Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 0.0e+00 1721.8 899 100.0
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 0.0e+00 1226.8 905 69.4
Oeu041839.1 Olea europaea HOM05D005193 ORTHO05D006316 5.4e-274 948.0 756 64.3
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 5.2e-269 931.4 911 54.0
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 1.4e-266 923.3 899 53.8
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 4.1e-266 921.8 881 55.2
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 6.6e-264 914.4 874 54.5
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 5.2e-253 878.2 899 52.5
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 2.6e-252 875.9 953 49.6
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 3.4e-252 875.5 859 53.3
Hma1.2p1_0036F.1_g023390 Hydrangea macrophylla HOM05D005193 ORTHO05D006316 5.8e-252 874.8 870 53.3
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 5.8e-252 874.8 900 52.4
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 6.4e-251 871.3 903 50.8
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 2.4e-250 869.4 897 51.6
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 1.6e-249 866.7 896 50.8
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 6.0e-249 864.8 908 50.0
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 7.8e-249 864.4 900 50.8
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 7.3e-247 857.8 901 50.4
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 7.3e-247 857.8 900 50.6
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 9.5e-247 857.4 903 50.3
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 1.2e-246 857.1 901 50.8
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 6.2e-246 854.7 900 49.4
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 1.1e-245 854.0 900 50.3
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 8.9e-245 850.9 917 48.9
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 5.8e-244 848.2 918 50.0
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 9.9e-244 847.4 896 50.2
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 3.8e-243 845.5 898 50.3
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 9.2e-242 840.9 878 51.0
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 6.0e-241 838.2 898 49.9
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 7.8e-241 837.8 898 50.2
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 8.7e-240 834.3 902 49.9
HanXRQChr11g0335911 Helianthus annuus HOM05D005193 ORTHO05D006316 1.1e-239 833.9 851 52.2
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 1.9e-239 833.2 905 49.5
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 1.2e-238 830.5 857 51.3
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 3.6e-238 828.9 896 49.4
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 4.4e-236 822.0 897 50.2
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 5.8e-236 821.6 897 49.2
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 2.4e-234 816.2 888 49.3
Manes.15G068700 Manihot esculenta HOM05D005193 ORTHO05D006316 5.4e-234 815.1 764 53.9
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 1.6e-233 813.5 897 49.3
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 2.1e-233 813.1 898 49.0
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 3.5e-233 812.4 898 48.8
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 1.3e-232 810.4 897 48.3
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 5.6e-231 805.1 912 48.6
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 1.6e-230 803.5 897 48.9
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 2.1e-230 803.1 940 48.1
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 3.6e-230 802.4 897 48.2
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 1.4e-229 800.4 907 46.9
