Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01709 Erythranthe guttata HOM05D002698 ORTHO05D002903 4.6e-76 288.1 180 100.0
MSTRG.6959 Avicennia marina HOM05D002698 ORTHO05D002903 1.5e-29 133.7 161 57.1
SalBow8G3467 Salvia bowleyana HOM05D002698 ORTHO05D002903 9.2e-24 114.4 104 54.8
Peaxi162Scf00339g00114 Petunia axillaris HOM05D002698 ORTHO05D002903 4.0e-19 99.0 98 54.1
Nitab4.5_0000168g0050 Nicotiana tabacum HOM05D002698 ORTHO05D002903 5.2e-19 98.6 104 51.9
Nitab4.5_0005833g0020 Nicotiana tabacum HOM05D002698 ORTHO05D002903 5.2e-19 98.6 106 50.9
Ciclev10009632m.g Citrus clementina HOM05D002698 ORTHO05D002903 4.4e-18 95.5 118 50.0
Haze_09745 Corylus avellana HOM05D002698 ORTHO05D002903 3.2e-16 89.4 111 45.0
CiPaw.12G133600 Carya illinoinensis HOM05D002698 ORTHO05D002903 5.4e-16 88.6 112 46.4
THA.LOC104817682 Tarenaya hassleriana HOM05D002698 ORTHO05D002903 1.2e-15 87.4 96 49.0
Rhsim04G0016500 Rhododendron simsii HOM05D002698 ORTHO05D002903 4.6e-15 85.5 102 53.9
PGSC0003DMG400012850 Solanum tuberosum HOM05D002698 ORTHO05D002903 4.6e-15 85.5 94 48.9
Cpa.g.sc284.6 Carica papaya HOM05D002698 ORTHO05D002903 5.9e-15 85.1 103 50.5
Manes.03G136700 Manihot esculenta HOM05D002698 ORTHO05D002903 5.9e-15 85.1 107 44.9
CAN.G1192.2 Capsicum annuum HOM05D002698 ORTHO05D002903 7.8e-15 84.7 87 51.7
BcaB01g04349 Brassica carinata HOM05D002698 ORTHO05D002903 1.3e-14 84.0 108 45.4
FAN21G0868 Fragaria x ananassa HOM05D002698 ORTHO05D002903 3.0e-14 82.8 105 45.7
Sopen12g007360 Solanum pennellii HOM05D002698 ORTHO05D002903 3.0e-14 82.8 94 47.9
FAN16G3366 Fragaria x ananassa HOM05D002698 ORTHO05D002903 3.9e-14 82.4 105 44.8
Solyc12g014480.2 Solanum lycopersicum HOM05D002698 ORTHO05D002903 3.9e-14 82.4 94 46.8
TWI39G1090 Tripterygium wilfordii HOM05D002698 ORTHO05D002903 3.9e-14 82.4 129 38.0
MELO3C013128.2 Cucumis melo HOM05D002698 ORTHO05D002903 6.6e-14 81.6 100 43.0
CsaV3_7G019960 Cucumis sativus L. HOM05D002698 ORTHO05D002903 6.6e-14 81.6 100 43.0
TWI38G1972 Tripterygium wilfordii HOM05D002698 ORTHO05D002903 8.6e-14 81.3 133 35.3
DCAR_013196 Daucus carota HOM05D002698 ORTHO05D002903 1.1e-13 80.9 95 55.8
Cfa020278 Carpinus fangiana HOM05D002698 ORTHO05D002903 1.5e-13 80.5 110 40.0
FAN25G0423 Fragaria x ananassa HOM05D002698 ORTHO05D002903 1.5e-13 80.5 105 43.8
unitig_85.g27333 Utricularia gibba HOM05D002698 ORTHO05D002903 2.5e-13 79.7 90 51.1
GSVIVG01037721001 Vitis vinifera HOM05D002698 ORTHO05D002903 2.5e-13 79.7 114 40.4
MD11G1209600 Malus domestica HOM05D002698 ORTHO05D002903 3.3e-13 79.3 171 34.5
ClCG09G011070 Citrullus lanatus HOM05D002698 ORTHO05D002903 4.3e-13 79.0 95 44.2
RcHm_v2.0_Chr5g0041531 Rosa chinensis HOM05D002698 ORTHO05D002903 4.3e-13 79.0 110 42.7
