.7 129 43.4
Oeu059014.1 Olea europaea HOM05D000276 ORTHO05D006204 8.4e-06 54.7 70 44.3
RcHm_v2.0_Chr2g0147831 Rosa chinensis HOM05D000276 ORTHO05D006204 8.4e-06 54.7 70 45.7


User provided reference genes

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