Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 0.0e+00 2057.0 1023 100.0
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 0.0e+00 1409.0 1002 71.3
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 0.0e+00 1268.4 999 65.6
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1189.9 1020 58.9
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 0.0e+00 1159.1 1013 58.3
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 1077.4 981 55.8
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 7.0e-312 1074.7 1005 54.6
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 7.0e-312 1074.3 1015 54.5
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 2.6e-309 1065.4 1020 54.5
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 2.1e-306 1055.8 981 55.1
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 1.9e-299 1032.7 1011 52.1
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 1.6e-298 1029.6 1015 52.4
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 6.1e-298 1027.7 1019 52.2
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 3.0e-297 1025.4 1001 50.6
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 6.9e-294 1014.2 1024 50.6
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 1.5e-293 1013.1 1027 51.3
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 2.0e-293 1012.7 1052 51.0
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 2.4e-286 989.2 1016 49.9
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 8.5e-284 980.7 1001 51.4
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 9.4e-283 977.2 1019 50.2
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 5.7e-280 968.0 979 51.0
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.3e-279 966.8 983 52.3
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 4.7e-274 948.3 1006 48.4
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 1.0e-273 947.2 1016 47.8
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 6.3e-271 937.9 1016 47.7
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.3e-268 930.2 1016 47.8
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 8.5e-268 927.5 1014 49.1
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 2.5e-267 926.0 1004 49.3
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 1.2e-266 923.7 1010 48.1
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 3.5e-261 905.6 1018 48.2
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 9.2e-254 880.9 1017 47.7
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 3.5e-253 879.0 1016 46.3
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 2.3e-252 876.3 1017 45.8
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 6.6e-252 874.8 1020 45.1
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 1.1e-251 874.0 1019 46.5
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 1.5e-251 873.6 1026 46.0
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 1.8e-249 866.7 1000 45.3
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 2.3e-249 866.3 1030 45.8
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 2.6e-248 862.8 992 46.1
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 1.3e-247 860.5 1016 45.5
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 2.9e-247 859.4 1017 45.6
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 6.4e-247 858.2 942 48.1
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 2.4e-246 856.3 1133 43.3
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 3.2e-246 855.9 1010 45.7
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 4.1e-246 855.5 1016 44.9
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 7.0e-246 854.7 1024 46.0
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 1.2e-245 854.0 1024 45.4
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 1.0e-244 850.9 1010 44.8
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 1.7e-244 850.1 1007 45.1
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.5e-243 847.0 1007 45.1
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 7.3e-243 844.7 1016 44.2
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 1.6e-242 843.6 954 46.6
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 6.2e-242 841.6 1010 44.8
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 1.1e-241 840.9 1008 43.7
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 2.0e-240 836.6 1009 43.2
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 3.4e-240 835.9 1006 43.3
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 3.4e-240 835.9 1006 43.0
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 1.3e-239 833.9 1002 42.2
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 2.9e-239 832.8 1005 42.8
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 6.4e-239 831.6 1009 43.1
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 8.3e-239 831.2 1027 42.2
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 1.1e-238 830.9 1019 42.9
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.7e-236 823.5 935 46.4
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 3.9e-236 822.4 1017 45.6
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 1.6e-234 817.0 1016 44.5
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 2.2e-223 780.0 841 45.9
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 4.6e-221 772.3 930 44.4
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 6.0e-221 771.9 749 51.5
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.8e-212 743.8 928 44.5
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 1.5e-208 730.7 896 42.7
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 1.2e-205 721.1 1009 39.1
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 5.8e-200 702.2 1017 38.2
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 7.1e-198 695.3 1083 40.4
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.5e-195 687.6 746 45.0
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.1e-193 681.4 1008 39.6
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.1e-193 681.4 832 45.1
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 4.6e-189 666.0 755 45.7
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 7.9e-189 665.2 822 44.5
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 1.8e-188 664.1 1007 37.6
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 5.3e-185 652.5 860 42.0
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 2.9e-175 620.2 574 54.0
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 3.6e-173 613.2 845 40.5
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 2.2e-170 604.0 722 42.8
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 2.4e-169 600.5 1015 36.2
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 8.0e-165 585.5 712 41.6
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 2.8e-162 577.0 1010 36.2
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 2.9e-159 567.0 798 41.5
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.1e-142 511.9 588 46.3
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 1.6e-125 454.9 1006 33.0
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 2.7e-120 437.6 748 36.4
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.1e-119 433.3 429 50.1
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 9.5e-118 429.1 439 51.5
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 1.4e-116 425.2 878 33.9
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 8.1e-93 346.3 998 27.6
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 3.8e-82 310.8 489 41.1
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 1.4e-81 308.9 1044 26.2
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.5e-78 298.1 365 43.6
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 3.6e-64 251.1 441 36.1
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 7.9e-64 250.0 195 56.4
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 1.5e-62 245.7 249 53.8
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.1e-60 239.6 508 33.7
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 9.1e-60 236.5 311 36.7
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 2.9e-58 231.5 196 55.1
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 8.5e-58 229.9 235 49.4
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 2.6e-54 218.4 222 51.8
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 2.6e-51 208.4 430 34.4
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 2.3e-47 195.3 141 65.2
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 4.0e-47 194.5 237 43.0
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.4e-44 186.0 176 52.8
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.5e-38 166.0 158 48.1
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 2.6e-38 165.2 137 52.6
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 3.3e-33 148.3 194 44.3
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.5e-33 147.5 146 48.6
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 7.3e-25 120.6 114 51.8
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 2.2e-21 109.0 78 60.3
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 4.9e-21 107.8 250 29.6
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 1.1e-20 106.7 157 35.7
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 5.4e-20 104.4 97 54.6
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 9.2e-20 103.6 149 43.0
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 3.5e-19 101.7 149 42.3
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 1.6e-16 92.8 99 43.4
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 6.0e-11 74.3 157 28.0
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.6e-08 65.1 74 44.6
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 4.7e-08 64.7 155 31.6
SalBow8G1611 Salvia bowleyana HOM05D000090 ORTHO05D000083 2.0e-06 59.3 34 85.3
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 2.6e-06 58.9 126 34.1
CBR_g36330 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-06 58.5 131 27.5


User provided reference genes

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