Cc05_g14290 Coffea canephora HOM05D002698 ORTHO05D002903 5.6e-13 78.6 104 39.4
Dinv22233 Davidia involucrata HOM05D002698 ORTHO05D002903 7.3e-13 78.2 109 50.5
Duzib170G0123 Durio zibethinus HOM05D002698 ORTHO05D002903 9.5e-13 77.8 126 38.9
Sabra11G0080100 Salix brachista HOM05D002698 ORTHO05D002903 9.5e-13 77.8 100 39.0
vmacro09691 Vaccinium macrocarpon HOM05D002698 ORTHO05D002903 1.2e-12 77.4 93 46.2
CARHR268570 Cardamine hirsuta HOM05D002698 ORTHO05D002903 1.6e-12 77.0 115 40.0
Potri.001G356400 Populus trichocarpa HOM05D002698 ORTHO05D002903 2.1e-12 76.6 106 50.0
Sabra11G0074600 Salix brachista HOM05D002698 ORTHO05D002903 2.1e-12 76.6 100 38.0
C03p16590 Brassica napus HOM05D002698 ORTHO05D002903 2.8e-12 76.3 108 43.5
Carub.0008s1556 Capsella rubella HOM05D002698 ORTHO05D002903 2.8e-12 76.3 119 40.3
FvH4_3g23530 Fragaria vesca HOM05D002698 ORTHO05D002903 2.8e-12 76.3 105 41.9
FAN11G0238 Fragaria x ananassa HOM05D002698 ORTHO05D002903 2.8e-12 76.3 105 41.9
Thhalv10014813m.g Eutrema salsugineum HOM05D002698 ORTHO05D002903 3.6e-12 75.9 123 41.5
MD03G1193400 Malus domestica HOM05D002698 ORTHO05D002903 3.6e-12 75.9 126 38.1
Sc03g0008330 Simmondsia chinensis HOM05D002698 ORTHO05D002903 3.6e-12 75.9 119 38.7
SGA_v2.0_scaffold171G38909 Striga asiatica HOM05D000967 ORTHO05D000796 3.6e-12 75.9 87 48.3
A03p14180 Brassica napus HOM05D002698 ORTHO05D002903 4.7e-12 75.5 108 42.6
Hma1.2p1_0036F.1_g023130 Hydrangea macrophylla HOM05D002698 ORTHO05D002903 4.7e-12 75.5 116 37.1
Atru.chr2.3528 Acer truncatum HOM05D002698 ORTHO05D002903 6.2e-12 75.1 173 34.7
AL8G30760 Arabidopsis lyrata HOM05D002698 ORTHO05D002903 6.2e-12 75.1 117 40.2
Prupe.4G223100 Prunus persica HOM05D002698 ORTHO05D002903 6.2e-12 75.1 133 37.6
Sp6g17140 Schrenkiella parvula HOM05D002698 ORTHO05D002903 6.2e-12 75.1 123 40.7
BcaB08g35883 Brassica carinata HOM05D002698 ORTHO05D002903 8.0e-12 74.7 109 41.3
AT5G55210 Arabidopsis thaliana HOM05D002698 ORTHO05D002903 1.1e-11 74.3 118 38.1
BolC3t14077H Brassica oleracea HOM05D002698 ORTHO05D002903 1.4e-11 73.9 108 41.7
CANSAT11G0690 Cannabis sativa HOM05D002698 ORTHO05D002903 1.4e-11 73.9 107 50.5
Aa31LG3G11200 Aethionema arabicum HOM05D002698 ORTHO05D002903 1.8e-11 73.6 106 44.3
BraA03t10719Z Brassica rapa HOM05D002698 ORTHO05D002903 1.8e-11 73.6 108 41.7
Atru.chr2.3548 Acer truncatum HOM05D002698 ORTHO05D002903 3.1e-11 72.8 173 34.1
Manes.15G066401 Manihot esculenta HOM05D002698 ORTHO05D002903 3.1e-11 72.8 90 43.3
BraA10t43341Z Brassica rapa HOM05D002698 ORTHO05D002903 4.0e-11 72.4 99 50.5
COL.COLO4_09732 Corchorus olitorius HOM05D002698 ORTHO05D002903 4.0e-11 72.4 111 43.2
Gohir.A01G084400 Gossypium hirsutum HOM05D002698 ORTHO05D002903 5.2e-11 72.0 103 45.6
Gohir.D01G070800 Gossypium hirsutum HOM05D002698 ORTHO05D002903 5.2e-11 72.0 103 45.6
