Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 1.6e-152 542.7 269 100.0
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 3.3e-118 428.7 262 76.7
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.8e-116 422.9 264 74.2
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 1.8e-116 422.9 260 76.2
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.3e-116 422.5 267 75.7
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 4.0e-116 421.8 246 80.5
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 5.2e-116 421.4 248 79.4
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 2.0e-115 419.5 248 79.0
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 2.9e-114 415.6 270 71.1
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.9e-114 415.6 261 74.7
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 4.9e-114 414.8 271 73.4
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 8.4e-114 414.1 254 76.4
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 7.1e-113 411.0 248 77.8
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 2.7e-112 409.1 267 72.7
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 3.5e-112 408.7 266 71.8
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 4.6e-112 408.3 267 73.0
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 7.8e-112 407.5 268 72.0
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 5.1e-111 404.8 269 69.9
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 5.1e-111 404.8 273 72.2
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 5.1e-111 404.8 248 76.6
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.5e-110 403.3 238 81.5
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 7.3e-110 401.0 269 73.6
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 7.3e-110 401.0 267 71.9
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.6e-109 399.8 293 66.9
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 2.1e-109 399.4 267 71.5
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.1e-109 399.4 269 69.9
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 8.1e-109 397.5 242 76.9
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.4e-105 386.7 307 62.5
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 9.3e-105 384.0 256 72.3
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 3.9e-103 378.6 273 66.7
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 2.5e-102 375.9 258 67.8
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 2.8e-101 372.5 252 69.8
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 6.9e-100 367.9 269 63.9
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 8.4e-98 360.9 218 75.7
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 8.4e-98 360.9 240 69.6
PGR031G2232 Punica granatum HOM05D008272 ORTHO05D010429 2.1e-96 356.3 248 70.6
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 4.6e-96 355.1 248 66.5
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.0e-95 354.0 240 69.2
Haze_09670 Corylus avellana HOM05D008272 ORTHO05D010429 1.3e-93 347.1 260 65.0
MBI02_g22115_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 2.0e-91 339.7 269 61.7
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 4.5e-91 338.6 213 74.2
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 1.3e-90 337.0 190 82.6
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 2.9e-90 335.9 200 79.5
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 2.4e-89 332.8 216 74.1
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 3.7e-85 318.9 190 77.9
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 4.5e-75 285.4 177 77.4
MBI16_g12297_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 1.4e-68 263.8 192 67.7
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 3.6e-64 249.2 240 53.8
CAN.G337.128 Capsicum annuum HOM05D008272 ORTHO05D010429 2.6e-62 243.0 243 53.1
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 4.4e-62 242.3 147 76.2
Sc03g0008620 Simmondsia chinensis HOM05D008272 ORTHO05D010429 2.6e-59 233.0 141 75.9
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 5.9e-59 231.9 197 59.9
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 7.2e-57 224.9 141 75.2
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 1.6e-48 197.2 126 73.8
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 5.7e-46 188.7 115 74.8
MD11G1219100 Malus domestica HOM05D008272 ORTHO05D010429 7.2e-41 171.8 238 39.9
Cfa020968 Carpinus fangiana HOM05D008272 ORTHO05D010429 7.0e-20 102.1 61 72.1
MD03G1201900 Malus domestica HOM05D008272 ORTHO05D010429 7.8e-19 98.6 58 74.1
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.7e-18 97.4 220 31.8
Oeu020117.1 Olea europaea HOM05D008272 ORTHO05D010429 3.0e-18 96.7 84 61.9
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 1.9e-17 94.0 220 31.4
arahy.Tifrunner.gnm1.ann1.39PYJI Arachis hypogaea HOM05D008272 ORTHO05D010429 3.3e-17 93.2 108 50.9
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 5.6e-17 92.4 234 31.6
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 2.1e-16 90.5 210 31.4
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 3.6e-16 89.7 216 30.6
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 3.6e-16 89.7 192 32.8
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 4.7e-16 89.4 192 31.8
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 4.7e-16 89.4 155 32.9
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 6.2e-16 89.0 192 31.8
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 6.2e-16 89.0 192 31.8
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 6.2e-16 89.0 192 31.8
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 6.2e-16 89.0 192 32.8
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 6.2e-16 89.0 218 29.8
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.1e-15 88.2 192 31.8
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.1e-15 88.2 192 31.8
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.4e-15 87.8 192 31.8
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 1.4e-15 87.8 158 36.7
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.8e-15 87.4 220 29.5
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 2.3e-15 87.0 210 31.0
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 3.1e-15 86.7 223 32.3
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 3.1e-15 86.7 211 30.3
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 3.1e-15 86.7 150 32.0
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 4.0e-15 86.3 169 33.7
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.0e-15 86.3 142 35.2
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 4.0e-15 86.3 145 37.9
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 4.0e-15 86.3 220 29.5
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 5.2e-15 85.9 157 32.5
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 5.2e-15 85.9 142 34.5
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 5.2e-15 85.9 179 33.0
