Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.0e-189 666.8 383 100.0
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.5e-119 433.0 373 71.0
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 5.2e-117 425.2 377 70.3
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.7e-107 393.7 421 60.8
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.5e-100 370.5 375 62.1
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 5.9e-97 358.6 397 59.2
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.4e-90 336.7 393 55.5
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.5e-87 327.4 399 53.4
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 2.5e-87 326.6 397 54.2
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.1e-86 323.6 390 53.8
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 4.0e-85 319.3 384 53.1
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 3.7e-83 312.8 411 56.9
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.0e-81 307.0 397 52.1
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 3.5e-81 306.2 268 72.4
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 6.0e-81 305.4 397 51.4
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.0e-81 305.4 399 52.9
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 1.3e-80 304.3 356 57.0
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 6.6e-80 302.0 397 52.6
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 2.8e-78 296.6 413 54.2
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.1e-77 294.7 348 54.6
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.1e-77 294.7 397 56.4
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 8.9e-77 291.6 397 55.7
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 1.5e-76 290.8 342 54.4
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.7e-75 287.3 393 51.9
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 5.4e-74 282.3 404 49.5
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.0e-73 278.9 427 46.4
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 3.0e-72 276.6 401 48.6
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.9e-72 276.2 412 47.8
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 3.9e-72 276.2 407 48.6
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 6.6e-72 275.4 406 52.7
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 8.6e-72 275.0 404 51.5
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 3.3e-71 273.1 380 48.7
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 9.5e-71 271.6 383 48.3
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.8e-70 270.0 401 50.1
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.8e-69 267.3 387 49.1
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 4.0e-69 266.2 381 48.6
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 2.0e-68 263.8 396 47.5
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 5.8e-68 262.3 372 51.1
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.3e-67 261.2 416 47.8
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.3e-67 261.2 398 46.5
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.9e-67 260.0 397 46.9
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 8.4e-67 258.5 396 46.5
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 8.4e-67 258.5 397 46.1
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 1.1e-66 258.1 411 45.7
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.9e-66 257.3 395 46.8
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 3.2e-66 256.5 401 49.6
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 9.2e-66 255.0 397 46.1
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 2.1e-65 253.8 378 46.8
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 2.7e-65 253.4 425 44.5
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 3.5e-65 253.1 385 49.1
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 6.0e-65 252.3 399 49.9
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.0e-64 251.5 410 45.6
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.0e-64 251.5 389 47.3
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.7e-64 250.8 330 51.8
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.5e-63 246.9 390 48.5
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.3e-63 246.5 330 51.2
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 4.3e-63 246.1 359 47.4
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 5.6e-63 245.7 407 45.2
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 1.2e-62 244.6 321 51.7
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 2.1e-62 243.8 406 45.8
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.8e-62 243.4 331 51.4
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 3.6e-62 243.0 382 46.6
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 4.7e-62 242.7 382 48.4
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 4.7e-62 242.7 392 50.0
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 4.7e-62 242.7 357 49.0
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.2e-62 242.3 343 49.0
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.1e-61 241.5 365 49.3
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.4e-61 241.1 396 43.9
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.1e-61 240.0 330 49.7
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.2e-60 238.0 397 48.4
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.6e-60 236.9 393 47.1
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 9.9e-60 235.0 411 44.8
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.3e-59 234.6 329 47.7
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 2.2e-59 233.8 389 44.7
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.2e-59 233.8 397 49.6
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.9e-59 232.6 327 50.2
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 1.1e-58 231.5 373 45.3
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 7.1e-58 228.8 419 43.0
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 9.3e-58 228.4 386 46.6
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 4.6e-57 226.1 410 43.9
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 7.8e-57 225.3 377 46.7
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 2.3e-56 223.8 378 44.4
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 3.0e-56 223.4 397 44.8
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 3.9e-56 223.0 378 44.7
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 3.3e-55 219.9 393 45.0
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 5.6e-55 219.2 325 52.6
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 9.6e-55 218.4 353 47.9
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.3e-54 218.0 392 48.7
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.6e-54 217.6 397 45.1
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.2e-52 211.5 391 47.3
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.6e-52 210.3 311 45.7
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 2.6e-52 210.3 370 47.8
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 7.6e-52 208.8 400 43.2
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 9.9e-52 208.4 375 46.7
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.3e-51 208.0 287 55.7
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 3.2e-50 203.4 294 46.9
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 2.3e-48 197.2 338 44.1
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 1.4e-45 188.0 220 55.9
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 3.1e-45 186.8 370 38.6
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 9.0e-45 185.3 183 59.0
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.5e-44 184.5 390 38.7
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 1.1e-42 178.3 376 40.7
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.9e-42 177.6 392 38.5
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 2.4e-42 177.2 265 45.3
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 4.2e-42 176.4 361 41.0
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 9.3e-42 175.3 376 39.9
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.6e-41 174.5 360 41.4
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.1e-41 174.1 377 37.7
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 2.1e-41 174.1 381 38.3
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 2.7e-41 173.7 365 40.5
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 4.6e-41 172.9 391 45.8
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 7.9e-41 172.2 352 41.5
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 7.9e-41 172.2 352 40.3
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 1.3e-40 171.4 363 39.9
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 1.3e-40 171.4 363 39.9
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 2.3e-40 170.6 256 48.0
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 3.0e-40 170.2 347 42.4
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 8.7e-40 168.7 193 58.0
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 4.3e-39 166.4 378 39.4
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 3.7e-38 163.3 326 42.3
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.7e-38 163.3 279 46.2
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.7e-38 163.3 279 46.2
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 4.8e-38 162.9 363 40.2
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 9.0e-37 158.7 118 77.1
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 2.1e-33 147.5 327 38.2
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 3.7e-30 136.7 180 53.3
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.1e-29 135.2 310 38.1
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 2.5e-26 124.0 338 32.0
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 9.3e-26 122.1 357 33.9
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.1e-24 116.3 203 46.8
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.1e-24 116.3 203 46.8
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-23 115.2 122 55.7
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.3e-22 111.7 82 72.0
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.7e-22 110.2 204 46.1
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 4.1e-21 106.7 215 41.4
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 3.2e-18 97.1 332 31.0
unitig_37.g12182 Utricularia gibba HOM05D004683 ORTHO05D005388 2.0e-12 77.8 115 47.8
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 4.5e-12 76.6 247 34.8
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.9e-10 71.2 204 36.3
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.5e-10 70.9 204 36.3
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.5e-10 70.9 204 36.3
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 3.2e-10 70.5 219 31.1
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 5.5e-10 69.7 105 46.7
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.2e-10 69.3 204 35.8
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.2e-10 69.3 204 35.8
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.2e-10 69.3 204 35.3
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 2.6e-07 60.8 52 61.5
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 3.7e-06 57.0 87 42.5
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.8e-06 56.6 164 33.5


User provided reference genes

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