Gorai.002G093500 Gossypium raimondii HOM05D002698 ORTHO05D002903 5.2e-11 72.0 103 45.6
HanXRQChr03g0076851 Helianthus annuus HOM05D002698 ORTHO05D002903 5.2e-11 72.0 110 54.5
BcaC04g20259 Brassica carinata HOM05D002698 ORTHO05D002903 6.8e-11 71.6 108 41.7
A10p12480 Brassica napus HOM05D002698 ORTHO05D002903 6.8e-11 71.6 104 52.9
BolC9t57449H Brassica oleracea HOM05D002698 ORTHO05D002903 6.8e-11 71.6 108 41.7
Medtr3g054230 Medicago truncatula HOM05D002698 ORTHO05D002903 6.8e-11 71.6 163 42.3
BcaC01g06354 Brassica carinata HOM05D002698 ORTHO05D002903 8.9e-11 71.2 97 43.3
Lsat_1_v5_gn_9_91980 Lactuca sativa HOM05D002698 ORTHO05D002903 1.2e-10 70.9 103 57.3
C09p45780 Brassica napus HOM05D002698 ORTHO05D002903 2.6e-10 69.7 103 46.6
BraA01t01313Z Brassica rapa HOM05D002698 ORTHO05D002903 2.6e-10 69.7 120 33.3
HanXRQChr13g0408241 Helianthus annuus HOM05D002698 ORTHO05D002903 3.4e-10 69.3 90 44.4
QL08p007453 Quercus lobata HOM05D002698 ORTHO05D002903 3.4e-10 69.3 128 44.5
Dinv40793 Davidia involucrata HOM05D002698 ORTHO05D002903 4.4e-10 68.9 98 52.0
Oeu005987.1 Olea europaea HOM05D002698 ORTHO05D002903 9.8e-10 67.8 161 33.5
PGR031G2414 Punica granatum HOM05D002698 ORTHO05D002903 1.3e-09 67.4 119 38.7
DCAR_027850 Daucus carota HOM05D002698 ORTHO05D002903 2.9e-09 66.2 103 38.8
Nitab4.5_0013359g0020 Nicotiana tabacum HOM05D002698 ORTHO05D002903 3.7e-09 65.9 140 32.9
arahy.Tifrunner.gnm1.ann1.RXI58C Arachis hypogaea HOM05D002698 ORTHO05D002903 4.9e-09 65.5 181 32.6
Ca_14766_v3 Cicer arietinum L. HOM05D002698 ORTHO05D002903 4.9e-09 65.5 166 38.0
Thecc.07G028400 Theobroma cacao HOM05D002698 ORTHO05D002903 4.9e-09 65.5 133 42.1
Peaxi162Scf00442g00527 Petunia axillaris HOM05D002698 ORTHO05D002903 6.4e-09 65.1 108 34.3
CSS0041917 Camellia sinensis var. sinensis HOM05D002698 ORTHO05D002903 8.3e-09 64.7 131 42.7
FAN21G0791 Fragaria x ananassa HOM05D002698 ORTHO05D002903 8.3e-09 64.7 112 36.6
CSS0009579 Camellia sinensis var. sinensis HOM05D002698 ORTHO05D002903 1.1e-08 64.3 129 42.6
ECA240G4014 Erigeron canadensis HOM05D002698 ORTHO05D002903 1.1e-08 64.3 110 50.9
Nitab4.5_0008006g0040 Nicotiana tabacum HOM05D002698 ORTHO05D002903 1.1e-08 64.3 136 31.6
Oeu002757.1 Olea europaea HOM05D002698 ORTHO05D002903 1.4e-08 63.9 112 33.9
Sc05g0009570 Simmondsia chinensis HOM05D002698 ORTHO05D002903 1.4e-08 63.9 129 31.0
arahy.Tifrunner.gnm1.ann1.REHI4N Arachis hypogaea HOM05D002698 ORTHO05D002903 1.9e-08 63.5 114 43.0
Migut.M01386 Erythranthe guttata HOM05D002698 ORTHO05D002903 1.9e-08 63.5 144 30.6
Psat5g176680 Pisum sativum HOM05D002698 ORTHO05D002903 1.9e-08 63.5 105 38.1
BcaC09g51141 Brassica carinata HOM05D002698 ORTHO05D002903 2.4e-08 63.2 126 31.7
C01p16560 Brassica napus HOM05D002698 ORTHO05D002903 2.4e-08 63.2 126 31.7
