Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 8.2e-42 173.3 89 100.0
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.4e-09 66.2 58 58.6
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.4e-09 66.2 58 58.6
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 1.4e-09 66.2 58 58.6
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 1.4e-09 66.2 58 58.6
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 1.4e-09 66.2 58 58.6
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 2.4e-09 65.5 58 58.6
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 3.1e-09 65.1 58 58.6
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 3.1e-09 65.1 58 58.6
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 4.1e-09 64.7 58 56.9
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 4.1e-09 64.7 58 56.9
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 5.4e-09 64.3 62 53.2
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 5.4e-09 64.3 58 56.9
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 7.0e-09 63.9 55 58.2
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 7.0e-09 63.9 58 58.6
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 7.0e-09 63.9 58 56.9
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 1.2e-08 63.2 90 42.2
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 1.6e-08 62.8 58 55.2
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 3.5e-08 61.6 55 56.4
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 4.5e-08 61.2 58 55.2
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 5.9e-08 60.8 55 54.5
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 5.9e-08 60.8 58 55.2
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 5.9e-08 60.8 58 55.2
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 5.9e-08 60.8 58 53.4
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 5.9e-08 60.8 55 56.4
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 7.8e-08 60.5 58 51.7
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.0e-07 60.1 62 51.6
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.3e-07 59.7 55 54.5
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 1.3e-07 59.7 58 51.7
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 1.7e-07 59.3 83 41.0
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 1.7e-07 59.3 83 41.0
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 1.7e-07 59.3 58 51.7
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 1.7e-07 59.3 58 50.0
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.7e-07 59.3 58 50.0
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 2.3e-07 58.9 58 51.7
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 2.3e-07 58.9 58 48.3
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.3e-07 58.9 58 48.3
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 2.3e-07 58.9 54 51.9
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 2.9e-07 58.5 58 51.7
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 2.9e-07 58.5 58 51.7
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 2.9e-07 58.5 58 51.7
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 2.9e-07 58.5 60 50.0
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 3.9e-07 58.2 54 51.9
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 3.9e-07 58.2 54 51.9
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 3.9e-07 58.2 54 51.9
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 3.9e-07 58.2 58 48.3
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 5.0e-07 57.8 58 50.0
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 5.0e-07 57.8 58 48.3
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 5.0e-07 57.8 58 51.7
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 6.6e-07 57.4 58 50.0
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 6.6e-07 57.4 58 50.0
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 6.6e-07 57.4 58 46.6
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 6.6e-07 57.4 54 51.9
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 6.6e-07 57.4 58 50.0
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 6.6e-07 57.4 58 50.0
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 6.6e-07 57.4 58 50.0
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 6.6e-07 57.4 58 50.0
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 6.6e-07 57.4 81 35.8
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 8.6e-07 57.0 58 51.7
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 8.6e-07 57.0 58 48.3
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 8.6e-07 57.0 81 35.8
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.1e-06 56.6 58 50.0
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.1e-06 56.6 58 50.0
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 1.5e-06 56.2 54 50.0
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 1.9e-06 55.8 58 46.6
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 1.9e-06 55.8 58 46.6
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 2.5e-06 55.5 58 46.6
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 2.5e-06 55.5 58 48.3
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 2.5e-06 55.5 58 48.3
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 2.5e-06 55.5 52 53.8
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 3.3e-06 55.1 58 46.6
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 3.3e-06 55.1 58 46.6
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 3.3e-06 55.1 58 46.6
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 3.3e-06 55.1 58 46.6
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 3.3e-06 55.1 58 48.3
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 3.3e-06 55.1 55 50.9
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 4.3e-06 54.7 58 43.1
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 4.3e-06 54.7 58 44.8
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 4.3e-06 54.7 58 44.8
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 4.3e-06 54.7 58 44.8
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 4.3e-06 54.7 58 44.8
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 5.6e-06 54.3 58 44.8
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 9.5e-06 53.5 58 46.6
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 9.5e-06 53.5 58 46.6
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 9.5e-06 53.5 54 48.1
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 9.5e-06 53.5 58 46.6
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 9.5e-06 53.5 58 44.8
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 9.5e-06 53.5 56 46.4


User provided reference genes

Program Settings