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 1.8e-229 800.0 906 47.4
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 1.2e-228 797.3 907 47.5
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 4.2e-226 788.9 914 46.5
Haze_09711 Corylus avellana HOM05D005193 ORTHO05D006316 7.1e-226 788.1 878 48.3
TPR.G2822 Trifolium pratense HOM05D005193 ORTHO05D006316 4.0e-221 772.3 885 48.0
GSVIVG01037690001 Vitis vinifera HOM05D005193 ORTHO05D006316 6.9e-221 771.5 715 54.5
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 1.4e-218 763.8 890 45.8
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 5.1e-216 755.4 898 46.5
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 8.7e-216 754.6 980 44.8
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 8.7e-216 754.6 898 46.2
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 1.6e-214 750.4 895 45.7
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 2.4e-213 746.5 899 45.8
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 3.1e-213 746.1 912 45.5
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 4.0e-213 745.7 906 45.8
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 2.0e-212 743.4 904 45.4
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 2.3e-208 729.9 899 45.1
FvH4_3g23170 Fragaria vesca HOM05D005193 ORTHO05D006316 1.1e-205 721.1 743 51.4
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 1.2e-204 717.6 904 44.6
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 1.5e-204 717.2 903 45.0
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 2.9e-203 713.0 905 44.1
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 8.5e-203 711.4 850 46.4
FAN25G2894 Fragaria x ananassa HOM05D005193 ORTHO05D006316 7.2e-202 708.4 936 43.9
Eucgr.F03483 Eucalyptus grandis HOM05D005193 ORTHO05D006316 2.1e-193 680.2 766 47.9
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 8.8e-192 674.9 917 43.5
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 5.3e-189 665.6 899 42.2
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 6.7e-184 648.7 935 41.6
Peaxi162Scf00660g00118 Petunia axillaris HOM05D005193 ORTHO05D006316 2.5e-178 630.2 645 51.5
AUR62020399 Chenopodium quinoa HOM05D005193 ORTHO05D006316 8.8e-176 621.7 839 42.8
AUR62015820 Chenopodium quinoa HOM05D005193 ORTHO05D006316 2.6e-175 620.2 897 42.0
HPP92_008858 Vanilla planifolia HOM05D005193 ORTHO05D006316 1.9e-170 604.0 858 41.1
ClCG09G010950 Citrullus lanatus HOM05D005193 ORTHO05D006316 5.4e-157 559.3 952 38.1
Hund02018 Selenicereus undatus HOM05D005193 ORTHO05D006316 2.1e-153 547.4 965 36.2
Cpa.g.sc12.274 Carica papaya HOM05D005193 ORTHO05D006316 9.8e-151 538.5 628 46.5
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 5.0e-147 526.2 502 54.0
SMO115G0237 Selaginella moellendorffii HOM05D005193 ORTHO05D006316 4.1e-141 506.5 905 35.8
Mapoly0038s0063 Marchantia polymorpha HOM05D005193 ORTHO05D006316 5.4e-141 506.1 901 35.6
Pp3c16_8580 Physcomitrium patens HOM05D005193 ORTHO05D006316 2.7e-140 503.8 850 37.2
Nitab4.5_0000168g0220 Nicotiana tabacum HOM05D005193 ORTHO05D006316 6.2e-137 492.7 512 51.4
Lalb_Chr17g0348621 Lupinus albus HOM05D005193 ORTHO05D006316 1.4e-133 481.5 501 50.5
CBR_g49709 Chara braunii HOM05D005193 ORTHO05D000048 3.9e-115 420.2 910 31.6
CSS0020168 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 5.1e-115 419.9 480 49.0
arahy.Tifrunner.gnm1.ann1.6PV7EE Arachis hypogaea HOM05D005193 ORTHO05D006316 3.6e-113 413.7 434 51.4
AagrBONN_evm.TU.Sc2ySwM_344.2169 Anthoceros agrestis HOM05D005193 ORTHO05D006316 5.1e-107 393.3 651 38.9
SalBow8G4471 Salvia bowleyana HOM05D005193 ORTHO05D006316 8.1e-105 386.0 448 50.0
Nitab4.5_0003450g0040 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.8e-104 384.8 466 47.4
Lj1C877G15 Lonicera japonica HOM05D005193 ORTHO05D006316 4.5e-103 380.2 415 48.4