BolC1t01606H Brassica oleracea HOM05D002698 ORTHO05D002903 2.4e-08 63.2 126 31.7
Peaxi162Scf00990g00122 Petunia axillaris HOM05D002698 ORTHO05D002903 4.1e-08 62.4 118 33.9
Solyc04g014710.3 Solanum lycopersicum HOM05D002698 ORTHO05D002903 4.1e-08 62.4 134 30.6
Sopen04g006820 Solanum pennellii HOM05D002698 ORTHO05D002903 4.1e-08 62.4 134 30.6
PGSC0003DMG400023559 Solanum tuberosum HOM05D002698 ORTHO05D002903 4.1e-08 62.4 129 31.0
THA.LOC104806327 Tarenaya hassleriana HOM05D002698 ORTHO05D002903 4.1e-08 62.4 190 29.5
BolC7t45681H Brassica oleracea HOM05D002698 ORTHO05D002903 7.0e-08 61.6 209 31.6
FAN25G3628 Fragaria x ananassa HOM05D002698 ORTHO05D002903 7.0e-08 61.6 114 35.1
A01p13680 Brassica napus HOM05D002698 ORTHO05D002903 9.2e-08 61.2 127 35.4
Duzib213G0648 Durio zibethinus HOM05D002698 ORTHO05D002903 9.2e-08 61.2 118 34.7
A03p53460 Brassica napus HOM05D002698 ORTHO05D002903 1.2e-07 60.8 126 33.3
FvH4_3g01090 Fragaria vesca HOM05D002698 ORTHO05D002903 1.2e-07 60.8 108 37.0
Manes.16G001101 Manihot esculenta HOM05D002698 ORTHO05D002903 1.2e-07 60.8 133 32.3
Rhsim02G0103900 Rhododendron simsii HOM05D002698 ORTHO05D002903 1.2e-07 60.8 187 34.2
BraA03t14412Z Brassica rapa HOM05D002698 ORTHO05D002903 1.6e-07 60.5 127 33.1
Lj6g0023919 Lotus japonicus HOM05D002698 ORTHO05D002903 1.6e-07 60.5 124 42.7
Nitab4.5_0001109g0020 Nicotiana tabacum HOM05D002698 ORTHO05D002903 1.6e-07 60.5 106 33.0
Hma1.2p1_0660F.1_g197560 Hydrangea macrophylla HOM05D002698 ORTHO05D002903 2.0e-07 60.1 135 37.0
C07p51790 Brassica napus HOM05D002698 ORTHO05D002903 2.7e-07 59.7 208 31.7
Lalb_Chr18g0050301 Lupinus albus HOM05D002698 ORTHO05D002903 2.7e-07 59.7 120 39.2
TPR.G13112 Trifolium pratense HOM05D002698 ORTHO05D002903 2.7e-07 59.7 121 43.0
BcaNung03745 Brassica carinata HOM05D002698 ORTHO05D002903 3.5e-07 59.3 127 34.6
DCAR_002218 Daucus carota HOM05D002698 ORTHO05D002903 3.5e-07 59.3 109 37.6
vmacro15775 Vaccinium macrocarpon HOM05D002698 ORTHO05D002903 3.5e-07 59.3 118 44.1
Lalb_Chr18g0056901 Lupinus albus HOM05D002698 ORTHO05D002903 4.6e-07 58.9 117 36.8
MD05G1356800 Malus domestica HOM05D002698 ORTHO05D002903 4.6e-07 58.9 135 30.4
Peaxi162Scf00558g00219 Petunia axillaris HOM05D002698 ORTHO05D002903 4.6e-07 58.9 166 26.5
THA.LOC104813516 Tarenaya hassleriana HOM05D002698 ORTHO05D002903 4.6e-07 58.9 127 31.5
HPP92_015733 Vanilla planifolia HOM05D002698 ORTHO05D002903 4.6e-07 58.9 117 34.2
MSTRG.7172 Avicennia marina HOM05D002698 ORTHO05D002903 6.0e-07 58.5 133 30.1
BcaNung02502 Brassica carinata HOM05D002698 ORTHO05D002903 6.0e-07 58.5 206 29.6
CiPaw.10G077000 Carya illinoinensis HOM05D002698 ORTHO05D002903 6.0e-07 58.5 139 29.5
SGA_v2.0_scaffold49G18246 Striga asiatica HOM05D002698 ORTHO05D002903 6.0e-07 58.5 116 32.8