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 6.8e-15 85.5 191 28.8
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 6.8e-15 85.5 220 29.1
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 6.8e-15 85.5 196 30.1
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 8.9e-15 85.1 150 34.0
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 8.9e-15 85.1 160 31.2
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.2e-14 84.7 130 33.8
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 1.5e-14 84.3 191 31.4
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 1.5e-14 84.3 192 31.8
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 2.0e-14 84.0 236 30.5
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 2.0e-14 84.0 212 30.2
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.0e-14 84.0 181 28.7
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 2.6e-14 83.6 217 29.5
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 3.4e-14 83.2 197 31.5
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 3.4e-14 83.2 196 31.1
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 3.4e-14 83.2 220 28.6
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 3.4e-14 83.2 220 28.6
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 4.4e-14 82.8 213 29.1
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 5.8e-14 82.4 210 29.0
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 5.8e-14 82.4 197 31.0
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 5.8e-14 82.4 210 29.5
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 7.5e-14 82.0 210 29.5
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 7.5e-14 82.0 205 30.2
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 7.5e-14 82.0 220 28.2
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 7.5e-14 82.0 172 30.2
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 9.8e-14 81.6 162 32.7
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 1.3e-13 81.3 194 29.4
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 1.3e-13 81.3 162 32.1
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.3e-13 81.3 157 32.5
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.7e-13 80.9 191 29.3
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 1.7e-13 80.9 189 31.2
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 2.2e-13 80.5 197 32.0
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 2.2e-13 80.5 191 28.8
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 2.9e-13 80.1 212 29.2
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 2.9e-13 80.1 198 29.3
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 2.9e-13 80.1 208 29.3
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 2.9e-13 80.1 189 30.2
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 2.9e-13 80.1 131 32.8
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 3.7e-13 79.7 186 29.0
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 3.7e-13 79.7 134 35.1
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 3.7e-13 79.7 147 32.7
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 4.9e-13 79.3 210 27.1
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 4.9e-13 79.3 214 27.1
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 6.4e-13 79.0 189 29.6
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 6.4e-13 79.0 201 29.9
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 6.4e-13 79.0 198 32.3
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 6.4e-13 79.0 189 30.2
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 8.3e-13 78.6 198 29.8
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 8.3e-13 78.6 198 29.3
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 8.3e-13 78.6 143 33.6
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 8.3e-13 78.6 163 28.2
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 8.3e-13 78.6 196 31.1
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 1.9e-12 77.4 205 29.3
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 1.9e-12 77.4 198 28.8
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 2.4e-12 77.0 198 29.3
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 2.4e-12 77.0 212 27.8
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 2.4e-12 77.0 137 32.1
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 3.2e-12 76.6 191 27.7
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 3.2e-12 76.6 210 28.1
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 4.1e-12 76.3 208 26.9
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 4.1e-12 76.3 217 28.6
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 4.1e-12 76.3 183 30.1
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 5.4e-12 75.9 198 27.8
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 7.0e-12 75.5 184 29.3
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 7.0e-12 75.5 184 29.3
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 7.0e-12 75.5 201 27.9
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 9.2e-12 75.1 220 29.5
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 9.2e-12 75.1 191 29.3
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 1.2e-11 74.7 183 28.4
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 2.0e-11 73.9 191 28.3
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.0e-11 73.9 191 28.3
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 3.5e-11 73.2 195 27.7
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 3.5e-11 73.2 191 28.3
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.5e-11 73.2 191 28.3
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 4.6e-11 72.8 217 28.1
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 4.6e-11 72.8 190 27.9
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 6.0e-11 72.4 187 27.3
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 7.8e-11 72.0 184 29.3
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 7.8e-11 72.0 192 28.1
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.3e-10 71.2 191 28.3
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.3e-10 71.2 191 28.3
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 2.3e-10 70.5 191 27.7
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 2.3e-10 70.5 191 27.7
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 3.9e-10 69.7 217 26.7
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 6.6e-10 68.9 239 25.1
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.1e-09 68.2 138 31.9
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 1.1e-09 68.2 194 27.8
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 9.5e-09 65.1 229 24.5
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 8.1e-08 62.0 74 39.2
Gohir.A01G117200 Gossypium hirsutum HOM05D003844 ORTHO05D004534 9.9e-06 55.1 209 25.8
Gorai.002G129600 Gossypium raimondii HOM05D003844 ORTHO05D004534 9.9e-06 55.1 209 25.8


User provided reference genes

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