Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 2.1e-175 619.0 328 100.0
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 6.0e-98 361.7 345 62.0
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 3.6e-87 325.9 353 57.5
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.4e-83 313.9 373 53.9
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.4e-83 313.2 376 54.3
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 3.3e-80 302.8 326 57.4
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 3.3e-80 302.8 356 55.1
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 3.8e-76 289.3 351 53.3
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 8.4e-76 288.1 354 53.4
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 2.1e-74 283.5 356 52.5
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 3.5e-74 282.7 312 57.4
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.9e-73 279.3 332 55.4
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.3e-71 274.2 316 56.0
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 3.1e-70 269.6 365 49.9
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 5.3e-70 268.9 343 50.7
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 3.6e-66 256.1 323 52.9
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.9e-66 255.0 355 49.9
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 3.0e-65 253.1 351 51.0
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.9e-65 252.7 337 51.0
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 6.7e-65 251.9 325 50.8
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 8.7e-65 251.5 372 48.1
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.5e-64 250.0 325 50.8
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 7.4e-64 248.4 341 51.9
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.3e-63 247.7 358 48.9
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 3.7e-63 246.1 340 51.5
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 8.2e-63 245.0 341 51.3
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 1.4e-62 244.2 327 52.0
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 5.3e-62 242.3 338 51.2
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.2e-61 241.1 307 50.5
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 2.6e-61 240.0 336 48.2
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 5.9e-61 238.8 344 48.8
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 7.7e-61 238.4 341 50.1
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.3e-60 237.7 336 47.9
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 2.2e-60 236.9 358 48.3
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 2.2e-60 236.9 334 49.4
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 8.5e-60 235.0 377 47.7
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 1.1e-59 234.6 329 46.5
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 5.5e-59 232.3 343 46.9
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 3.6e-58 229.6 335 48.4
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 7.9e-58 228.4 382 45.3
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.0e-57 228.0 337 48.7
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.8e-57 227.3 341 49.3
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 2.3e-57 226.9 326 50.3
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 2.6e-56 223.4 351 45.3
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.3e-56 223.0 342 48.8
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 5.7e-56 222.2 352 45.2
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 7.4e-56 221.9 331 47.7
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 1.7e-55 220.7 323 46.7
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 2.2e-55 220.3 329 47.7
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 8.2e-55 218.4 347 45.0
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 1.8e-54 217.2 321 45.8
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.8e-54 217.2 336 45.2
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.4e-54 216.9 346 45.7
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 4.1e-54 216.1 334 47.3
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 2.0e-53 213.8 360 45.8
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 5.9e-53 212.2 339 49.3
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 5.9e-53 212.2 311 48.6
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 7.7e-53 211.8 328 49.4
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 7.7e-53 211.8 328 46.6
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.3e-52 211.1 319 47.0
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 2.9e-52 209.9 368 42.9
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 5.0e-52 209.1 340 49.4
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 5.0e-52 209.1 341 47.5
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 8.5e-52 208.4 330 46.4
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 8.5e-52 208.4 314 46.5
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 1.1e-51 208.0 361 44.6
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 1.9e-51 207.2 342 45.9
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 1.9e-51 207.2 337 46.0
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 4.2e-51 206.1 294 49.0
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 1.2e-50 204.5 405 41.2
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.2e-50 204.5 351 44.2
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 2.1e-50 203.8 340 46.5
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.1e-50 203.8 327 47.7
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 3.6e-50 203.0 317 45.7
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 4.7e-50 202.6 310 46.5
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 4.7e-50 202.6 336 46.1
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.0e-49 201.4 355 46.5
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.4e-49 201.1 330 44.5
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 1.4e-49 201.1 300 49.7
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.4e-49 201.1 335 46.9
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.4e-49 201.1 241 56.4
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.8e-49 200.7 329 45.6
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.1e-48 198.0 332 46.4
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 2.0e-48 197.2 332 46.4
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 2.0e-48 197.2 345 44.6
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 3.3e-48 196.4 320 44.7
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 4.4e-48 196.1 332 46.4
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 4.4e-48 196.1 332 46.4
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 4.4e-48 196.1 332 46.4
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 7.4e-48 195.3 314 44.9
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 2.8e-47 193.4 339 44.5
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 3.7e-47 193.0 340 44.4
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 6.3e-47 192.2 331 46.2
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 6.3e-47 192.2 316 43.7
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 8.2e-47 191.8 333 45.9
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 1.1e-46 191.4 351 43.6
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-46 191.0 347 43.8
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 2.4e-46 190.3 336 43.8
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 3.1e-46 189.9 419 38.4
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.1e-46 189.5 337 46.6
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 5.3e-46 189.1 350 42.9
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 1.2e-45 188.0 329 45.3
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.6e-45 187.6 331 45.0
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.6e-45 187.6 302 43.4
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 2.0e-45 187.2 359 40.9
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 2.6e-45 186.8 337 42.4
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.6e-45 186.8 317 44.5
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 5.9e-45 185.7 335 43.0
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.3e-44 184.5 333 42.6
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.9e-44 183.3 351 41.9
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.5e-43 181.0 284 46.8
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 3.2e-43 179.9 357 38.4
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 4.2e-43 179.5 295 45.4
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 1.2e-42 177.9 316 43.4
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.2e-42 177.9 327 44.3
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.6e-42 177.6 340 42.6
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-41 174.5 343 42.3
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 3.0e-41 173.3 285 46.3
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.7e-39 167.5 343 41.4
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.1e-38 164.9 332 42.2
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 4.1e-38 162.9 304 40.5
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 2.7e-37 160.2 280 44.3
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 7.7e-37 158.7 343 39.9
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 2.9e-36 156.8 162 57.4
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 3.8e-36 156.4 272 42.3
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 3.8e-36 156.4 308 40.6
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 5.0e-36 156.0 307 41.0
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.5e-36 155.6 164 56.7
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.5e-35 154.5 314 42.4
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 3.2e-35 153.3 309 40.5
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 4.7e-34 149.4 333 37.8
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.0e-33 148.3 238 44.5
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 5.2e-33 146.0 279 44.1
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 5.2e-33 146.0 346 37.9
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 6.8e-33 145.6 227 47.1
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 1.3e-31 141.4 373 37.8
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.2e-31 140.6 210 47.1
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 2.4e-30 137.1 343 37.6
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-29 134.8 291 37.8
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 2.7e-29 133.7 161 49.7
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 7.7e-29 132.1 226 40.7
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.3e-28 131.3 304 38.5
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 6.8e-25 119.0 323 32.8
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-24 118.2 139 49.6
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.3e-23 114.8 300 36.7
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 6.3e-23 112.5 310 37.1
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 8.3e-23 112.1 155 49.7
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 4.5e-21 106.3 152 48.7
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 5.9e-21 105.9 253 36.0
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 2.9e-20 103.6 342 35.4
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 9.5e-19 98.6 219 36.5
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.8e-17 94.4 187 41.2
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 1.2e-16 91.7 350 32.3
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 3.2e-14 83.6 231 33.3
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 8.6e-12 75.5 330 29.1
Oeu049699.1 Olea europaea HOM05D004496 ORTHO05D005513 3.1e-09 67.0 62 66.1
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.5e-08 62.4 139 35.3
Zm00001eb143140 Zea mays HOM05D004496 ORTHO05D005513 1.9e-06 57.8 47 63.8


User provided reference genes

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