ATR0585G046 Amborella trichopoda HOM05D005193 ORTHO05D006316 2.3e-91 341.3 359 48.5
Lalb_Chr17g0348631 Lupinus albus HOM05D005193 ORTHO05D006316 3.4e-87 327.4 381 48.3
CDE02G4624 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 7.4e-82 309.7 370 46.5
Nitab4.5_0003450g0030 Nicotiana tabacum HOM05D005193 ORTHO05D006316 3.0e-75 287.7 391 42.2
arahy.Tifrunner.gnm1.ann1.89LBMG Arachis hypogaea HOM05D005193 ORTHO05D006316 3.8e-70 270.8 316 46.5
Lj1C877G9 Lonicera japonica HOM05D005193 ORTHO05D006316 1.0e-67 262.7 270 53.0
CDE02G0254 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 1.6e-47 195.7 283 42.4
arahy.Tifrunner.gnm1.ann1.DP08C5 Arachis hypogaea HOM05D005193 ORTHO05D006316 4.3e-45 187.6 251 45.0
arahy.Tifrunner.gnm1.ann1.SW2PFC Arachis hypogaea HOM05D005193 ORTHO05D006316 4.3e-45 187.6 251 45.0
Nitab4.5_0000168g0230 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.6e-44 185.7 196 47.4
CAN.G1219.3 Capsicum annuum HOM05D005193 ORTHO05D006316 8.0e-44 183.3 183 47.5
AUR62015822 Chenopodium quinoa HOM05D005193 ORTHO05D006316 8.3e-41 173.3 527 27.1
Solyc12g005090.3 Solanum lycopersicum HOM05D005193 ORTHO05D006316 2.3e-38 165.2 188 45.7
Lsat_1_v5_gn_6_67380 Lactuca sativa HOM05D005193 ORTHO05D006316 2.1e-36 158.7 192 46.9
Lsat_1_v5_gn_9_67960 Lactuca sativa HOM05D005193 ORTHO05D006316 2.1e-36 158.7 192 46.9
CDE02G4589 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 1.3e-30 139.4 252 35.3
Gorai.011G223800 Gossypium raimondii HOM05D005193 ORTHO05D006316 1.2e-28 132.9 157 41.4
ATR0585G123 Amborella trichopoda HOM05D005193 ORTHO05D006316 1.2e-26 126.3 174 43.1
Peaxi162Scf00660g00119 Petunia axillaris HOM05D005193 ORTHO05D006316 4.1e-24 117.9 140 42.9
CAN.G1219.2 Capsicum annuum HOM05D005193 ORTHO05D006316 1.3e-22 112.8 96 54.2
CDE02G0065 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 1.3e-22 112.8 215 33.0
SalBow8G0199 Salvia bowleyana HOM05D005193 ORTHO05D006316 5.1e-22 110.9 91 63.7
AagrBONN_evm.TU.Sc2ySwM_362.1473 Anthoceros agrestis HOM05D005193 ORTHO05D006316 4.3e-21 107.8 97 54.6
Sabra06G0024500 Salix brachista HOM05D005193 ORTHO05D006316 1.6e-20 105.9 84 59.5
Gohir.D10G199632 Gossypium hirsutum HOM05D005193 ORTHO05D006316 1.8e-19 102.4 135 40.0
Sabra16G0098300 Salix brachista HOM05D005193 ORTHO05D006316 1.8e-19 102.4 81 60.5
EL10Ac4g07765 Beta vulgaris HOM05D005193 ORTHO05D006316 3.7e-17 94.7 186 34.4
Oeu041837.1 Olea europaea HOM05D005193 ORTHO05D006316 3.7e-17 94.7 85 60.0
CSS0028155 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 3.5e-15 88.2 87 56.3
CSS0039097 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 3.5e-15 88.2 87 56.3
Cpa.g.sc12.275 Carica papaya HOM05D005193 ORTHO05D006316 6.0e-15 87.4 94 51.1
Gorai.001G274400 Gossypium raimondii HOM05D005193 ORTHO05D006316 2.3e-14 85.5 122 36.9
Gohir.D08G017066 Gossypium hirsutum HOM05D005193 ORTHO05D006316 2.1e-12 79.0 75 49.3
CSS0047254 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 2.8e-12 78.6 202 30.7
SEGI_35263 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 1.5e-10 72.8 61 49.2
GSVIVG01037691001 Vitis vinifera HOM05D005193 ORTHO05D006316 3.4e-10 71.6 113 44.2
Haze_09712 Corylus avellana HOM05D005193 ORTHO05D006316 9.9e-10 70.1 112 42.9
arahy.Tifrunner.gnm1.ann1.BLY3DW Arachis hypogaea HOM05D005193 ORTHO05D006316 1.3e-09 69.7 80 48.8
Cpa.g.sc12.273 Carica papaya HOM05D005193 ORTHO05D006316 1.3e-09 69.7 120 41.7
Aqoxy4G00029 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 1.7e-09 69.3 87 41.4
ATR0585G071 Amborella trichopoda HOM05D005193 ORTHO05D006316 1.4e-08 66.2 121 30.6
Eucgr.F03486 Eucalyptus grandis HOM05D005193 ORTHO05D006316 9.3e-08 63.5 115 38.3
TPR.G2800 Trifolium pratense HOM05D005193 ORTHO05D006316 2.3e-06 58.9 118 39.8


User provided reference genes

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