Gohir.D06G215500 Gossypium hirsutum HOM05D002698 ORTHO05D002903 1.0e-06 57.8 128 30.5
Psat1g177000 Pisum sativum HOM05D002698 ORTHO05D002903 1.0e-06 57.8 125 41.6
RcHm_v2.0_Chr5g0001661 Rosa chinensis HOM05D002698 ORTHO05D002903 1.0e-06 57.8 127 31.5
MSTRG.16018 Avicennia marina HOM05D002698 ORTHO05D002903 1.3e-06 57.4 139 29.5
Ca_00713_v3 Cicer arietinum L. HOM05D002698 ORTHO05D002903 1.3e-06 57.4 126 40.5
CsaV3_1G018430 Cucumis sativus L. HOM05D002698 ORTHO05D002903 1.3e-06 57.4 134 40.3
MD10G1329900 Malus domestica HOM05D002698 ORTHO05D002903 1.3e-06 57.4 143 29.4
Medtr2g025490 Medicago truncatula HOM05D002698 ORTHO05D002903 1.3e-06 57.4 126 41.3
MELO3C021699.2 Cucumis melo HOM05D002698 ORTHO05D002903 1.7e-06 57.0 134 35.8
Gohir.A10G009700 Gossypium hirsutum HOM05D002698 ORTHO05D002903 1.7e-06 57.0 122 41.8
Gorai.011G010300 Gossypium raimondii HOM05D002698 ORTHO05D002903 1.7e-06 57.0 122 41.8
Aa31LG6G4420 Aethionema arabicum HOM05D002698 ORTHO05D002903 2.3e-06 56.6 121 33.1
Thhalv10026905m.g Eutrema salsugineum HOM05D002698 ORTHO05D002903 2.3e-06 56.6 118 36.4
Oeu044417.1 Olea europaea HOM05D002698 ORTHO05D002903 2.3e-06 56.6 111 29.7
SGA_v2.0_scaffold7G03756 Striga asiatica HOM05D002698 ORTHO05D002903 2.3e-06 56.6 127 31.5
unitig_27.g24806 Utricularia gibba HOM05D002698 ORTHO05D002903 2.3e-06 56.6 117 33.3
Actinidia05062 Actinidia chinensis HOM05D002698 ORTHO05D010865 3.0e-06 56.2 92 47.8
Gohir.D10G009400 Gossypium hirsutum HOM05D002698 ORTHO05D002903 3.0e-06 56.2 122 41.8
Oeu049727.2 Olea europaea HOM05D002698 ORTHO05D002903 3.0e-06 56.2 110 31.8
Ciclev10016689m.g Citrus clementina HOM05D002698 ORTHO05D002903 3.9e-06 55.8 127 41.7
TPR.G32254 Trifolium pratense HOM05D002698 ORTHO05D002903 3.9e-06 55.8 123 39.8
arahy.Tifrunner.gnm1.ann1.38NIYD Arachis hypogaea HOM05D002698 ORTHO05D002903 5.0e-06 55.5 139 38.8
Cfa000116 Carpinus fangiana HOM05D002698 ORTHO05D002903 6.6e-06 55.1 132 41.7
Nitab4.5_0000143g0370 Nicotiana tabacum HOM05D002698 ORTHO05D002903 6.6e-06 55.1 124 31.5
Nitab4.5_0001198g0160 Nicotiana tabacum HOM05D002698 ORTHO05D002903 6.6e-06 55.1 124 31.5
Nitab4.5_0001735g0050 Nicotiana tabacum HOM05D002698 ORTHO05D002903 6.6e-06 55.1 126 31.0
Phvul.006G143900 Phaseolus vulgaris HOM05D002698 ORTHO05D002903 6.6e-06 55.1 128 34.4
VMungo0540G1252 Vigna mungo HOM05D002698 ORTHO05D002903 6.6e-06 55.1 127 33.9
arahy.Tifrunner.gnm1.ann1.83IVCD Arachis hypogaea HOM05D002698 ORTHO05D002903 8.6e-06 54.7 141 38.3
Lalb_Chr20g0119181 Lupinus albus HOM05D002698 ORTHO05D002903 8.6e-06 54.7 110 41.8
Sed0002138 Sechium edule HOM05D002698 ORTHO05D002903 8.6e-06 54.7 126 37.3


User provided reference genes

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